Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,243,481	G→T	R421S (CGT→AGT)	uxaC ←	D‑glucoronate/D‑galacturonate isomerase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,243,481	0	G	T	100.0%	366.5 / NA	105	R421S (CGT→AGT)	uxaC	D‑glucoronate/D‑galacturonate isomerase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (48/57); total (48/57)

Only 100 of 107 total aligned reads displayed.

CGAAGTAGTCACGCGCATTGTTAAAGCAAATATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACGGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAACCACCAGCCGGAACCGAACTGCA  >  NC_000913/3243346‑3243618

cGAAGTAGTCACGCGCATTGTTAAAGCAAATATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGgtg                                                                                                                                       >  1:2134311/1‑140 (MQ=255)

  aaGTAGTCACGCGCATTGTTAAAGCAAATATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGgtgtt                                                                                                                                     >  2:1711142/1‑139 (MQ=255)

  aaGTAGTCACGCGCATTGTTAAAGCAAATATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTa                                                                                                                                     >  1:826647/1‑140 (MQ=255)

     tagtCACGCGCATTGTTAAAGCAAATATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGa                                                                                                                                  <  1:2131824/140‑1 (MQ=255)

          aCGCGCATTGTTAAAGCAAATATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGa                                                                                                                             <  1:1599559/140‑1 (MQ=255)

              gcATTGTTAAAGCAAATATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCt                                                                                                                         >  1:1352692/1‑140 (MQ=255)

              gcATTGTTAAAGCAAATATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCt                                                                                                                         >  1:714042/1‑140 (MQ=255)

               cATTGTTAAAGCAAATATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTa                                                                                                                        >  1:206540/1‑140 (MQ=255)

                     tAAAGCAAATATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTg                                                                                                                  <  2:1007352/140‑1 (MQ=255)

                     tAAAGCAAATATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTg                                                                                                                  <  1:1702042/140‑1 (MQ=255)

                      aaaGCAAATATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTgt                                                                                                                 <  2:495507/140‑1 (MQ=255)

                       aaGCAAATATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCCCCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTgtc                                                                                                                <  2:560703/140‑1 (MQ=255)

                        aGCAAATATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTgtca                                                                                                               <  2:826647/140‑1 (MQ=255)

                         gCAAATATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTgtcag                                                                                                              >  1:818497/1‑140 (MQ=255)

                            aaTATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTgtcagtca                                                                                                           >  2:1737901/1‑140 (MQ=255)

                            aaTATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTgtcagtca                                                                                                           >  2:2038377/1‑140 (MQ=255)

                            aaTATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTgtcagtca                                                                                                           >  2:1830908/1‑140 (MQ=255)

                            aaTATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTgtcagtca                                                                                                           >  2:899056/1‑140 (MQ=255)

                            aaTATTTTTCACCATATCTCCTAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTgtcagtca                                                                                                           >  1:1974978/1‑140 (MQ=255)

                              tatTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGc                                                                                                         >  2:1621997/1‑140 (MQ=255)

                               atTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCa                                                                                                        <  2:813572/140‑1 (MQ=255)

                               atTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCa                                                                                                        <  1:1830908/140‑1 (MQ=255)

                                    tCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCg                                                                                                   >  2:123623/1‑140 (MQ=255)

                                        cATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTgtcagtc                                                                                                            >  2:1598543/1‑127 (MQ=255)

                                        cATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTgtcagtc                                                                                                            <  1:1598543/127‑1 (MQ=255)

                                        cATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACaa                                                                                               <  1:37722/140‑1 (MQ=255)

                                          tctcGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAg                                                                                             <  2:72639/140‑1 (MQ=255)

                                          actcGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAg                                                                                             <  2:395917/139‑1 (MQ=255)

                                           ctcGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGc                                                                                            >  2:1696726/1‑140 (MQ=255)

                                           ctcGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGc                                                                                            >  1:480677/1‑140 (MQ=255)

                                             cGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCgg                                                                                          <  1:1711142/140‑1 (MQ=255)

                                             cGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCgg                                                                                          <  1:731491/140‑1 (MQ=255)

                                                  agcagGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTcag                                                                                     >  2:807817/1‑140 (MQ=255)

                                                    cagGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTcagca                                                                                   >  1:810523/1‑140 (MQ=255)

                                                    cagGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTcagca                                                                                   >  2:1797830/1‑140 (MQ=255)

                                                       gTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGAc                                                                                >  1:1932130/1‑140 (MQ=255)

                                                         tGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCg                                                                              >  1:1102782/1‑140 (MQ=255)

                                                           aTGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAg                                                                            <  2:2039500/140‑1 (MQ=255)

                                                           aTGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAg                                                                            <  1:1718485/140‑1 (MQ=255)

                                                           aTGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAg                                                                            <  1:123623/140‑1 (MQ=255)

                                                            tGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGc                                                                           <  1:807817/140‑1 (MQ=255)

                                                              tCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCtt                                                                         >  2:1656037/1‑139 (MQ=255)

                                                              tCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTg                                                                         >  2:1559838/1‑140 (MQ=255)

                                                               ccgccgGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTgc                                                                        <  2:1087003/140‑1 (MQ=255)

                                                               ccgccgGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTgc                                                                        <  1:1418647/140‑1 (MQ=255)

                                                                cgccgGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTgcg                                                                       <  1:2106104/140‑1 (MQ=255)

                                                                     gTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGt                                                                  <  2:1056371/140‑1 (MQ=255)

                                                                      tGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGtt                                                                 >  2:1976931/1‑140 (MQ=255)

                                                                      cgCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGCATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGtt                                                                 >  2:2120881/2‑140 (MQ=255)

