Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,288,425	C→A	A112A (GCC→GCA)	yraI →	putative fimbrial chaperone YraI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,288,425	0	C	A	100.0%	650.3 / NA	185	A112A (GCC→GCA)	yraI	putative fimbrial chaperone YraI
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (110/75); total (110/75)

Only 100 of 191 total aligned reads displayed.

AAAAGCCGTGCCCCATTTATTATAACCCCACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCCATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCACTGGAATTTA  >  NC_000913/3288288‑3288561

aaaaGCCGTGCCCCATTTATTATAACCCCACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAAt                                                                                                                                        >  2:1270636/1‑140 (MQ=255)

     ccGTGCCCCATTTATTATAACCCCACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAg                                                                                                                                   >  2:1689439/1‑140 (MQ=255)

        tGCCCCATTTATTATAACCCCACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCaa                                                                                                                                >  2:193591/1‑140 (MQ=255)

        tGCCCCATTTATTATAACCCCACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCaa                                                                                                                                >  2:337343/1‑140 (MQ=255)

        tGCCCCATTTATTATAACCCCACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCaa                                                                                                                                >  1:1510025/1‑140 (MQ=255)

               tttATTATAACCCCACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATATCCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGaaaaa                                                                                                                         <  1:2019098/140‑1 (MQ=255)

                    tataACCCCACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAg                                                                                                                    <  2:700198/140‑1 (MQ=255)

                     ataACCCCACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGaa                                                                                                                            >  2:589488/1‑131 (MQ=255)

                      taACCCCACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAgat                                                                                                                  <  1:1778684/140‑1 (MQ=255)

                      taACCCCACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAgat                                                                                                                  <  2:1995356/140‑1 (MQ=255)

                       aaCCCCACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAgatg                                                                                                                 >  1:243101/1‑140 (MQ=255)

                         ccccACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAATAAATCAgatgat                                                                                                               >  2:1283103/1‑140 (MQ=255)

                         ccccACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAgatgat                                                                                                               >  2:111807/1‑140 (MQ=255)

                         ccccACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAgatgat                                                                                                               >  2:2003514/1‑140 (MQ=255)

                         ccccACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAgatgat                                                                                                               >  2:2048911/1‑140 (MQ=255)

                         ccccACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAgatgat                                                                                                               >  2:248756/1‑140 (MQ=255)

                         ccccACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAgatgat                                                                                                               >  2:3660/1‑140 (MQ=255)

                         ccccACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAgatgat                                                                                                               >  1:584139/1‑140 (MQ=255)

                         ccccACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAgatgat                                                                                                               >  2:810884/1‑140 (MQ=255)

                         ccccACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAgatgat                                                                                                               >  2:1539199/1‑140 (MQ=255)

                         ccccACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAgatgat                                                                                                               >  2:1044154/1‑140 (MQ=255)

                          cccACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGatgatg                                                                                                              <  1:1630228/140‑1 (MQ=255)

                           ccACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGt                                                                                                             <  1:1590118/140‑1 (MQ=255)

                            cACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGtt                                                                                                            >  1:273259/1‑140 (MQ=255)

                            cACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGtt                                                                                                            <  1:734761/140‑1 (MQ=255)

                            cACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGtt                                                                                                            >  1:1025491/1‑140 (MQ=255)

                            cACCGCTATTTCGTCTTGAGGCTGCCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGtt                                                                                                            >  1:1910747/1‑140 (MQ=255)

                             aCCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTa                                                                                                           >  2:157518/1‑140 (MQ=255)

                             aCCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTa                                                                                                           >  2:1013666/1‑140 (MQ=255)

                             aCCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTa                                                                                                           >  2:885621/1‑140 (MQ=255)

                             aCCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTa                                                                                                           >  2:635210/1‑140 (MQ=255)

                             aCCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTa                                                                                                           >  1:1404393/1‑140 (MQ=255)

                              ccGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTaa                                                                                                          >  1:2140674/1‑140 (MQ=255)

                              ccGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTaa                                                                                                          >  2:1226061/1‑140 (MQ=255)

                               cGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAAt                                                                                                         <  1:1125473/140‑1 (MQ=255)

                                  tATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCt                                                                                                      <  2:1138577/140‑1 (MQ=255)

                                  tATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCt                                                                                                      <  1:1834643/140‑1 (MQ=255)

                                         tCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGt                                                                                               >  1:1166870/1‑140 (MQ=255)

                                          cTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGtt                                                                                              >  1:935192/1‑140 (MQ=255)

                                             gAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCACTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGAc                                                                                           <  1:1491978/140‑1 (MQ=255)

                                                 cTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTg                                                                                       <  1:1598721/140‑1 (MQ=255)

                                                 cTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTg                                                                                       <  2:2140674/140‑1 (MQ=255)

                                                    gCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTa                                                                                    >  2:1002235/1‑140 (MQ=255)

                                                      gATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTAtt                                                                                  <  2:1816178/140‑1 (MQ=255)

                                                             catcaCTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGGATTTaaaata                                                                           <  2:1636777/140‑3 (MQ=255)

                                                              atcaCTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAacac                                                                          >  2:1483435/1‑140 (MQ=255)

                                                              atcaCTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAacac                                                                          <  1:1281419/140‑1 (MQ=255)

                                                              atcaCTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAacac                                                                          >  1:1072744/1‑140 (MQ=255)

                                                              atcaCTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAacac                                                                          <  1:885621/140‑1 (MQ=255)

                                                              atcaCTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAacac                                                                          >  1:396135/1‑140 (MQ=255)

