Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,231,072	C→A	L729M (CTG→ATG)	ygjK →	glycoside hydrolase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,231,072	0	C	A	100.0%	241.4 / NA	72	L729M (CTG→ATG)	ygjK	glycoside hydrolase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (58/14); total (58/14)

CTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCCTGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATAT  >  NC_000913/3230936‑3231208

cTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGa                                                                                                                                        >  2:64398/1‑140 (MQ=255)

cTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGa                                                                                                                                        >  1:1840453/1‑140 (MQ=255)

  ttGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGaat                                                                                                                                      >  2:1127024/1‑139 (MQ=255)

  ttGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGaat                                                                                                                                      >  2:748372/1‑139 (MQ=255)

  ttGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAg                                                                                                                                      >  1:2056439/1‑140 (MQ=255)

     tCCCGCTGGGAACGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTg                                                                                                                                   <  1:1775448/140‑1 (MQ=255)

          cTGGGAACGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGa                                                                                                                              >  1:552540/1‑140 (MQ=255)

          cTGGGAACGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGCGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCggt                                                                                                                              >  2:1754324/1‑139 (MQ=255)

           tGGGAACGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGAt                                                                                                                             >  2:1580580/1‑140 (MQ=255)

            gggAACGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATa                                                                                                                            <  1:1127024/140‑1 (MQ=255)

             ggAACGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATAc                                                                                                                           <  2:504152/140‑1 (MQ=255)

               aaCGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGt                                                                                                                         >  2:59854/1‑140 (MQ=255)

                        gTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGc                                                                                                                <  1:1037277/140‑1 (MQ=255)

                         ttAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCa                                                                                                               <  2:46211/140‑1 (MQ=255)

                         ttAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCa                                                                                                               <  1:789778/140‑1 (MQ=255)

                         ttAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCa                                                                                                               <  2:598210/140‑1 (MQ=255)

                           aaCCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACg                                                                                                             <  1:64398/140‑1 (MQ=255)

                           aaCCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACg                                                                                                             <  2:1170368/140‑1 (MQ=255)

                             ccAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGcc                                                                                                           <  2:1236398/140‑1 (MQ=255)

                              cAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCa                                                                                                          <  2:1840453/140‑1 (MQ=255)

                              cAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCa                                                                                                          >  1:1286208/1‑140 (MQ=255)

                              cAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCa                                                                                                          <  1:196786/140‑1 (MQ=255)

                              cAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCa                                                                                                          <  2:777808/140‑1 (MQ=255)

                                 tCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAg                                                                                                       >  2:493113/1‑140 (MQ=255)

                                     gCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGtt                                                                                                   >  1:1676283/1‑140 (MQ=255)

                                      cTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑a                                                                                                 >  1:1314432/1‑140 (MQ=255)

                                      cTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑a                                                                                                 >  2:1131130/1‑140 (MQ=255)

                                      cTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑a                                                                                                 >  1:956005/1‑140 (MQ=255)

                                           ggCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AAccgc                                                                                            >  2:1606829/1‑140 (MQ=255)

                                                         cTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTTGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTc                                                                              >  1:1854033/1‑140 (MQ=255)

                                                            gCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAgg                                                                           >  1:745074/1‑140 (MQ=255)

                                                            gCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAgg                                                                           >  2:1064488/1‑140 (MQ=255)

                                                            gCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAgg                                                                           >  2:757151/1‑140 (MQ=255)

                                                            gCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAgg                                                                           >  2:1266071/1‑140 (MQ=255)

                                                            gCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAgg                                                                           >  2:2126673/1‑140 (MQ=255)

                                                            gCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAgg                                                                           >  1:147202/1‑140 (MQ=255)

                                                            gCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAgg                                                                           >  1:1702790/1‑140 (MQ=255)

                                                            gCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGGT‑AACCGCCGATGGACCAATTCAgg                                                                           >  1:1603686/1‑140 (MQ=255)

                                                            gCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGGTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AAACGCCGATGGACCAATTCAgg                                                                           >  2:1426536/1‑140 (MQ=255)

