Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,322,484 C→A V8F (GTT→TTT)  secG ← Sec translocon subunit SecG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,322,4840CA100.0% 325.0 / NA 94V8F (GTT→TTT) secGSec translocon subunit SecG
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (42/52);  total (42/52)

GGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAACTACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGAC  >  NC_000913/3322347‑3322616
                                                                                                                                         |                                                                                                                                    
ggTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAaata                                                                                                                                    >  2:305252/1‑140 (MQ=255)
 gTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAaatac                                                                                                                                   >  2:604189/1‑140 (MQ=255)
      gAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTaaaa                                                                                                                              <  1:6649/140‑1 (MQ=255)
      gAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTaaaa                                                                                                                              <  1:956504/140‑1 (MQ=255)
       aaGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAag                                                                                                                             <  1:1155865/140‑1 (MQ=255)
        aGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAaga                                                                                                                            <  1:1765488/140‑1 (MQ=255)
           tACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCt                                                                                                                         <  2:2058178/140‑1 (MQ=255)
           tACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCt                                                                                                                         <  2:1045067/140‑1 (MQ=255)
            aCCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCtt                                                                                                                        <  1:1006298/140‑1 (MQ=255)
            aCCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCtt                                                                                                                        <  1:713609/140‑1 (MQ=255)
            aCCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCtt                                                                                                                        <  1:1294395/140‑1 (MQ=255)
             ccAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCTCAATAAGGAAAAATACTAAAAGAGCTTc                                                                                                                       >  2:2014373/1‑140 (MQ=255)
                gAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTcata                                                                                                                    <  1:604189/140‑1 (MQ=255)
                 aaCCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTcatac                                                                                                                   >  1:1140109/1‑140 (MQ=255)
                 aaCCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTcatac                                                                                                                   >  2:298107/1‑140 (MQ=255)
                     aCTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACGAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATaa                                                                                                               <  2:1669331/140‑1 (MQ=255)
                      cTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAAt                                                                                                              >  1:32053/1‑140 (MQ=255)
                          aaCCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAAc                                                                                                          <  1:2011719/140‑1 (MQ=255)
                           aCCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAAcc                                                                                                         >  1:1100432/1‑140 (MQ=255)
                               aaCAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGtt                                                                                                     <  1:762393/140‑1 (MQ=255)
                               aaCAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGtt                                                                                                     <  2:32053/140‑1 (MQ=255)
                                    cGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTg                                                                                                >  2:440853/1‑140 (MQ=255)
                                     gTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGc                                                                                               >  1:1510331/1‑140 (MQ=255)
                                         cGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAg                                                                                           >  1:708315/1‑140 (MQ=255)
                                          ggAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAATAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGt                                                                                          <  1:1768098/140‑1 (MQ=255)
                                          ggAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGt                                                                                          <  1:2008122/140‑1 (MQ=255)
                                          ggAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGt                                                                                          <  1:856304/140‑1 (MQ=255)
                                            aaGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTg                                                                                        >  2:1171899/1‑140 (MQ=255)
                                               ggcCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCcg                                                                                     <  2:547251/139‑1 (MQ=255)
                                               cgcCTGCTCCGAAGGAGGCTCGCATATCAGCGCATTTAACTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCGCAATAAGGAAAAATACTAAAAGAGCTGCATACATAATCAACCTGTTCCTTGCGGAGTTGCcg                                                                                     <  2:836077/140‑1 (MQ=255)
                                               cgcCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCcg                                                                                     <  1:36535/140‑1 (MQ=255)
                                                 ccTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCcgcg                                                                                   <  1:2014373/140‑1 (MQ=255)
                                                     cTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTAcc                                                                               >  1:1516383/1‑140 (MQ=255)
                                                     cTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTAcc                                                                               <  2:2143080/140‑1 (MQ=255)
                                                      tCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAATAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCa                                                                              <  1:1739242/140‑1 (MQ=255)
                                                      tCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCa                                                                              <  1:1942992/140‑1 (MQ=255)
                                                      tCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCa                                                                              <  2:1626820/140‑1 (MQ=255)
                                                      tCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCa                                                                              <  1:501491/140‑1 (MQ=255)
                                                               ggCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCat                                                                     >  2:270804/1‑139 (MQ=255)
                                                               ggCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCaa                                                                     >  2:1993782/1‑140 (MQ=255)
                                                                gCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAAc                                                                    >  2:513347/1‑140 (MQ=255)
                                                                           aGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCgg                                                         <  1:333241/140‑1 (MQ=255)
                                                                           aGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCgg                                                         <  2:975809/140‑1 (MQ=255)
                                                                            gcgcCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCggg                                                        <  1:639481/140‑1 (MQ=255)
                                                                            gcgcCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCggg                                                        <  1:305252/140‑1 (MQ=255)
                                                                             cgcCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGa                                                       >  1:225560/1‑140 (MQ=255)
                                                                              gcCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGat                                                      >  2:582685/1‑139 (MQ=255)
