Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,227,142	G→T	W303C (TGG→TGT)	ygjI →	putative transporter YgjI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,227,142	0	G	T	100.0%	299.3 / NA	88	W303C (TGG→TGT)	ygjI	putative transporter YgjI
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (56/32); total (56/32)

ATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTG  >  NC_000913/3227016‑3227274

aTTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCgg                                                                                                                         <  1:591849/140‑1 (MQ=255)

   tACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCGTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGa                                                                                                                      >  1:802994/1‑140 (MQ=255)

   tACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGa                                                                                                                      <  2:422098/140‑1 (MQ=255)

   tACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGa                                                                                                                      >  1:1727422/1‑140 (MQ=255)

   tACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGa                                                                                                                      >  1:1638071/1‑140 (MQ=255)

        gcggATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAAtt                                                                                                                 >  1:2013010/1‑140 (MQ=255)

                    aGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCTACGCCGGTGAAAATTTTCTTCTCCGaa                                                                                                     <  1:1743947/140‑1 (MQ=255)

                     ggTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGaaa                                                                                                    <  2:633567/140‑1 (MQ=255)

                      gTATTCCACGGCATGGCGTCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAAt                                                                                                   >  2:939078/1‑140 (MQ=255)

                          tCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCg                                                                                               >  1:1391345/1‑140 (MQ=255)

                           ccACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCgg                                                                                              >  2:1841994/1‑140 (MQ=255)

                           ccACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCgg                                                                                              >  1:1902040/1‑140 (MQ=255)

                           ccACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCgg                                                                                              >  1:340717/1‑140 (MQ=255)

                           ccACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCgg                                                                                              <  1:975545/140‑1 (MQ=255)

                           ccACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCgg                                                                                              >  2:280478/1‑140 (MQ=255)

                           ccACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCgg                                                                                              >  2:39268/1‑140 (MQ=255)

                           ccACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCgg                                                                                              >  2:420576/1‑140 (MQ=255)

                           ccACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCgg                                                                                              >  2:955630/1‑140 (MQ=255)

                           ccACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCgg                                                                                              >  1:1749632/1‑140 (MQ=255)

                           ccACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCgg                                                                                              >  1:1486626/1‑140 (MQ=255)

                               ggCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAgg                                                                                          >  2:623434/1‑140 (MQ=255)

                               ggCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAgg                                                                                          <  2:1606286/140‑1 (MQ=255)

                                gCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGc                                                                                         >  1:1125339/1‑140 (MQ=255)

                                gCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGc                                                                                         >  2:72557/1‑140 (MQ=255)

                                gCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGc                                                                                         >  1:2100861/1‑140 (MQ=255)

                                 cATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCa                                                                                        >  1:51578/1‑140 (MQ=255)

                                    ggcggcGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCt                                                                                     <  2:1056919/140‑1 (MQ=255)

                                    ggcggcGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCt                                                                                     >  1:991966/1‑140 (MQ=255)

                                    ggcggcGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCt                                                                                     <  2:2013010/140‑1 (MQ=255)

                                    ggcggcGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCt                                                                                     >  1:740138/1‑140 (MQ=255)

                                              tttGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGaa                                                                           <  1:855555/140‑1 (MQ=255)

                                                tGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGaaaa                                                                         <  2:107077/140‑1 (MQ=255)

                                                tGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGaaaa                                                                         >  1:1633662/1‑140 (MQ=255)

                                                     tACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTc                                                                    >  1:146922/1‑140 (MQ=255)

                                                       ccGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGa                                                                  >  2:2000188/1‑140 (MQ=255)

                                                       ccGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGa                                                                  >  1:231158/1‑140 (MQ=255)

                                                          gAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACt                                                               >  1:914460/1‑140 (MQ=255)

                                                                 tgatgaATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGaa                                                        >  2:1183271/1‑140 (MQ=255)

                                                                  gatgaATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGaaa                                                       >  1:747560/1‑140 (MQ=255)

                                                                        tCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCg                                                 >  1:1766370/1‑140 (MQ=255)

                                                                        tCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCg                                                 >  1:182191/1‑140 (MQ=255)

                                                                          gCTTTGTCGGTCTGGTGTCCTTTTCCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGtt                                               <  2:231158/140‑1 (MQ=255)

                                                                          gCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGtt                                               >  2:220882/1‑140 (MQ=255)

                                                                             ttGTCGGTCTGGTGTCCTTTACTGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCg                                            >  1:278445/1‑140 (MQ=255)

                                                                             ttGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCg                                            >  1:347840/1‑140 (MQ=255)

                                                                                  ggTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGgcgcg                                       >  1:1490945/1‑140 (MQ=255)

