Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,181,261 C→A P281T (CCG→ACG)  ygiC → putative enzyme with ATPase activity

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,181,2610CA100.0% 461.4 / NA 134P281T (CCG→ACG) ygiCputative enzyme with ATPase activity
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (80/54);  total (80/54)

Only 100 of 134 total aligned reads displayed.

CGTGGGAATTTATGTTGCGTGAGATGTTCTCAACCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACCCGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAA  >  NC_000913/3181124‑3181395
                                                                                                                                         |                                                                                                                                      
  tGGGAATTTATGTTGCGTGAGATGTTCTCAACCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGaa                                                                                                                                    >  1:933412/1‑140 (MQ=255)
    ggAATTTATGTTGCGTGAGATGTTCTCAACCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAAcc                                                                                                                                  >  1:289339/1‑140 (MQ=255)
    ggAATTTATGTTGCGTGAGATGTTCTCAACCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAAcc                                                                                                                                  >  1:1438247/1‑140 (MQ=255)
      aaTTTATGTTGCGTGAGATGTTCTCAACCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACctg                                                                                                                                >  1:559238/1‑140 (MQ=255)
         ttATGTTGCGTGAGATGTTCTCAACCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACctgctg                                                                                                                             <  2:237811/140‑1 (MQ=255)
              ttGCGTGAGATGTTCTCAACCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGc                                                                                                                        <  2:2076113/140‑1 (MQ=255)
                gCGTGAGATGTTCTCAACCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCtt                                                                                                                      >  1:80912/1‑140 (MQ=255)
                 cGTGAGATGTTCTCAACCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCttt                                                                                                                     >  2:1153463/1‑139 (MQ=255)
                 cGTGAGATGTTCTCAACCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTa                                                                                                                     >  1:478225/1‑140 (MQ=255)
                   tGAGATGTTCTCAACCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGAAGTTCCCGAATCACACGAACCTGCTGCCCGCTTAtt                                                                                                                   >  2:1063786/1‑140 (MQ=255)
                      gaTGTTCTCAACCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTg                                                                                                                <  1:737959/140‑1 (MQ=255)
                        tGTTCTCAACCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCg                                                                                                              <  1:127898/140‑1 (MQ=255)
                        tGTTCTCAACCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCg                                                                                                              <  2:2081420/140‑1 (MQ=255)
                        tGTTCTCAACCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCg                                                                                                              <  1:650685/140‑1 (MQ=255)
                            ctcAACCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCTAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGaat                                                                                                          >  2:1773605/1‑139 (MQ=255)
                               aaCCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACTAACCTGCTGCCCGCTTATTTTGCGGAAgatg                                                                                                       >  2:1536689/1‑140 (MQ=255)
                               aaCCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAgatt                                                                                                       >  2:224615/1‑139 (MQ=255)
                               aaCCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAgatg                                                                                                       >  2:1425507/1‑140 (MQ=255)
                                aCCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAgatga                                                                                                      >  1:1687133/1‑140 (MQ=255)
                                    aGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCACTTATTTTGCGGAAGATGatcat                                                                                                  >  2:1875520/1‑140 (MQ=255)
                                      cTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATcc                                                                                                >  2:1973871/1‑140 (MQ=255)
                                         gaggaTGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCa                                                                                             >  1:648772/1‑140 (MQ=255)
                                          aggaTGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCaa                                                                                            <  2:80912/140‑1 (MQ=255)
                                           ggaTGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAgatgat                                                                                                     <  1:534799/130‑1 (MQ=255)
                                               gCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGa                                                                                       >  2:608849/1‑140 (MQ=255)
                                                cAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCACTTATTTTGCGGAAGATGATCATCCGCAAATGGaa                                                                                      <  1:1875520/140‑1 (MQ=255)
                                                     gTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAata                                                                                 <  2:1517317/140‑1 (MQ=255)
                                                      tACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAatat                                                                                <  1:986036/140‑1 (MQ=255)
                                                       aCGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAatatt                                                                               >  2:54755/1‑139 (MQ=255)
                                                        cGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATAtgt                                                                              >  1:90573/1‑140 (MQ=255)
                                                        cGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATAtgt                                                                              >  2:1080504/1‑140 (MQ=255)
                                                          ctggctggAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTgg                                                                            <  1:1092639/140‑1 (MQ=255)
                                                           tggctggAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGt                                                                           <  1:657195/140‑1 (MQ=255)
                                                             gctggAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCTCAAATGGAAAAATATGTGGTTa                                                                         >  1:794376/1‑140 (MQ=255)
                                                             gctggAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTa                                                                         >  2:109245/1‑140 (MQ=255)
                                                             gctggAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTa                                                                         >  1:1897734/1‑140 (MQ=255)
                                                               tggAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAA‑CTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAAc                                                                      <  2:1975427/140‑1 (MQ=255)
                                                                ggAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAAc                                                                      <  2:860843/140‑1 (MQ=255)
                                                                ggAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAAc                                                                      <  2:756819/140‑1 (MQ=255)
                                                                ggAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAAc                                                                      <  2:581983/140‑1 (MQ=255)
                                                                ggAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAAc                                                                      <  1:323746/140‑1 (MQ=255)
                                                                  aaCCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCg                                                                    >  1:369520/1‑140 (MQ=255)
                                                                  aaCCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCg                                                                    >  1:2123210/1‑140 (MQ=255)
                                                                  aaCCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCg                                                                    <  1:1733329/140‑1 (MQ=255)
                                                                     cGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGAtc                                                                 >  2:297259/1‑140 (MQ=255)
                                                                     cGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGAtc                                                                 <  2:1627761/140‑1 (MQ=255)
                                                                       gCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATAtg                                                                               >  2:2006833/1‑124 (MQ=255)
                                                                       gCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATAtg                                                                               <  1:2006833/124‑1 (MQ=255)
