Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F48 I1 R1 70 151.6 5072932 98.7% 5006983 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,229,438 C→A P184H (CCT→CAT)  ygjK → glycoside hydrolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,229,4380CA100.0% 450.1 / NA 126P184H (CCT→CAT) ygjKglycoside hydrolase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (57/69);  total (57/69)

Only 100 of 130 total aligned reads displayed.

CGCGCACGTCACTACTGGAAACCAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCCTGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAGGTGCATAAATCCCTGCCGGTGCAGACTGA  >  NC_000913/3229303‑3229573
                                                                                                                                       |                                                                                                                                       
    cACGTCACTACTGGAAACCAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATc                                                                                                                                 <  2:2151553/140‑1 (MQ=255)
         cACTACTGGAAACCAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAgcgc                                                                                                                            <  1:1716177/140‑1 (MQ=255)
            tactGGAAACCAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCaaa                                                                                                                         >  1:2130915/1‑140 (MQ=255)
                 gAAACCAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCat                                                                                                                    >  2:1432083/1‑139 (MQ=255)
                 gAAACCAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAg                                                                                                                    >  1:1108849/1‑140 (MQ=255)
                 gAAACCAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAg                                                                                                                    >  1:2305012/1‑140 (MQ=255)
                 gAAACCAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAg                                                                                                                    >  1:2530976/1‑140 (MQ=255)
                 gAAACCAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAg                                                                                                                    >  1:257718/1‑140 (MQ=255)
                 gAAACCAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAg                                                                                                                    >  1:183125/1‑140 (MQ=255)
                 gAAACCAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGG‑AACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAgc                                                                                                                   >  1:1552614/1‑140 (MQ=255)
                  aaaCCAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAgc                                                                                                                   <  2:1763734/140‑1 (MQ=255)
                  aaaCCAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAgc                                                                                                                   <  2:2214684/140‑1 (MQ=255)
                   aaCCAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAgcg                                                                                                                  <  2:2210622/140‑1 (MQ=255)
                   aaCCAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAgcg                                                                                                                  <  2:15839/140‑1 (MQ=255)
                     ccAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGcc                                                                                                                <  1:2446805/140‑1 (MQ=255)
                     ccAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGcc                                                                                                                >  1:1190373/1‑140 (MQ=255)
                      cAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCa                                                                                                               >  1:792966/1‑140 (MQ=255)
                      cAAAATCACCAGCAATAAACCGCTGGAACTGGTGTGGGACGGCGAACTGCTGGAAAAACTCGAACCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCa                                                                                                               >  1:2427047/1‑140 (MQ=255)
                         aaTCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCAccc                                                                                                            >  2:450666/1‑140 (MQ=255)
                           tCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGt                                                                                                          >  2:2245987/1‑140 (MQ=255)
                             aCCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGa                                                                                                        <  2:2530976/140‑1 (MQ=255)
                                aGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATgg                                                                                                     >  1:2525474/1‑140 (MQ=255)
                                aGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATgg                                                                                                     >  2:971105/1‑140 (MQ=255)
                                 gCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGG‑AACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGcc                                                                                                   <  2:1552614/140‑1 (MQ=255)
                                  cAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGcc                                                                                                   <  1:29133/140‑1 (MQ=255)
                                     tAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGa                                                                                                <  1:252540/140‑1 (MQ=255)
                                        aCCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAg                                                                                             <  2:362367/140‑1 (MQ=255)
                                         ccGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGTAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGt                                                                                            <  2:2427047/140‑1 (MQ=255)
                                         ccGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGt                                                                                            >  2:1382946/1‑140 (MQ=255)
                                         ccGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGt                                                                                            <  2:2158577/140‑1 (MQ=255)
                                            cTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCAc                                                                                         >  1:2534388/1‑140 (MQ=255)
                                            cTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCAc                                                                                         >  2:1929704/1‑140 (MQ=255)
