Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,219,441	C→A	intergenic (‑365/‑53)	aer ← / → patA	aerotaxis sensor receptor, flavoprotein/putrescine aminotransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,219,441	0	C	A	99.2%	450.4 / NA	133	intergenic (‑365/‑53)	aer/patA	aerotaxis sensor receptor, flavoprotein/putrescine aminotransferase
Reads supporting (aligned to +/- strand): ref base C (0/0); major base A (67/64); minor base G (0/1); total (67/66)
Fisher's exact test for biased strand distribution p-value = 4.92e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 136 total aligned reads displayed.

ATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATCCCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGAATCTCATTGAGAAGCGAACGCTGGATCAT  >  NC_000913/3219307‑3219577

atcatcAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGc                                                                                                                                     <  1:328152/140‑1 (MQ=255)

atcatcAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGc                                                                                                                                     >  1:142141/1‑140 (MQ=255)

atcatcAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGc                                                                                                                                     >  1:1185776/1‑140 (MQ=255)

 tcatcaAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCa                                                                                                                                    <  1:1764913/140‑1 (MQ=255)

 tcatcaAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCa                                                                                                                                    <  1:471937/140‑1 (MQ=255)

   atcaAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAAt                                                                                                                                  >  2:1091120/1‑140 (MQ=255)

   atcaAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAAt                                                                                                                                  >  1:779207/1‑140 (MQ=255)

      aaaTCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATTCCTGCAATACt                                                                                                                               <  1:1180756/140‑1 (MQ=255)

        aTCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTa                                                                                                                             >  1:452077/1‑140 (MQ=255)

        aTCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTa                                                                                                                             >  1:1875545/1‑140 (MQ=255)

           cATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAAt                                                                                                                          <  1:665643/140‑1 (MQ=255)

             tACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCa                                                                                                                                    <  1:1952880/128‑1 (MQ=255)

             tACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCa                                                                                                                                    >  2:1952880/1‑128 (MQ=255)

             tACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCg                                                                                                                        >  1:1695291/1‑140 (MQ=255)

             aaCCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGACTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCg                                                                                                                        <  1:1919282/139‑1 (MQ=255)

               cccGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGt                                                                                                                      <  1:640511/140‑1 (MQ=255)

                ccGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTa                                                                                                                     <  2:1966968/140‑1 (MQ=255)

                  gACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATc                                                                                                                   <  2:2106812/140‑1 (MQ=255)

                   aCAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATGCCTGCAATACTTAAATCGGTATCa                                                                                                                  <  1:1213691/140‑1 (MQ=255)

                   aCAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATct                                                                                                                  >  2:598227/1‑139 (MQ=255)

                   aCAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCa                                                                                                                  <  2:1503034/140‑1 (MQ=255)

                    cAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCAt                                                                                                                 <  1:1906316/140‑1 (MQ=255)

                       aaaCCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATTCTTAAATCGGTATCAtgtg                                                                                                              >  2:1996450/1‑140 (MQ=255)

                            gTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATAcg                                                                                                         >  2:165631/1‑140 (MQ=255)

                              gCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATAcgcg                                                                                                       >  1:465090/1‑140 (MQ=255)

                               cAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGa                                                                                                      <  2:1695291/140‑1 (MQ=255)

                                   aTAACAACAAATGTTAACAGATAGCATTAAATATTGCGCAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCt                                                                                                  <  1:1679984/140‑1 (MQ=255)

                                   aTAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCt                                                                                                  <  1:1152896/140‑1 (MQ=255)

                                    aaacaacAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTc                                                                                                 <  2:812179/139‑1 (MQ=255)

                                     aacaacAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTcc                                                                                                <  1:598227/140‑1 (MQ=255)

                                          caaATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATTCTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGc                                                                                           <  2:1604014/140‑1 (MQ=255)

                                          caaATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGc                                                                                           <  2:1956171/140‑1 (MQ=255)

