Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,217,945 G→T R378S (CGT→AGT)  aer ← aerotaxis sensor receptor, flavoprotein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,217,9450GT100.0% 398.9 / NA 120R378S (CGT→AGT) aeraerotaxis sensor receptor, flavoprotein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (56/64);  total (56/64)

Only 100 of 135 total aligned reads displayed.

CTGCGAACCGGATTGCACCTTATCAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCC  >  NC_000913/3217808‑3218081
                                                                                                                                         |                                                                                                                                        
ctgcGAACCGGATTGCACCTTATCAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCActcg                                                                                                                                        >  2:1881758/1‑140 (MQ=255)
  gcGAACCGGATTGCACCTTATCAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTcgcc                                                                                                                                      >  1:673123/1‑140 (MQ=255)
  gcGAACCGGATTGCACCTTATCAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTcgcc                                                                                                                                      >  1:970951/1‑140 (MQ=255)
  gcGAACCGGATTGCACCTTATCAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTcgcc                                                                                                                                      >  2:2128420/1‑140 (MQ=255)
     aaCCGGATTGCACCTTATCAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCt                                                                                                                                   >  2:1888057/1‑140 (MQ=255)
     aaCCGGATAGCACCTTATCAGCACTGGCAACAATCAGCTTGCAAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTCCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCt                                                                                                                                   <  2:1940878/140‑1 (MQ=255)
         ggATTGCACCTTATCAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCa                                                                                                                               <  1:1881758/140‑1 (MQ=255)
           aTTGCACCTTATCAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCAcc                                                                                                                             >  1:1940878/1‑140 (MQ=255)
                   ttATCAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCAtt                                                                                                                     <  2:216763/140‑1 (MQ=255)
                    tataAGCACGGGCATAAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCGGGCTAAAGGACGCACTTCCCCTGCCCCCACTGCAAAACCTTTGCCCTGTTCGCGGGCACTCGCCGCTTCCACCGCCGCATTc                                                                                                                    <  2:1023907/140‑1 (MQ=255)
                    tATCAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTc                                                                                                                    >  1:1696531/1‑140 (MQ=255)
                    tATCAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTc                                                                                                                    >  1:2137695/1‑140 (MQ=255)
                    tATCAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCACCGCATTc                                                                                                                    <  1:136136/140‑1 (MQ=255)
                     aTCAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCa                                                                                                                   >  2:1546561/1‑140 (MQ=255)
                      tCAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCCCTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAg                                                                                                                  <  2:5413/140‑1 (MQ=255)
                      tCAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAg                                                                                                                  <  1:1680794/140‑1 (MQ=255)
                      tCAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAg                                                                                                                  <  1:1362809/140‑1 (MQ=255)
                       cAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAgg                                                                                                                 <  2:1198406/140‑1 (MQ=255)
                         gCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGc                                                                                                               <  1:1800517/140‑1 (MQ=255)
                         gCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGc                                                                                                               <  1:65493/140‑1 (MQ=255)
                         gCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGc                                                                                                               >  1:289792/1‑140 (MQ=255)
                          cACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTT‑CCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCa                                                                                                             >  1:1082192/1‑140 (MQ=255)
                               gCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCATTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAat                                                                                                         >  2:1955183/1‑140 (MQ=255)
                               gCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAat                                                                                                         >  1:84166/1‑140 (MQ=255)
                                   caatcaGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAACCCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTg                                                                                                     <  2:673123/140‑1 (MQ=255)
                                    aatcaGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTgt                                                                                                    >  2:93359/1‑139 (MQ=255)
                                         gCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGa                                                                                               >  1:334943/1‑140 (MQ=255)
                                         gCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGa                                                                                               >  2:1153489/1‑140 (MQ=255)
                                         gCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGa                                                                                               >  1:657736/1‑140 (MQ=255)
                                           ttGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCCCCACTGCAAACCCTTGGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGaaa                                                                                             <  2:444178/140‑1 (MQ=255)
                                               aaaTATCGTTGGCAGATTTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCGGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCa                                                                                         <  2:657736/139‑1 (MQ=255)