                                            cTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCAc                                                                                         >  2:2088885/1‑140 (MQ=255)
                                            cTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCAc                                                                                         >  2:2258965/1‑140 (MQ=255)
                                             tGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGATGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAGGTCAcc                                                                                        >  1:1779296/1‑140 (MQ=255)
                                             tGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCAcc                                                                                        >  1:1243827/1‑140 (MQ=255)
                                               gATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCtt                                                                                      >  1:784925/1‑140 (MQ=255)
                                                 tCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTg                                                                                    >  2:980857/1‑140 (MQ=255)
                                                    ggTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCa                                                                                 <  2:19498/140‑1 (MQ=255)
                                                      tgtgGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCaaa                                                                               <  2:1628350/140‑1 (MQ=255)
                                                      tgtgGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCaaa                                                                               >  1:983646/1‑140 (MQ=255)
                                                       gtgGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCaaat                                                                              >  2:1700543/1‑139 (MQ=255)
                                                         gggACGGGGAACTGCTGGAAGAACTGGAAGCGAAAGAAGGGAAACCGCTTTCGGATAAAACCATTGATGGCGAATACCATGACTATAAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTg                                                                            >  2:2378912/1‑140 (MQ=255)
                                                         gggACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTg                                                                            >  1:1613509/1‑140 (MQ=255)
                                                         gggACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTg                                                                            >  1:156341/1‑140 (MQ=255)
                                                         gggACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTg                                                                            >  2:1278401/1‑140 (MQ=255)
                                                          ggACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTgc                                                                           >  2:2399161/1‑140 (MQ=255)
                                                          ggACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTgc                                                                           >  1:205174/1‑140 (MQ=255)
                                                           gACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTAGGCAAAGTgcg                                                                          >  2:563861/1‑140 (MQ=255)
                                                            aCGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAACCCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTgcgc                                                                         <  1:1721356/140‑1 (MQ=255)
                                                            aCGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTgcgc                                                                         <  1:2245987/140‑1 (MQ=255)
                                                             cGGCGAACTGGTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGACTGAAAGTCTCCTTTGGCAAAGTgcgcg                                                                        <  2:445893/140‑1 (MQ=255)
                                                             cGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTgcgcg                                                                        <  2:774450/140‑1 (MQ=255)
                                                             cGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTgcgcg                                                                        <  1:2088885/140‑1 (MQ=255)
                                                             cGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTgcgcg                                                                        <  1:2094089/140‑1 (MQ=255)
                                                             cGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTCTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTgcgcg                                                                        <  2:2083508/140‑1 (MQ=255)
                                                              ggCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAATCCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCATGAAAGTCCCCTTTGGCAAAGTgcgcgc                                                                       <  2:2316801/140‑1 (MQ=255)
                                                              ggCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTgcgcgg                                                                       <  1:1432083/140‑2 (MQ=255)
                                                              ggCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTgcgcgc                                                                       <  2:792966/140‑1 (MQ=255)
                                                              ggCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTgcgcgc                                                                       <  2:156341/140‑1 (MQ=255)
                                                              ggCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTgcgcgc                                                                       <  2:712273/140‑1 (MQ=255)
                                                               gCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGcc                                                                      >  1:459270/1‑140 (MQ=255)
                                                                 gAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCTCCTTTGGCAAAGTGCGCGCCAc                                                                    <  2:2494549/140‑1 (MQ=255)
                                                                 gAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCAc                                                                    <  2:1852115/140‑1 (MQ=255)
                                                                      gctgGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTggg                                                               <  1:856347/140‑1 (MQ=255)
                                                                       atgGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGa                                                              <  2:1915063/139‑1 (MQ=255)
                                                                        tgGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGAt                                                             <  2:2305012/140‑1 (MQ=255)
                                                                           aaaaaCTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATctg                                                          <  1:980857/140‑1 (MQ=255)