                                                            gCGTGGGCGCGTATGGGTGGATCAGTTCTGGATTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAAtttcgg                                                                           >  2:259547/1‑136 (MQ=255)

                                                            gCGTGGGCGCGTATGGGGGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGGTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAgg                                                                           >  2:250014/1‑140 (MQ=255)

                                                              gTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCACGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGaa                                                                         >  1:1630583/1‑140 (MQ=255)

                                                               tGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGaaa                                                                        >  1:446377/1‑140 (MQ=255)

                                                               tGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGaaa                                                                        >  2:208402/1‑140 (MQ=255)

                                                               tGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGaaa                                                                        >  2:1645535/1‑140 (MQ=255)

                                                               tGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGGTTTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGaaa                                                                        >  2:524105/1‑140 (MQ=255)

                                                                 ggCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAAt                                                                      >  1:1368724/1‑140 (MQ=255)

                                                                 ggCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAAt                                                                      >  1:334503/1‑140 (MQ=255)

                                                                 ggCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAAt                                                                      >  1:1931028/1‑140 (MQ=255)

                                                                 ggCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGGT‑AACCGCCGATGGACCAATTCAGGAAAAt                                                                      >  1:9751/1‑140 (MQ=255)

                                                                 ggCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCCTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAAt                                                                      >  2:1567401/1‑140 (MQ=255)

                                                                   cgcgTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGTCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAAttt                                                                    >  2:385796/1‑139 (MQ=255)

                                                                     ggtgtGGGTGGATGATTTCTGGTTTGTTCAGAAGGGGAGGGAGGGTTGCGTTTGTGGTGGTGTTGAAAGGAAGTGGGGGGATCCTTTCCCCGGGCCCGCAAAGGGGTT‑ACCCGCCGATGGACCAATTCAGGAAAATTACa                                                                  <  2:2056439/136‑1 (MQ=255)

                                                                       agggggTGGATCTGTTTTGGTTTGGTGTGAAAGGGATGGAGCTTTACGTTTATGGTGATGAGGCAATGAAGCGGGCATATCCGTTCTTCCGGCACGCAAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAAc                                                                <  2:1676283/137‑1 (MQ=255)

                                                                               gATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGAc                                                        >  1:1679512/1‑140 (MQ=255)

                                                                                aTCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCTGGAAAATTACAACCCGCTGACa                                                       >  1:1801121/1‑140 (MQ=255)

                                                                                    gTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGgcg                                                   >  2:1371155/1‑140 (MQ=255)

                                                                                     ttCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGGT‑AACCGCCGATGGACCAATTCAGGTAAATTACAACCCGTTGCCAGtcgc                                                  >  2:588872/1‑140 (MQ=255)

                                                                                          gTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGc                                             >  1:1911352/1‑140 (MQ=255)

                                                                                               gTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGTCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGgc                                        >  2:151625/1‑140 (MQ=255)

                                                                                               gTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAggg                                        >  1:1139863/1‑139 (MQ=255)

                                                                                               gTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGgc                                        >  1:750881/1‑140 (MQ=255)

                                                                                               gTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGgc                                        >  2:536661/1‑140 (MQ=255)

                                                                                               gTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGgc                                        >  2:739176/1‑140 (MQ=255)

                                                                                                  tGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCa                                     >  1:613109/1‑140 (MQ=255)

                                                                                                      agggagggCGCTTTACGGTTATCGTAATGATACAATGAGGCGGGCGGATACGTTCTCCCGACCCCCAAAAGGTTA‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCaa                                 <  2:552540/140‑1 (MQ=255)

                                                                                                         gATGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAAtt                              >  1:1166045/1‑140 (MQ=255)

                                                                                                          aTGGAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGGAAATTACAACCCACTGACAGGCGCACAGCAAGGCGCACCAAAttt                             >  1:1645934/1‑140 (MQ=255)

                                                                                                            ggAGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTtct                           >  1:2068491/1‑140 (MQ=255)

                                                                                                              aGCGTTACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTcc                         >  1:127616/1‑140 (MQ=255)