                                                              atcaCTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAacac                                                                          >  1:104420/1‑140 (MQ=255)

                                                                  cTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGAt                                                                      <  1:2028238/140‑1 (MQ=255)

                                                                    gCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCa                                                                    >  1:1984614/1‑140 (MQ=255)

                                                                     cGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCaa                                                                   >  1:517219/1‑140 (MQ=255)

                                                                     cGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCaa                                                                   >  2:1905465/1‑140 (MQ=255)

                                                                      gAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCACTTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCaaa                                                                  >  1:984995/1‑140 (MQ=255)

                                                                                    gCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGTTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGccc                                                    >  2:888924/1‑140 (MQ=255)

                                                                                    gCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGccc                                                    >  2:1966468/1‑140 (MQ=255)

                                                                                    gCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGccc                                                    >  1:850446/1‑140 (MQ=255)

                                                                                     cTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGcccc                                                   >  2:131292/1‑140 (MQ=255)

                                                                                      tGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCg                                                  <  1:1006198/140‑1 (MQ=255)

                                                                                      tGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCg                                                  >  2:1856679/1‑140 (MQ=255)

                                                                                      tGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCg                                                  <  2:517219/140‑1 (MQ=255)

                                                                                      tGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCg                                                  >  1:1094835/1‑140 (MQ=255)

                                                                                      tGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCg                                                  <  1:1284279/140‑1 (MQ=255)

                                                                                       gATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGc                                                 <  2:58162/140‑1 (MQ=255)

                                                                                        aTAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGca                                                <  1:380382/140‑1 (MQ=255)

                                                                                        aTAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGca                                                <  1:745925/140‑1 (MQ=255)

                                                                                               gcctgAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGa                                         >  2:1601017/1‑140 (MQ=255)

                                                                                               gcctgAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGa                                         >  1:671464/1‑140 (MQ=255)

                                                                                               gcctgAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGa                                         <  2:1439540/140‑1 (MQ=255)

                                                                                               gcctgAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGa                                         >  2:961071/1‑140 (MQ=255)

                                                                                                actgAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGaa                                        <  2:989396/139‑1 (MQ=255)

                                                                                                    aaaaTAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGa                                    <  1:1226061/140‑1 (MQ=255)

                                                                                                    aaaaTAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGa                                    <  2:993815/140‑1 (MQ=255)

                                                                                                    aaaaTAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGa                                    <  1:1689439/140‑1 (MQ=255)

                                                                                                    aaaaTAAAGAGTCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGa                                    <  1:1966468/140‑1 (MQ=255)

                                                                                                    aaaaTAAAGAGTCACTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGa                                    <  2:1201790/140‑1 (MQ=255)

                                                                                                              atCGCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACg                          <  2:1159771/139‑1 (MQ=255)

                                                                                                                 gCTGTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGa                                    <  1:636799/127‑1 (MQ=255)

                                                                                                                    gTTCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGt                    <  1:1238894/140‑1 (MQ=255)

                                                                                                                     ttCTACATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTg                   >  1:416009/1‑140 (MQ=255)

                                                                                                                          cATTAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAAt              >  1:603309/1‑140 (MQ=255)

                                                                                                                            ttAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCa            <  2:416009/140‑1 (MQ=255)

                                                                                                                            ttAATGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCa            >  1:1329821/1‑140 (MQ=255)

                                                                                                                              aaTGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCACt          <  1:1515618/140‑1 (MQ=255)

                                                                                                                               aTGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCGCTg         <  2:1591068/140‑1 (MQ=255)

                                                                                                                               aTGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCACTg         >  2:2076410/1‑140 (MQ=255)

                                                                                                                               aTGTTCGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCACTg         >  1:427770/1‑140 (MQ=255)

                                                                                                                                    cGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCACTGGAAtt    >  1:1784325/1‑140 (MQ=255)

                                                                                                                                    cGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCACTGGAAtt    >  1:2121549/1‑140 (MQ=255)

                                                                                                                                    cGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCACTGGAAtt    >  2:1255538/1‑140 (MQ=255)

                                                                                                                                    cGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCACTGGAAtt    >  2:1790829/1‑140 (MQ=255)

                                                                                                                                    cGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCACTGGAAtt    >  1:1664083/1‑140 (MQ=255)

                                                                                                                                    cGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCACTGGAAtt    >  2:306817/1‑140 (MQ=255)

                                                                                                                                    cGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCACTGGAAtt    >  1:314585/1‑140 (MQ=255)

                                                                                                                                    cGTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCACTGGAAtt    >  2:2024441/1‑140 (MQ=255)

                                                                                                                                     gTGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCACTGGAAttt   >  1:1764552/1‑140 (MQ=255)

                                                                                                                                      tGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCACTGGAATTTa  <  1:810884/140‑1 (MQ=255)

                                                                                                                                      tGCAATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCATGGAAATCACTGGAATTTa  <  2:531773/140‑1 (MQ=255)

AAAAGCCGTGCCCCATTTATTATAACCCCACCGCTATTTCGTCTTGAGGCTGGCGATGACTCATCACTGCGAATTATTAAAACAGCTGATAACCTGCCTGAAAATAAAGAGTCGCTGTTCTACATTAATGTTCGTGCCATTCCAGCAAAGAAAAAATCAGATGATGTTAATGCTAACGAGTTGACGCTGGTATTTAAAACACGGATCAAAATGTTTTATCGCCCCGCACACCTGAAGGGACGGGTAAACGATGCGTGGAAATCACTGGAATTTA  >  NC_000913/3288288‑3288561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A