Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,202,092 G→T G68C (GGT→TGT)  cca → fused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase and phosphatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,202,0920GT100.0% 421.8 / NA 121G68C (GGT→TGT) ccafused tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase and phosphatase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (51/70);  total (51/70)

Only 100 of 129 total aligned reads displayed.

GAGATTGGGTGGTGGTCGGCAGTACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCGGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTATCGACCCGTACAA  >  NC_000913/3201955‑3202222
                                                                                                                                         |                                                                                                                                  
gagaTTGGGTGGTGGTCGGCAGTACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAAtcctgt                                                                                                                                  >  2:627124/1‑140 (MQ=255)
gagaTTGGGTGGTGGTCGGCAGTACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAAtcctgt                                                                                                                                  <  1:1341735/140‑1 (MQ=255)
gagaTTGGGTGGTGGTCGGCAGTACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAAtcctgt                                                                                                                                  >  2:513773/1‑140 (MQ=255)
gagaTTGGGTGGTGGTCGGCAGTACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAAtcctgt                                                                                                                                  >  2:1551075/1‑140 (MQ=255)
 agaTTGGGTGGTGGTCGGCAGTACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAAtcctgtt                                                                                                                                 >  1:589386/1‑140 (MQ=255)
 agaTTGGGTGGTGGTCGGCAGTACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAAtcctgtt                                                                                                                                 >  2:1210538/1‑140 (MQ=255)
       ggtggtggtCGGCAGTACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATcctgttccggtt                                                                                                                           >  1:924659/1‑140 (MQ=255)
         tggtggtCGGCAGTACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTac                                                                                                                         <  2:1779008/140‑1 (MQ=255)
         tggtggtCGGCAGTACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTac                                                                                                                         <  1:1286014/140‑1 (MQ=255)
           gtggtCGGCAGTACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTacac                                                                                                                       <  2:682003/140‑1 (MQ=255)
           gtggtCGGCAGTACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTacac                                                                                                                       >  1:1498192/1‑140 (MQ=255)
                 ggCAGTACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGttt                                                                                                                 >  1:1339034/1‑140 (MQ=255)
                   cAGTACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTa                                                                                                               <  2:1861854/140‑1 (MQ=255)
                   cAGTACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTa                                                                                                               <  2:224522/140‑1 (MQ=255)
                      tACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACtt                                                                                                            >  1:1640383/1‑140 (MQ=255)
                      tACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACATACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACtt                                                                                                            >  1:862952/1‑140 (MQ=255)
                       aCGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTg                                                                                                           <  2:1784887/140‑1 (MQ=255)
                        cGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGc                                                                                                          >  1:1231368/1‑140 (MQ=255)
                        cGCCACAGGAGATGCTCGACGCGAGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACATCGGTTTTACTTGc                                                                                                          >  2:2001229/1‑140 (MQ=255)
                            acaGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATg                                                                                                      <  2:769950/140‑1 (MQ=255)
                            acaGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATg                                                                                                      <  2:1411052/140‑1 (MQ=255)
                             caGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGc                                                                                                     <  2:1737671/140‑1 (MQ=255)
                               ggAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCg                                                                                                   <  1:909045/140‑1 (MQ=255)
                               ggAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCg                                                                                                   <  2:1228843/140‑1 (MQ=255)
                                gagaTGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGc                                                                                                  >  2:20958/1‑140 (MQ=255)
                                  gaTGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCAc                                                                                                <  1:1980867/140‑1 (MQ=255)
                                   aTGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCAcc                                                                                               <  2:1510522/140‑1 (MQ=255)
                                     gcccGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCACCCGCAAACGCATGAAGAGCATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCgg                                                                                             >  2:1692243/4‑140 (MQ=255)
                                     gCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCgg                                                                                             >  2:1769509/1‑140 (MQ=255)
                                     gCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCgg                                                                                             >  2:1860392/1‑140 (MQ=255)
                                          aCGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTc                                                                                        >  2:319670/1‑140 (MQ=255)
                                          aCGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTc                                                                                        >  2:1229583/1‑140 (MQ=255)
                                           cgcgGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCa                                                                                       <  1:1831250/140‑1 (MQ=255)
                                                     cagcagGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAga                                                                             <  2:1339034/140‑1 (MQ=255)
                                                     cagcagGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAga                                                                             <  1:1860392/140‑1 (MQ=255)
                                                      agcagGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAgat                                                                            <  2:1931085/140‑1 (MQ=255)
                                                      agcagGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAgat                                                                            <  2:862952/140‑1 (MQ=255)
                                                          ggTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAgatgatt                                                                        >  2:711356/1‑139 (MQ=255)
                                                          ggTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATc                                                                        >  2:1071914/1‑140 (MQ=255)
                                                          ggTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATc                                                                        >  1:1102654/1‑140 (MQ=255)
                                                          ggTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATc                                                                        >  1:917798/1‑140 (MQ=255)
                                                            tAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCtt                                                                      <  2:924659/140‑1 (MQ=255)
                                                              ggCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTaa                                                                    <  2:1498192/140‑1 (MQ=255)
                                                              ggCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTaa                                                                    >  1:232850/1‑140 (MQ=255)
                                                               gCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAg                                                                   >  2:83736/1‑140 (MQ=255)
                                                               gCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAg                                                                   >  2:1557231/1‑140 (MQ=255)
                                                                 cgcgATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGct                                                                 >  2:3718/1‑139 (MQ=255)
                                                                  gcgATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGt                                                                >  1:973646/1‑140 (MQ=255)
                                                                   cgATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTc                                                               <  1:1557231/140‑1 (MQ=255)