                                                                           aaaaaCTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATctg                                                          <  1:2237138/140‑1 (MQ=255)
                                                                               aCTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGa                                                      >  1:1643929/1‑140 (MQ=255)
                                                                                    aaGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGTCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTcc                                                 >  2:1039650/1‑140 (MQ=255)
                                                                                     aGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCg                                                <  2:1108849/140‑1 (MQ=255)
                                                                                      gCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCgg                                               <  2:1243827/140‑1 (MQ=255)
                                                                                         aaaGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGa                                            >  1:2066129/1‑140 (MQ=255)
                                                                                            aaagGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATc                                         <  2:652481/139‑1 (MQ=255)
                                                                                             aagGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATc                                         >  1:107354/1‑139 (MQ=255)
                                                                                             aagGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATc                                         <  2:107354/139‑1 (MQ=255)
                                                                                                 gAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAat                                    <  1:2258965/140‑1 (MQ=255)
                                                                                                  aaaCCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAata                                   <  2:733563/140‑1 (MQ=255)
                                                                                                    aCCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATc                                 >  1:2346997/1‑140 (MQ=255)
                                                                                                    aCCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATc                                 <  1:904108/140‑1 (MQ=255)
                                                                                                    aCCGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATc                                 >  1:1752914/1‑140 (MQ=255)
                                                                                                    aCCACTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCTCCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATc                                 <  1:1803962/140‑1 (MQ=255)
                                                                                                      cGCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAACGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAg                               <  1:2264309/140‑1 (MQ=255)
                                                                                                      agCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAg                               <  2:2046255/139‑1 (MQ=255)
                                                                                                       gCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTTATGGCCTGAAAGTCACCTTTAACAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAgg                              <  1:2443918/140‑1 (MQ=255)
                                                                                                       gCTTTCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTCGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAgg                              <  1:1657073/140‑1 (MQ=255)
                                                                                                          ttCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAGGTGc                           >  2:2189091/1‑140 (MQ=255)
                                                                                                           tCCGATAAAACCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAGGTGCa                          >  1:1902268/1‑140 (MQ=255)
                                                                                                                 aaaaCCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAGGTGCATAAATc                    <  2:1643929/140‑1 (MQ=255)
                                                                                                                 aaaaCCATTGCTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAGGTGCATAAATc                    <  1:2373876/140‑1 (MQ=255)
                                                                                                                           cTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAGGTGCATAAATCCCTGCCGGTg          <  2:1752914/140‑1 (MQ=255)
                                                                                                                           cTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAGGTGCATAAATCCCTGCCGGTg          <  2:2534388/140‑1 (MQ=255)
                                                                                                                           cTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAGGTGCATAAATCCCTGCCGGTg          <  2:903519/140‑1 (MQ=255)
                                                                                                                           cTGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAGGTGCATAAATCCCTGCCGGTg          <  2:216830/140‑1 (MQ=255)
                                                                                                                            tGGCGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAGGTGCATAAATCCCTGCCGGTGc         <  2:2533010/140‑1 (MQ=255)
                                                                                                                               cGAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAGGTGCATAAATCCCTGCCGGTGCAGa      >  1:2222652/1‑140 (MQ=255)
                                                                                                                                gAATACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAGGTGCATAAATCCCTGCCGGTGCAGAc     >  2:811813/1‑140 (MQ=255)
                                                                                                                                 aaTACCATGACTATCAGCGCAAAATCAGCGCCGCCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCACCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAGGTGCATAAATCCCTGCCGGTGCAGACt    <  1:1753311/140‑1 (MQ=255)
                                                                                                                                   tACCATGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAGGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAGGTGCATAAATCCCTGCCGGTGCAGACTGa  <  2:1779296/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                       
CGCGCACGTCACTACTGGAAACCAAAATCACCAGCAATAAACCGCTGGATCTGGTGTGGGACGGCGAACTGCTGGAAAAACTGGAAGCGAAAGAAGGGAAACCGCTTTCCGATAAAACCATTGCTGGCGAATACCCTGACTATCAGCGCAAAATCAGCGCCACCCGTGATGGCCTGAAAGTCACCTTTGGCAAAGTGCGCGCCACCTGGGATCTGCTGACCTCCGGCGAATCGGAATATCAGGTGCATAAATCCCTGCCGGTGCAGACTGA  >  NC_000913/3229303‑3229573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A