                                                                                                                  ttACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTggg                     >  1:1654198/1‑139 (MQ=255)

                                                                                                                   tACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAg                    >  2:910443/1‑140 (MQ=255)

                                                                                                                   tACGGTTATCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAg                    >  1:369368/1‑140 (MQ=255)

                                                                                                                        ttATGGTGATGATGCCATGAGGCGGGCGGATACTTTCTCCCGCCACGCAAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCcg               <  1:1266071/140‑1 (MQ=255)

                                                                                                                        ttATCGTGATGATGCAATGAAGCGGGCGGATACGTTCTCCGGCCACGCAAAAGGTTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCcg               <  1:628887/140‑1 (MQ=255)

                                                                                                                          ttCGTGATGATACCATAAGGCGGGGGGATCCTTTCTCCCGGCACGCAAAGGGGTA‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCcgcg             <  1:1722613/139‑1 (MQ=255)

                                                                                                                          atggTGATGATGCCATGAAGGGGGCGGATACGTTCTCCGGGCACGCCAAGGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCcgcg             <  2:1635926/137‑1 (MQ=255)

                                                                                                                          atggTGATGATGCAATGAAGCGGGGGAATACTTTCTCCCGCCACG‑CAAAGGGTTAAACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCcgcg             <  2:1166045/137‑1 (MQ=255)

                                                                                                                          atggTGATGATGCAAGGAGGCGGGCGGATACTTTCTCCGGGCACGCAAAGGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCcgcg             <  2:557784/137‑1 (MQ=255)

                                                                                                                          atggTGATGATCCAATGAGGGGGGCGGATACGTCCTCCCGGCCCG‑CAAAGGGTTAAACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCcgcg             <  2:127616/137‑1 (MQ=255)

                                                                                                                          aTCGTGATGATGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCcgcg             >  1:1635926/1‑140 (MQ=255)

                                                                                                                           gcGTGATATTGCCATGAAGCGGGCGAATACGTTCTCCCGCCACGCAAAAGGGTA‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCCgcgc            <  2:1368724/139‑1 (MQ=255)

                                                                                                                            ggTGATGATGCGATGAGGTGGGCGGATAGTTGCTCCCGCCATGCAAAAGGTTT‑ATCCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCa           <  1:1426536/139‑1 (MQ=255)

                                                                                                                            ggTGATAATGTCATGAAGCGGGCGGATACGTTCTCCGGGCCCGCAAAAGGTTA‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCa           <  1:385796/139‑1 (MQ=255)

                                                                                                                            agtaatgatgCAAAGAGGCGGGCGGATACGTTCTCCCGGCAC‑CCAAAGGGTTAAACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCa           <  2:1181837/136‑1 (MQ=255)

                                                                                                                              tgatgaTGCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCACCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCAtt         <  1:1754324/140‑1 (MQ=255)

                                                                                                                               gatgatGCAATGAGGCGGGCGAATACTTTCTTCCGCCACG‑AAAAGGGTTAAACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCAttt        <  2:2068491/140‑1 (MQ=255)

                                                                                                                                   atgCCAGGAAGCGGGCGATTACTTTCTACCCGCACGCCAAGGGTTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGtat    <  2:613109/140‑1 (MQ=255)

                                                                                                                                     gCCATGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTatat  >  1:1007423/1‑140 (MQ=255)

                                                                                                                                     gCCATGAAGCTGGAGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTatat  >  1:1124959/1‑140 (MQ=255)

CTTTGTCCCGCTGGGAACGGCGGCGTTAACCAATCCGGCTTTTGGCGCTGATATCTACTGGCGTGGGCGCGTATGGGTGGATCAGTTCTGGTTTGGTCTGAAAGGGATGGAGCGTTACGGTTATCGTGATGATGCCCTGAAGCTGGCGGATACGTTCTTCCGGCACGCCAAAGGGTT‑AACCGCCGATGGACCAATTCAGGAAAATTACAACCCGCTGACAGGCGCACAGCAAGGCGCACCAAATTTCTCCTGGAGTGCCGCGCATTTGTATAT  >  NC_000913/3230936‑3231208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A