                                                                                  cgTCTGGAGTCCTTTGCAGCGATAATCGGTTACCTCCTGAAATGAACCGCAACGGCGGTGAAAATTTTCATCACCGAAATCCCCGAAGGCAACTTTGGTAAGAAAACCGTCGAACTGATCGAAAACGGCTTTCCGgcgcg                                       <  2:1391345/139‑1 (MQ=255)

                                                                                    tCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGgcgcgcg                                     <  2:260175/140‑1 (MQ=255)

                                                                                     cTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGgcgcgcgc                                    <  1:1131759/140‑1 (MQ=255)

                                                                                     cTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGgcgcgcgc                                    <  2:1934113/140‑1 (MQ=255)

                                                                                     cTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGgcgcgcgc                                    <  2:2137646/140‑1 (MQ=255)

                                                                                      tGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCa                                   >  2:1043163/1‑140 (MQ=255)

                                                                                       ggTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAg                                  <  1:220882/140‑1 (MQ=255)

                                                                                        gtgtCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGc                                 >  2:246409/1‑140 (MQ=255)

                                                                                           tCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTg                              <  2:1727422/140‑1 (MQ=255)

                                                                                           tCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTg                              <  2:1902040/140‑1 (MQ=255)

                                                                                           tCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTg                              <  1:1515517/140‑1 (MQ=255)

                                                                                               ttACTGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATc                          <  2:278445/140‑1 (MQ=255)

                                                                                               ttACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATc                          <  1:246409/140‑1 (MQ=255)

                                                                                                tACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATcc                         >  1:1404187/1‑140 (MQ=255)

                                                                                                tACCGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATcc                         >  2:1761832/1‑140 (MQ=255)

                                                                                                  ccGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAg                       >  1:934404/1‑140 (MQ=255)

                                                                                                  ccGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAg                       >  1:1524187/1‑140 (MQ=255)

                                                                                                  ccGCGATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAg                       >  1:583542/1‑140 (MQ=255)

                                                                                                   cgcgATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGt                      <  2:934404/140‑1 (MQ=255)

                                                                                                     cgATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTc                    >  1:1582051/1‑140 (MQ=255)

                                                                                                     cgATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTc                    >  2:1970989/1‑140 (MQ=255)

                                                                                                     cgATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTc                    >  2:468478/1‑140 (MQ=255)

                                                                                                     cgATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTc                    >  1:43083/1‑140 (MQ=255)

                                                                                                     cgATGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTc                    >  1:506129/1‑140 (MQ=255)

                                                                                                       aTGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCt                  <  2:1486626/140‑1 (MQ=255)

                                                                                                       aTGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCt                  >  1:1581715/1‑140 (MQ=255)

                                                                                                       aTGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCt                  <  1:1841994/140‑1 (MQ=255)

                                                                                                       aTGTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCt                  >  2:408593/1‑140 (MQ=255)

                                                                                                         gTTCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCTGa                >  1:586910/1‑140 (MQ=255)

                                                                                                          ttCGGTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCTGAt               <  2:498662/140‑1 (MQ=255)

                                                                                                             ggTTCCCTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCTGATCGt            <  2:1465447/140‑1 (MQ=255)

                                                                                                                 cccTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCTGATCGTCATc        <  2:583542/140‑1 (MQ=255)

                                                                                                                  ccTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCTGATCGTCAt         <  2:1652154/138‑1 (MQ=255)

                                                                                                                  ccTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCTGATCGTCAt         >  1:1652154/1‑138 (MQ=255)

                                                                                                                  ccTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCTGATCGTCATcc       >  1:1529910/1‑140 (MQ=255)

                                                                                                                  ccTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCTGATCGTCATcc       >  2:824190/1‑140 (MQ=255)

                                                                                                                  ccTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCTGATCGTCATcc       >  2:845325/1‑140 (MQ=255)

                                                                                                                  ccTGCTGATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCTGATCGTCATcc       >  2:1284088/1‑140 (MQ=255)

                                                                                                                    tgctgATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCg     <  2:802994/140‑1 (MQ=255)

                                                                                                                    tgctgATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCg     <  1:1043163/140‑1 (MQ=255)

                                                                                                                      ctgATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCt   <  2:146922/140‑1 (MQ=255)

                                                                                                                      ctgATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCt   <  1:72557/140‑1 (MQ=255)

                                                                                                                       tgATGTGTACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCtg  >  2:2089533/1‑140 (MQ=255)

ATTTACCGGCGGATCGGTGCAGGTATTCCACGGCATGGCGGCGTATTTTGGTCTACCGGAAGCGTTGATGAATCGCTTTGTCGGTCTGGTGTCCTTTACCGCGATGTTCGGTTCCCTGCTGATGTGGACCGCAACGCCGGTGAAAATTTTCTTCTCCGAAATCCCGGAAGGCATCTTTGGTAAGAAAACCGTCGAACTGAACGAAAACGGCGTTCCGGCGCGCGCAGCGTGGATCCAGTTCCTGATCGTCATCCCGCTG  >  NC_000913/3227016‑3227274

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A