                                          caaATGTTAACAGATAGCATTAAATATTACACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCTCAGCCGGAGTGGCTCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGc                                                                                           <  2:2017932/140‑1 (MQ=255)

                                          aaaaTGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGc                                                                                           <  2:618120/139‑1 (MQ=255)

                                            aaTGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCat                                                                                         >  1:1152320/1‑140 (MQ=255)

                                                    cAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGaa                                                                                 <  1:414781/140‑1 (MQ=255)

                                                    aaGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGaa                                                                                 <  2:138713/139‑1 (MQ=255)

                                                    aaGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTACGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATAATTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGaa                                                                                 <  2:810270/139‑1 (MQ=255)

                                                     aGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGc                                                                                           <  1:1247376/129‑1 (MQ=255)

                                                       aTAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAg                                                                              >  1:490273/1‑140 (MQ=255)

                                                        tAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAgg                                                                             >  2:121430/1‑140 (MQ=255)

                                                         aGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGt                                                                            >  2:175823/1‑140 (MQ=255)

                                                         aGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGt                                                                            >  1:1891233/1‑140 (MQ=255)

                                                          gCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGTAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGtt                                                                           >  1:1741541/1‑140 (MQ=255)

                                                          gCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGtt                                                                           >  2:1841967/1‑140 (MQ=255)

                                                              tAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCt                                                                       >  1:1170343/1‑140 (MQ=255)

                                                              tAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTCTGAACAGGTTACCt                                                                       >  1:336217/1‑140 (MQ=255)

                                                                  tatTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGa                                                                   <  1:829722/140‑1 (MQ=255)

                                                                     tGCACAAATGTTAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGTCGTGACGCAATACCTGCAAAACTTAAATCGAAATCATGTGATATGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAgcg                                                                >  2:1173666/1‑140 (MQ=255)

                                                                     tGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGaa                                                                                 <  2:400401/123‑1 (MQ=255)

                                                                     tGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGaa                                                                                 >  1:400401/1‑123 (MQ=255)

                                                                     tGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAgg                                                                             <  2:670426/127‑1 (MQ=255)

                                                                     tGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAgg                                                                             >  1:670426/1‑127 (MQ=255)

                                                                     tGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAgct                                                                >  2:376080/1‑139 (MQ=255)

                                                                     tGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAgcg                                                                >  2:788683/1‑140 (MQ=255)

                                                                     tGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAgcg                                                                >  1:1414519/1‑140 (MQ=255)

                                                                     tGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAgcg                                                                >  2:614879/1‑140 (MQ=255)

                                                                       cacaAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCa                                                              >  1:607169/1‑140 (MQ=255)

                                                                       cacaAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCa                                                              >  1:1926142/1‑140 (MQ=255)

                                                                        acaAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCAt                                                             <  1:2070836/140‑1 (MQ=255)

                                                                            aTGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGc                                                         >  2:1221017/1‑140 (MQ=255)

                                                                            aTGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGc                                                         >  1:10437/1‑140 (MQ=255)

                                                                            aTGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCCAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGc                                                         >  1:2084590/1‑140 (MQ=255)

                                                                                 aaCCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAg                                                    >  1:1075118/1‑140 (MQ=255)

                                                                                 aaCCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAg                                                    >  1:1181078/1‑140 (MQ=255)

                                                                                      aaTTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGc                                               >  1:1703368/1‑140 (MQ=255)

                                                                                      aaTTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGc                                               >  2:251391/1‑140 (MQ=255)

                                                                                      aaTTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGc                                               >  2:750408/1‑140 (MQ=255)

                                                                                      aaTTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGc                                               >  2:1132694/1‑140 (MQ=255)

                                                                                       aTTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCGATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCa                                              >  2:1082336/1‑140 (MQ=255)

                                                                                       aTTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCa                                              <  1:270014/140‑1 (MQ=255)