                                                                     aTTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTcgc                                                             >  1:2056467/1‑140 (MQ=255)
                                                                        ttCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGAt                                                          <  2:2056467/140‑1 (MQ=255)
                                                                        ttCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGAt                                                          <  2:1442790/140‑1 (MQ=255)
                                                                        ttCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGNCACGCTGGAAGATGATCTTAAGCGTCGCGAt                                                          <  1:627124/140‑1 (MQ=255)
                                                                         tCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATc                                                         <  1:308238/140‑1 (MQ=255)
                                                                          ccTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCt                                                        <  2:1518320/140‑1 (MQ=255)
                                                                           cTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTg                                                       <  2:944089/140‑1 (MQ=255)
                                                                           cTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTg                                                       <  1:1548032/140‑1 (MQ=255)
                                                                                    tGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAAt                                              >  1:1172027/1‑140 (MQ=255)
                                                                                       aTCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACGCCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGGAGATGATCTTAAGCGTCGCGATCTGACCATTAATgcg                                           <  1:1768499/140‑1 (MQ=255)
                                                                                       aTCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATgcg                                           <  1:1769509/140‑1 (MQ=255)
                                                                                       aTCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATgcg                                           <  1:513773/140‑1 (MQ=255)
                                                                                       aTCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATgcg                                           <  2:1102654/140‑1 (MQ=255)
                                                                                       aTCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATgcg                                           <  2:690052/140‑1 (MQ=255)
                                                                                       aTCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATgcg                                           <  1:1935735/140‑1 (MQ=255)
                                                                                       aTCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATgcg                                           <  1:580115/140‑1 (MQ=255)
                                                                                       aTCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATgcg                                           <  2:1712778/140‑1 (MQ=255)
                                                                                        tCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATgcgc                                          <  2:2044883/140‑1 (MQ=255)
                                                                                        tCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATgcgc                                          <  1:1379416/140‑1 (MQ=255)
                                                                                        tCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATgcgc                                          <  1:319670/140‑1 (MQ=255)
                                                                                        tCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATgcgc                                          >  1:2098615/1‑140 (MQ=255)
                                                                                        tCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATgcg                                           >  1:1491961/1‑139 (MQ=255)
                                                                                          cGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTg                                        >  2:2147907/1‑140 (MQ=255)
                                                                                          cGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTg                                        >  1:75213/1‑140 (MQ=255)
                                                                                                cGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAg                                  <  1:1870505/140‑1 (MQ=255)
                                                                                                cGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAg                                  <  1:1292276/140‑1 (MQ=255)
                                                                                                      aaGAGTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGAt                            <  1:697667/140‑1 (MQ=255)
                                                                                                      aaGAGTATGCGCTGGCACGTACCGAACGGAAATCATGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGAt                            <  1:1191515/140‑1 (MQ=255)
                                                                                                        aagTATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATaa                          <  2:1682736/139‑1 (MQ=255)
                                                                                                           tATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACgg                       >  1:1231376/1‑140 (MQ=255)
                                                                                                           tATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACgg                       >  1:841148/1‑140 (MQ=255)
                                                                                                           tATGCGCTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACgg                       >  1:1523542/1‑140 (MQ=255)
                                                                                                              gcgcTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCga                    <  2:1231368/140‑1 (MQ=255)
                                                                                                                 cTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGTGCTGGCCCAGGACGATAACGGCGAGAt                 >  2:1291257/1‑140 (MQ=255)
                                                                                                                 cTGGCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGAt                 >  1:1410237/1‑140 (MQ=255)
                                                                                                                   ggCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTa               >  1:1030929/1‑140 (MQ=255)
                                                                                                                   ggCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTa               <  2:1030929/140‑1 (MQ=255)
                                                                                                                   ggCACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTa               >  1:2143696/1‑140 (MQ=255)
                                                                                                                     cACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTATc             <  1:651877/140‑1 (MQ=255)
                                                                                                                     cACGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTATc             <  1:2001229/140‑1 (MQ=255)
                                                                                                                     aaCGTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTATc             <  2:917798/139‑1 (MQ=255)
                                                                                                                        gTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTATCGAc          <  1:711356/140‑1 (MQ=255)
                                                                                                                        gTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTATCGAc          <  1:1590160/140‑1 (MQ=255)
                                                                                                                        gTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTATCGAc          <  1:2147907/140‑1 (MQ=255)
                                                                                                                        gTACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTATCGAc          <  2:1391560/140‑1 (MQ=255)
                                                                                                                         tACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTATCGAcc         >  2:1576829/1‑140 (MQ=255)
                                                                                                                         tACCGAACGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTATCGAcc         >  2:1362206/1‑140 (MQ=255)
                                                                                                                              aaCGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTATCGACCCGTAc    >  2:2136754/1‑140 (MQ=255)
                                                                                                                              aaCGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTATCGACCCGTAc    >  1:840352/1‑140 (MQ=255)
                                                                                                                                cGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTATCGACCCGTACaa  <  2:2143696/140‑1 (MQ=255)
                                                                                                                                cGGAAATCCTGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTATCGACCCGTACaa  <  2:1410237/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                  
GAGATTGGGTGGTGGTCGGCAGTACGCCACAGGAGATGCTCGACGCGGGCTACCAGCAGGTAGGCCGCGATTTTCCTGTGTTTCTGCATCCGCAAACGCATGAAGAGTATGCGCTGGCACGTACCGAACGGAAATCCGGTTCCGGTTACACCGGTTTTACTTGCTATGCCGCACCGGATGTCACGCTGGAAGATGATCTTAAGCGTCGCGATCTGACCATTAATGCGCTGGCCCAGGACGATAACGGCGAGATTATCGACCCGTACAA  >  NC_000913/3201955‑3202222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A