                                                aaTATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAACCCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCaa                                                                                        <  1:1285124/140‑1 (MQ=255)
                                                aaTATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCCCTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCaa                                                                                        <  1:943125/140‑1 (MQ=255)
                                                aaTATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCaa                                                                                        <  2:870226/140‑1 (MQ=255)
                                                aaTATCGTTGGCAGCATTAGCCCTGGGGTGGGCTAAATGACGCACTTCCCCTGCCACCACTGAAAAACTTTTGCCATTTCCGCAGACACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCaa                                                                                        <  2:789247/140‑1 (MQ=37)
                                                aaTATCGTTGGAAGCATTAGCGCTGCGGCTGGTTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCaa                                                                                        <  1:1153489/140‑1 (MQ=255)
                                                  aatCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCCCTCCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAata                                                                                      <  2:687797/139‑1 (MQ=255)
                                                     cGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCCCCACTGCAAACCCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCg                                                                                   <  1:929856/140‑1 (MQ=255)
                                                     cGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCg                                                                                   <  1:325751/140‑1 (MQ=255)
                                                       ttGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCATCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGtt                                                                                 >  1:137487/1‑140 (MQ=255)
                                                        tGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTa                                                                                >  1:2000645/1‑140 (MQ=255)
                                                           cagcaTTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATc                                                                             <  1:1514009/140‑1 (MQ=255)
                                                            agcaTTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCa                                                                            >  1:564408/1‑140 (MQ=255)
                                                             gcaTTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAg                                                                           <  2:1423370/140‑1 (MQ=255)
                                                              caTTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGc                                                                          >  2:493524/1‑140 (MQ=255)
                                                               aTTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCg                                                                         <  1:1888057/140‑1 (MQ=255)
                                                               aTTAGCGATGCGGCTGGGAAAATGACGCACTTCCCCTGCAACCACTGCAAAACCTTTGCGCTGTTCGCCGGCACTCGCCGCTTCCGCCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCg                                                                         <  2:1131348/140‑1 (MQ=37)
                                                                ttggcgcGGCGGCTGCTTAAATGACCCCTTTCCCCTGCCACCACTGCAAAACCTTGCCCCTGTTCGCCGGCCTTCGCCGTTTCAACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGa                                                                        <  2:557380/137‑1 (MQ=21)
                                                                        gCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCCCTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATgg                                                                <  2:807798/140‑1 (MQ=255)
                                                                        gCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATgg                                                                <  1:2009966/140‑1 (MQ=255)
                                                                        gCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATgg                                                                >  1:1772542/1‑140 (MQ=255)
                                                                        gCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATgg                                                                >  1:361489/1‑140 (MQ=255)
                                                                        gCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTCTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATgg                                                                >  1:834231/1‑140 (MQ=255)
                                                                        gCGACTGGCTAAATGACCCCCTCCCCCGGCCCCCACGGAAAACCCTTTGCCTTTATCGCGGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATgg                                                                <  2:2137695/140‑1 (MQ=25)
                                                                         cGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGt                                                               >  1:429857/1‑140 (MQ=255)
                                                                             tggctAAATGACGCACTCCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCa                                                           <  1:1546561/140‑1 (MQ=255)
                                                                               gctAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAAt                                                         <  2:334943/140‑1 (MQ=255)
                                                                                 tAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCACCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATgc                                                       <  2:1281993/140‑1 (MQ=255)
                                                                                  aaaTGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCCCTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATgcg                                                      <  2:289792/140‑1 (MQ=255)
                                                                                  aaaTGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATgcg                                                      <  1:907750/140‑1 (MQ=255)
                                                                                  aaaCGACGCACTGCCCCTACCACCACGGCAAAACCTTTGCCCTGTACGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATgcg                                                      <  2:429857/140‑1 (MQ=38)
                                                                                       aCGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTggg                                                 <  2:970951/140‑1 (MQ=255)
                                                                                         gCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTa                                               <  2:564408/140‑1 (MQ=255)
                                                                                          cACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTAc                                              >  2:820268/1‑140 (MQ=255)
                                                                                           cttcccccTCCCACCACTGAAAAACTTTTGCCCTGTCCGCCGGCCCTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACt                                             <  2:1032158/136‑1 (MQ=38)