                                                                                        tttGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAg                                             <  2:349321/140‑1 (MQ=255)

                                                                                            tgtTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGcc                                         <  2:133324/140‑1 (MQ=255)

                                                                                             gtTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGccc                                        <  2:465090/140‑1 (MQ=255)

                                                                                              tttATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCa                                       <  2:1891233/140‑1 (MQ=255)

                                                                                              tttATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCa                                       <  2:1181078/140‑1 (MQ=255)

                                                                                                tATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACg                                     <  2:13235/140‑1 (MQ=255)

                                                                                                 aTCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGc                                    >  2:1017117/1‑140 (MQ=255)

                                                                                                 aTCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGc                                    >  2:212367/1‑140 (MQ=255)

                                                                                                  tCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGGGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGcc                                   <  1:1968786/140‑1 (MQ=255)

                                                                                                  tCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAgcg                                           >  2:1220213/1‑132 (MQ=255)

                                                                                                  acccGATTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGcc                                   <  2:706480/139‑1 (MQ=255)

                                                                                                       aTTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGat                              >  2:953226/1‑139 (MQ=255)

                                                                                                       aTTTTCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGaa                              <  1:1132694/140‑1 (MQ=255)

                                                                                                        ttttCGCGATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGAAt                             >  1:1591413/1‑140 (MQ=255)

                                                                                                            cgcgATCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGAATCTCa                         >  1:2050842/1‑140 (MQ=255)

                                                                                                                aTCGCAGCCGGAGTGGCGCGATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGAATCTCATTga                     <  1:1082336/140‑1 (MQ=255)

                                                                                                                aTCGCAGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGAATCTCATTga                     <  2:984598/140‑1 (MQ=255)

                                                                                                                     aGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGAATCTCATTGAGAAGc                <  1:121430/140‑1 (MQ=255)

                                                                                                                     aGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGAATCTCATTGAGAAGc                <  2:1591413/140‑1 (MQ=255)

                                                                                                                     aGCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGAATCTCATTGAGAAGc                <  2:142141/140‑1 (MQ=255)

                                                                                                                      gCCGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGAATCTCATTGAGAAGCg               <  1:251391/140‑1 (MQ=255)

                                                                                                                        cGGAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGAATCTCATTGAGAAGCGaa             <  1:953226/140‑1 (MQ=255)

                                                                                                                         ggAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGAATCTCATTGAGAAGCGAAc            <  2:504178/140‑1 (MQ=255)

                                                                                                                         ggAGTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGAATCTCATTGAGAAGCGAAc            <  2:2063710/140‑1 (MQ=255)

                                                                                                                            gTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCCTCGGCTTTAGCGTGCAGCGCACACGCCCTGAATCTCATTGAGAAGCGAACGCt         <  1:2020623/140‑1 (MQ=255)

                                                                                                                            gTGGCGCAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGAATCTCATTGAGAAGCGAACGCt         <  1:165631/140‑1 (MQ=255)

                                                                                                                            gTGGCGCAATACCTGCAATACTTAAAACGGTATCATGTGATACGCGAGACTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGAATCTCATTGAGAAGCGAACGCt         <  1:127756/140‑1 (MQ=255)

                                                                                                                                cgcAATACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGAATCTCATTGAGAAGCGAACGCTGGAt     >  2:1403837/1‑140 (MQ=255)

                                                                                                                                   aaTACCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGAATCTCATTGAGAAGCGAACGCTGGATCAt  <  1:212367/140‑1 (MQ=255)

ATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGATTTTCGCGATCGCAGCCGGAGTGGCGCAATCCCTGCAATACTTAAATCGGTATCATGTGATACGCGAGCCTCCGGAGCATATTTTGAACAGGTTACCTTCGAGCGCATCGGCTTTAGCGTGCAGCGCCCACGCCCTGAATCTCATTGAGAAGCGAACGCTGGATCAT  >  NC_000913/3219307‑3219577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A