                                                                           cGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTc                                                            <  1:1737901/140‑1 (MQ=255)

                                                                                gCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTg                                                       <  2:1932130/140‑1 (MQ=255)

                                                                                gCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTg                                                       <  1:1138215/140‑1 (MQ=255)

                                                                                gCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTg                                                       <  1:1797830/140‑1 (MQ=255)

                                                                                gCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTg                                                       <  1:2042786/140‑1 (MQ=255)

                                                                                gCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTg                                                       <  1:2038377/140‑1 (MQ=255)

                                                                                gCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTg                                                       <  1:1802255/140‑1 (MQ=255)

                                                                                gCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTg                                                       >  1:495210/1‑140 (MQ=255)

                                                                                gCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTg                                                       >  1:698412/1‑140 (MQ=255)

                                                                                gCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTg                                                       <  1:1250977/140‑1 (MQ=255)

                                                                                 cTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTTCGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGa                                                      >  2:1687392/1‑140 (MQ=255)

                                                                                 cTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTg                                                       <  2:1504075/139‑1 (MQ=255)

                                                                                 cTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTg                                                       >  1:1504075/1‑139 (MQ=255)

                                                                                  ttCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGAc                                                     >  2:2125801/1‑140 (MQ=255)

                                                                                   tCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACg                                                    <  1:541663/140‑1 (MQ=255)

                                                                                    ccACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGt                                                   <  2:1352692/140‑1 (MQ=255)

                                                                                    ccACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGt                                                   <  2:714042/140‑1 (MQ=255)

                                                                                     cACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGtt                                                  <  1:396609/140‑1 (MQ=255)

                                                                                      aCCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTc                                                 <  2:1615651/140‑1 (MQ=255)

                                                                                        ccAGCGACCGATCATCTGGCACAGAATGCGGCGTAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATGCCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCa                                               <  2:1974978/140‑1 (MQ=255)

                                                                                        ccAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCa                                               <  2:1280112/140‑1 (MQ=255)

                                                                                        ccAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCa                                               <  1:1976931/140‑1 (MQ=255)

                                                                                         cAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCAt                                              <  1:1687392/140‑1 (MQ=255)

                                                                                          aGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATa                                             <  1:1617877/140‑1 (MQ=255)

                                                                                          aGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATa                                             <  2:1102782/140‑1 (MQ=255)

                                                                                            cGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATAcc                                           >  1:673962/1‑140 (MQ=255)

                                                                                            cGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATAcc                                           <  2:345792/140‑1 (MQ=255)

                                                                                             gACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCg                                          <  2:544848/140‑1 (MQ=255)

                                                                                                  atcatcTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCttt                                     >  2:389418/1‑140 (MQ=255)

                                                                                                    catcTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCt                                   <  1:2092920/140‑1 (MQ=255)

                                                                                                    catcTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCt                                   <  1:160067/140‑1 (MQ=255)

                                                                                                     atcTGGCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTg                                  <  2:698412/140‑1 (MQ=255)

                                                                                                         ggCACAGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCg                              >  2:244064/1‑140 (MQ=255)

                                                                                                           cacaGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGtt                            <  1:44269/140‑1 (MQ=255)

                                                                                                             caGAATGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTaa                          >  2:166650/1‑140 (MQ=255)

                                                                                                                aaTGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAacc                       >  2:1564354/1‑140 (MQ=255)

                                                                                                                aaTGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAac                        >  2:1583581/1‑139 (MQ=255)

                                                                                                                aaTGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAac                        <  1:1583581/139‑1 (MQ=255)

                                                                                                                 aTGCGGCGGAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAacca                      <  2:2081678/140‑1 (MQ=255)

                                                                                                                    cggcggAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAAccacca                   >  2:158812/1‑140 (MQ=255)

                                                                                                                    cggcggAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAAccacca                   >  2:1666569/1‑140 (MQ=255)

                                                                                                                    cggcggAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAAccacca                   >  2:1973242/1‑140 (MQ=255)

                                                                                                                     ggcggAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAACCACCAg                  >  2:1303155/1‑140 (MQ=255)

                                                                                                                      gcggAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAACCACCAGc                 >  2:706909/1‑140 (MQ=255)

                                                                                                                      gcggAAGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAACCACCAGc                 >  1:1589661/1‑140 (MQ=255)

                                                                                                                          aaGTATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGACAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAACCACCAGCCGGa             >  2:1032746/1‑140 (MQ=255)

                                                                                                                             tATTCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAACCACCAGCCGGAAcc          <  1:1559838/140‑1 (MQ=255)

                                                                                                                                tCGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAACCACCAGCCGGAACCGaa       <  1:244064/140‑1 (MQ=255)

                                                                                                                                 cGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAACCACCAGCCGGAACCGAAc      >  1:2077261/1‑140 (MQ=255)

                                                                                                                                 cGTGACTGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAACCACCAGCCGGAACCGAAc      <  1:759541/140‑1 (MQ=255)

                                                                                                                                    gACTGGTGTATGACAGGAAGCTAC‑GCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAACCACCAGCCGGAACCGAACTGCa  >  2:721953/1‑140 (MQ=255)

CGAAGTAGTCACGCGCATTGTTAAAGCAAATATTTTTCACCATCTCGCCCAGCAGGTTGATGTCCGCCGGTGCTTCGCCCGCTTCCACCCAGCGACCGATCATCTGGCACAGAATGCGGCGGAAGTATTCGTGACGGGTGTATGACAGGAAGCTACGGCTGTCAGTCAGCATACCGACAAAGCGGCTCAGCAGACCGAGCTGCGCCAGTTGGGTCATCTGACGTTCCATACCGTCTTTCTGATCGTTAAACCACCAGCCGGAACCGAACTGCA  >  NC_000913/3243346‑3243618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A