                                                                                           aCTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACt                                             <  1:1061326/140‑1 (MQ=255)
                                                                                                cccTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCgg                                        <  2:1772542/140‑1 (MQ=255)
                                                                                                  cTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCg                                      <  2:84166/140‑1 (MQ=255)
                                                                                                  cTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCg                                      >  1:1488360/1‑140 (MQ=255)
                                                                                                     ccaccaCTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGAATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGata                                   <  1:2128420/140‑1 (MQ=255)
                                                                                                      caccacTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGatat                                  <  2:1488360/140‑1 (MQ=255)
                                                                                                         cacTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATc                                 <  2:832368/138‑1 (MQ=255)
                                                                                                         cacTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATc                                 >  1:832368/1‑138 (MQ=255)
                                                                                                         cacTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGt                               >  2:1727725/1‑140 (MQ=255)
                                                                                                         cacTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGt                               >  1:1682967/1‑140 (MQ=255)
                                                                                                          acTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTc                              >  2:596742/1‑140 (MQ=255)
                                                                                                           cTGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTcc                             >  2:1298341/1‑140 (MQ=255)
                                                                                                            tgaaaaaCCTTTGCCCTGTTCGCGGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCa                            <  2:2139628/137‑1 (MQ=255)
                                                                                                            tGCAAACCCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCa                            <  2:87460/140‑1 (MQ=255)
                                                                                                            tGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCa                            <  1:493524/140‑1 (MQ=255)
                                                                                                            tGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCa                            <  1:592095/140‑1 (MQ=255)
                                                                                                            tGCAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCa                            <  2:2000645/140‑1 (MQ=255)
                                                                                                            agCAAAACTTTCGCCTTGTTCGCGGGAACTCGCCGCTGCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTGAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCa                            <  2:31454/139‑1 (MQ=38)
                                                                                                              cAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCa                            >  2:2091924/1‑138 (MQ=255)
                                                                                                              cAAAACCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCa                            <  1:2091924/138‑1 (MQ=255)
                                                                                                              aaaaaCCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCAtt                          <  2:475724/139‑1 (MQ=255)
                                                                                                                 aaCCTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTc                       <  2:834231/140‑1 (MQ=255)
                                                                                                                   ccTTTGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCtt                     >  1:185059/1‑140 (MQ=255)
                                                                                                                      ttGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGAt                  >  2:906458/1‑140 (MQ=255)
                                                                                                                      ttGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGAt                  >  2:675311/1‑140 (MQ=255)
                                                                                                                      ttGCCCTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGAt                  >  2:340644/1‑140 (MQ=255)
                                                                                                                           cTGTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCg             <  1:1060254/140‑1 (MQ=255)
                                                                                                                             gTTCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCa                            <  1:1112135/123‑1 (MQ=255)
                                                                                                                              ttCGCCGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTgg          >  1:881129/1‑140 (MQ=255)
                                                                                                                                  ccGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCAt      <  1:979186/140‑1 (MQ=255)
                                                                                                                                  ccGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCAt      <  2:1361098/140‑1 (MQ=255)
                                                                                                                                   cGGCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATc     >  2:646771/1‑140 (MQ=255)
                                                                                                                                    ggCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCg    <  1:596742/140‑1 (MQ=255)
                                                                                                                                    ggCACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCg    <  2:185059/140‑1 (MQ=255)
                                                                                                                                      cACTCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGcc  >  2:382727/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                        
CTGCGAACCGGATTGCACCTTATCAGCACTGGCATCAATCAGCTTGCGAATATCGTTGGCAGCATTAGCGCTGCGGCTGGCTAAATGACGCACTTCCCCTGCCACCACTGCAAAACCTTTGCCCTGTTCGCCGGCACGCGCCGCTTCCACCGCCGCATTCAGGGCCAGAATATTGGTCTGAAACGCAATATCGTTAATCAGCGAAGTAATGGTGCCAATGCGCTGGGTACTGTCGGCGATATCGTCCATTGTCTTGATCACCGTGGTCATCGCC  >  NC_000913/3217808‑3218081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A