Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F48 I1 R1
|
508 |
125.6 |
4303852 |
99.2% |
4269421 |
139.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,171,273 |
C→A |
L264I (CTC→ATC) |
qseC → |
sensory histidine kinase QseC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,171,273 | 0 | C | A | 99.1%
| 371.6
/ ‑3.1
| 111 | L264I (CTC→ATC) | qseC | sensory histidine kinase QseC |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base A (49/61); total (50/61) |
| Fisher's exact test for biased strand distribution p-value = 4.50e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 |
Only 100 of 114 total aligned reads displayed.
ACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGCTCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAGGACGTC > NC_000913/3171137‑3171407
|
gTTGAGTCGCTAAATCAACTGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGa < 1:31732/140‑1 (MQ=255)
gTTGAGTCGCTAAATCAACTGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGa < 2:301629/140‑1 (MQ=255)
gTTGAGTCGCTAAATCAACTGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGa < 2:1078367/140‑1 (MQ=255)
ttGAGTCGCTAAATCAACTGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGAc < 1:784651/140‑1 (MQ=255)
gAGTCGCTAAATCAACTGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACga < 1:622913/140‑1 (MQ=255)
gAGTCGCTAAATCAACTGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACga < 2:567109/140‑1 (MQ=255)
gAGTCGCTAAATCAACTGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACga < 2:530678/140‑1 (MQ=255)
gCTAAATCAACTGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATc > 1:444254/1‑140 (MQ=255)
tAAATCAACTGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCg > 1:612002/1‑140 (MQ=255)
tAAATCAACTGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCg > 2:179946/1‑140 (MQ=255)
aaCTGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGgcg < 1:1261950/140‑1 (MQ=255)
aaCTGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGgcg < 1:792088/140‑1 (MQ=255)
aCTGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGgcgc > 2:232352/1‑140 (MQ=255)
cTGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGcgcg < 1:1883170/140‑1 (MQ=255)
cTGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGcgcg > 2:2128152/1‑140 (MQ=255)
atGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGcgcg < 2:123688/139‑1 (MQ=255)
tGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCgg > 1:1650103/1‑140 (MQ=255)
tGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCgg > 1:1629644/1‑140 (MQ=255)
cGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGTAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGaaaa > 1:335424/1‑140 (MQ=255)
cGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGaaaa < 2:1114682/140‑1 (MQ=255)
cGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGaaaa < 2:1104722/140‑1 (MQ=255)
cGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGaaaa < 2:612002/140‑1 (MQ=255)
cGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGaaaa > 1:209750/1‑140 (MQ=255)
gCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGaaaaa > 1:1061264/1‑140 (MQ=255)
gCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGaaaaa > 1:921979/1‑140 (MQ=255)
gCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGC‑CGGaaaaaa > 2:1227080/1‑140 (MQ=255)
ccGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAg < 1:2128152/140‑1 (MQ=255)
gCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGTAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCa < 2:335424/140‑1 (MQ=255)
gCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCa < 1:179946/140‑1 (MQ=255)
cacacaTGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCAc < 2:1506540/140‑1 (MQ=255)
acacaTGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACt < 2:2057928/140‑1 (MQ=255)
acacaTGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACt < 1:530070/140‑1 (MQ=255)
aTGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTc < 1:2063741/140‑1 (MQ=255)
gCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCa > 2:526615/1‑140 (MQ=255)
gCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCa > 2:1830056/1‑140 (MQ=255)
tgatgGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTa < 1:345838/140‑1 (MQ=255)
tgatgGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTa < 1:1012652/140‑1 (MQ=255)
atgGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACa > 2:258249/1‑140 (MQ=255)
atgGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACa > 1:824454/1‑140 (MQ=255)
atgGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACa > 1:601833/1‑140 (MQ=255)
ggTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACAtt < 2:947026/140‑1 (MQ=255)
ggTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACAtt < 1:309109/140‑1 (MQ=255)
gTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGCTCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTc > 2:265522/1‑140 (MQ=255)
gTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTc < 2:824454/140‑1 (MQ=255)
ttCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCAc > 2:1849616/1‑123 (MQ=255)
ttCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCAc < 1:1849616/123‑1 (MQ=255)
ttCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTcc > 1:159717/1‑140 (MQ=255)
ttCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTcc > 2:175559/1‑140 (MQ=255)
tGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGga > 1:152987/1‑140 (MQ=255)
aaCGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGgatc < 1:1444414/140‑1 (MQ=255)
gCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATcgc < 1:258249/140‑1 (MQ=255)
ttACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCt < 2:601833/140‑1 (MQ=255)
tACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTa < 2:209750/140‑1 (MQ=255)
tACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTa < 2:1803088/140‑1 (MQ=255)
tccTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTAc < 1:1651768/139‑1 (MQ=255)
ccGACGCAGCTCACGTACTTCGTAGCCCGTTAACGGCGTTGAAAGCGCAAACCGAAGTTGCGCAGATCCCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGt > 1:1163300/1‑140 (MQ=255)
ccGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGt > 1:604922/1‑140 (MQ=255)
cGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTc > 1:1698851/1‑140 (MQ=255)
gACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAACAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCt < 1:1058483/140‑1 (MQ=255)
gACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCt < 1:1830056/140‑1 (MQ=255)
gACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCt < 1:871386/140‑1 (MQ=255)
aCGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGTAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCtt > 2:905018/1‑139 (MQ=255)
aGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTg > 1:1290897/1‑140 (MQ=255)
cTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGAt > 1:1705501/1‑140 (MQ=255)
cTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGAt < 1:232352/140‑1 (MQ=255)
aCGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCaa < 2:1650103/140‑1 (MQ=255)
aCGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCaa < 2:1469577/140‑1 (MQ=255)
aCGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCaa < 2:1163300/140‑1 (MQ=255)
aCGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCaa < 1:2019774/140‑1 (MQ=255)
cTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCt > 2:2085781/1‑140 (MQ=255)
tCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCa > 1:2056834/1‑140 (MQ=255)
tCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCa > 2:2032238/1‑140 (MQ=255)
tCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCa > 1:1696175/1‑140 (MQ=255)
tAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGc > 2:829824/1‑140 (MQ=255)
cccGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTAt < 2:1705501/140‑1 (MQ=255)
cccGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTAt < 2:921979/140‑1 (MQ=255)
cGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATcg > 1:574894/1‑140 (MQ=255)
gTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATcgc > 1:109335/1‑140 (MQ=255)
gTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATcgc > 1:1716662/1‑140 (MQ=255)
gTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATcgc > 1:1340462/1‑140 (MQ=255)
gTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGC‑CGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATcgcg < 1:1227080/140‑1 (MQ=255)
tAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCgg < 2:574894/140‑1 (MQ=255)
tAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCgg > 2:1383246/1‑140 (MQ=255)
gcgcTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTGCATTCCGGGATCGATCGCGCTACTCGTCTGGTTGAACAACTGCTCACGCTATCGCGGCTGGa < 2:864052/140‑1 (MQ=255)
gcgcTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGa < 1:992983/140‑1 (MQ=255)
cgcTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGAc > 2:1826313/1‑140 (MQ=255)
cgcTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGAc > 1:2106058/1‑140 (MQ=255)
gcTGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACt < 2:109335/140‑1 (MQ=255)
tGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCACTTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCa < 2:1855074/140‑1 (MQ=255)
tGAAAGTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCa < 2:42818/140‑1 (MQ=255)
gTGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGa < 2:1696175/140‑1 (MQ=255)
tGCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGAt < 2:686845/140‑1 (MQ=255)
gCAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATa < 2:584337/140‑1 (MQ=255)
cAAACCGAAGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATaa < 2:1716662/140‑1 (MQ=255)
aaGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATa < 2:130261/132‑1 (MQ=255)
aGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAgg < 2:1092886/140‑1 (MQ=255)
aGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAgg > 2:1998734/1‑140 (MQ=255)
aGTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAgg < 1:829824/140‑1 (MQ=255)
gTTGCGCAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGAAAACCTTCAGGa < 2:1674212/140‑1 (MQ=255)
cgcAGATCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAGGACGTc > 1:205522/1‑140 (MQ=255)
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ACTGGTTGAGTCGCTAAATCAACTGTTCGCCCGCACACATGCGATGATGGTTCGTGAACGACGCTTTACCTCCGACGCAGCTCACGAACTTCGTAGCCCGTTAACGGCGCTGAAAGTGCAAACCGAAGTTGCGCAGCTCTCTGACGATGATCCGCAGGCGCGGAAAAAAGCACTGCTCCAATTACATTCCGGGATCGATCGCGCTACTCGTCTGGTTGATCAACTGCTCACGCTATCGCGGCTGGACTCACTGGATAACCTTCAGGACGTC > NC_000913/3171137‑3171407
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