                                                                       gCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGAtctt                                                               >  2:529720/1‑140 (MQ=255)
                                                                       gCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGAtctt                                                               <  1:1066045/140‑1 (MQ=255)
                                                                                agCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGa                                                      <  2:559238/140‑1 (MQ=255)
                                                                                 gCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGaa                                                     >  1:735643/1‑140 (MQ=255)
                                                                                  cATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGa                                                      >  1:1699700/1‑138 (MQ=255)
                                                                                  cATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGa                                                      <  2:1699700/138‑1 (MQ=255)
                                                                                  cATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAg                                                    >  1:829371/1‑140 (MQ=255)
                                                                                       tctcCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCa                                               <  2:1438247/140‑1 (MQ=255)
                                                                                       tctcCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCa                                               >  2:1266998/1‑140 (MQ=255)
                                                                                       tctcCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCa                                               >  1:872637/1‑140 (MQ=255)
                                                                                       tctcCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCa                                               >  1:1279137/1‑140 (MQ=255)
                                                                                       tctcCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCa                                               <  1:297259/140‑1 (MQ=255)
                                                                                        ctcCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCaa                                              <  1:539268/140‑1 (MQ=255)
                                                                                        ctcCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCaa                                              <  2:1687133/140‑1 (MQ=255)
                                                                                          ccAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAAc                                            >  1:58238/1‑140 (MQ=255)
                                                                                           caacaaGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACg                                           >  2:1080402/1‑140 (MQ=255)
                                                                                            aacaaGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACgt                                          >  2:1032375/1‑140 (MQ=255)
                                                                                            aacaaGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACgt                                          <  1:1564200/140‑1 (MQ=255)
                                                                                            aacaaGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACgt                                          <  1:158096/140‑1 (MQ=255)
                                                                                            aacaaGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACgt                                          >  1:2014300/1‑140 (MQ=255)
                                                                                            aacaaGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACgt                                          >  1:354401/1‑140 (MQ=255)
                                                                                              caaGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACgtgt                                        <  1:1266998/140‑1 (MQ=255)
                                                                                                 ggCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGa                                     >  2:798239/1‑140 (MQ=255)
                                                                                                 ggCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGa                                     >  2:468596/1‑140 (MQ=255)
                                                                                                   cACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATc                                   >  1:1648325/1‑140 (MQ=255)
                                                                                                     cTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCAt                                 >  2:1463003/1‑140 (MQ=255)
                                                                                                              cTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACgg                        >  1:1388644/1‑140 (MQ=255)
                                                                                                              cTACTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACgg                        >  1:1507019/1‑140 (MQ=255)
                                                                                                                aCTGTGGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCa                      >  1:1560266/1‑140 (MQ=255)
                                                                                                                  tgtgGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCaaa                    <  2:829371/140‑1 (MQ=255)
                                                                                                                   gtgGGAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGTGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCaaaa                   >  2:1907418/1‑140 (MQ=255)
                                                                                                                      ggAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCa                >  1:596624/1‑140 (MQ=255)
                                                                                                                      ggAGATGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCa                >  2:1399278/1‑140 (MQ=255)
                                                                                                                         gaTGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTg             >  2:694624/1‑140 (MQ=255)
                                                                                                                          aTGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGa            <  1:1088860/140‑1 (MQ=255)
                                                                                                                           tGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGaa           <  1:109245/140‑1 (MQ=255)
                                                                                                                           tGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGaa           >  1:1034781/1‑140 (MQ=255)
                                                                                                                           tGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGaa           >  1:194683/1‑140 (MQ=255)
                                                                                                                           tGTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGaa           >  2:1235203/1‑140 (MQ=255)
                                                                                                                            gTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAag          <  1:2010811/140‑1 (MQ=255)
                                                                                                                            gTTCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAag          >  1:729015/1‑140 (MQ=255)
                                                                                                                             ttCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAagc         >  2:362943/1‑140 (MQ=255)
                                                                                                                              tCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAagca        <  1:798239/140‑1 (MQ=255)
                                                                                                                              tCCCGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAagca        >  2:8336/1‑140 (MQ=255)
                                                                                                                               cccGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAagcag       >  2:405828/1‑140 (MQ=255)
                                                                                                                               cccGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAagcag       >  1:1822756/1‑140 (MQ=255)
                                                                                                                               cccGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAagcag       >  1:1033837/1‑140 (MQ=255)
                                                                                                                                 cGAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCg     <  2:2123210/140‑1 (MQ=255)
                                                                                                                                 agAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCg     <  2:369520/139‑1 (MQ=255)
                                                                                                                                  gAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCgg    <  2:289339/140‑1 (MQ=255)
                                                                                                                                  gAATCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCgg    <  1:1973871/140‑1 (MQ=255)
                                                                                                                                    aTCACACGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGaa  <  1:8336/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                      
CGTGGGAATTTATGTTGCGTGAGATGTTCTCAACCAAGCTGGAGGATGCAGGCGTACGCTGGCTGGAACCGGCGTGGAAGAGCATTATCTCCAACAAGGCACTTCTACCGCTACTGTGGGAGATGTTCCCGAATCACCCGAACCTGCTGCCCGCTTATTTTGCGGAAGATGATCATCCGCAAATGGAAAAATATGTGGTTAAACCGATCTTCTCCCGTGAAGGCGCAAACGTGTCGATCATTGAGAACGGCAAAACCATTGAAGCAGCGGAA  >  NC_000913/3181124‑3181395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A