                                                                              gcCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAg                                                      >  1:1431199/1‑140 (MQ=255)
                                                                              gcCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAg                                                      >  2:1965886/1‑140 (MQ=255)
                                                                              gcCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAg                                                      >  1:1114443/1‑140 (MQ=255)
                                                                                  ttACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGtttt                                                  >  2:688961/1‑140 (MQ=255)
                                                                                    aCCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTa                                                <  2:273685/140‑1 (MQ=255)
                                                                                    aCCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTa                                                <  2:842439/140‑1 (MQ=255)
                                                                                       ttGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATc                                             >  1:2079472/1‑140 (MQ=255)
                                                                                       ttGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATc                                             <  2:1140109/140‑1 (MQ=255)
                                                                                          ctgcAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGATTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGATTTTAATCttt                                          >  1:1464075/1‑140 (MQ=255)
                                                                                                  tGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAATAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGa                                  >  2:603699/1‑140 (MQ=255)
                                                                                                   gATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGaa                                 <  1:1273898/140‑1 (MQ=255)
                                                                                                    aTCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAg                                >  1:796007/1‑140 (MQ=255)
                                                                                                    aTCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAg                                <  2:1279943/140‑1 (MQ=255)
                                                                                                    aTCAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAg                                <  1:298107/140‑1 (MQ=255)
                                                                                                      cAGACCAACAAGGCCAATTGTCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCg                              <  1:2031060/140‑1 (MQ=255)
                                                                                                      cAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCg                              <  2:1510331/140‑1 (MQ=255)
                                                                                                      cAGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCg                              <  1:1230023/140‑1 (MQ=255)
                                                                                                      aaGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCg                              <  2:1114443/139‑1 (MQ=255)
                                                                                                      aaGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCg                              <  2:1100432/139‑1 (MQ=255)
                                                                                                       aGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCgg                             <  1:1993782/140‑1 (MQ=255)
                                                                                                       aGACCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCgg                             >  1:1340555/1‑140 (MQ=255)
                                                                                                         aCCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGgt                           >  1:112555/1‑140 (MQ=255)
                                                                                                         aCCAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGgt                           >  1:336623/1‑140 (MQ=255)
                                                                                                          ccAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGgtg                          >  2:1573213/1‑140 (MQ=255)
                                                                                                          ccAACAAGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGgtg                          >  1:822851/1‑140 (MQ=255)
                                                                                                           caacaaGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGgtgt                         <  2:796007/140‑1 (MQ=255)
                                                                                                           caacaaGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGgtgt                         <  2:1067628/140‑1 (MQ=255)
                                                                                                           caacaaGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGgtgt                         <  1:292706/140‑1 (MQ=255)
                                                                                                           caacaaGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGgtgt                         <  2:150454/140‑1 (MQ=255)
                                                                                                           caacaaGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGgtgt                         <  1:513347/140‑1 (MQ=255)
                                                                                                           aaacaaGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGgtgt                         <  2:112555/139‑1 (MQ=255)
                                                                                                              caaGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGaa                      >  2:846872/1‑140 (MQ=255)
                                                                                                              caaGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGaa                      >  2:1760718/1‑140 (MQ=255)
                                                                                                              caaGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGaa                      >  2:1908551/1‑140 (MQ=255)
                                                                                                              caaGGCCAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGaa                      >  1:1344979/1‑140 (MQ=255)
                                                                                                                   ccAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTa                 >  1:529040/1‑140 (MQ=255)
                                                                                                                   ccAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTa                 >  1:292168/1‑140 (MQ=255)
                                                                                                                   ccAATTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTa                 >  2:1127384/1‑140 (MQ=255)
                                                                                                                      aTTGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAAcc              >  2:983753/1‑140 (MQ=255)
                                                                                                                       ttGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCa             >  2:960882/1‑140 (MQ=255)
                                                                                                                        tGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCaa            <  1:1760718/140‑1 (MQ=255)
                                                                                                                        tGCCACAATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCaa            <  1:960882/140‑1 (MQ=255)
                                                                                                                           cacaATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTACTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGc         >  1:1916894/1‑140 (MQ=255)
                                                                                                                            acaATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCg        >  1:1423346/1‑140 (MQ=255)
                                                                                                                            acaATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCg        >  1:2030950/1‑140 (MQ=255)
                                                                                                                             caATAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGa       >  2:1049051/1‑140 (MQ=255)
                                                                                                                              aaTAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGaa      <  2:1642412/140‑1 (MQ=255)
                                                                                                                              aaTAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGaa      <  1:1127384/140‑1 (MQ=255)
                                                                                                                              aaTAAGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGaa      <  2:336623/140‑1 (MQ=255)
                                                                                                                                  aGGAAAAATACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGAc  >  2:2073612/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                    
GGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAGCGCCTTTACCTTGCTGCAGCATGATCAGACCAACAAGGCCAATTGCCACAATAAGGAAAACTACTAAAAGAGCTTCATACATAATCAACCTGTTCCTTGCGGAGTTGCCGCGTACCAATGCTTCAACCAATAAAGCGGGAGTTTTTAATCTTTCCCACTGAAGCGGGTGTGAATACTAACCAAAGCGAATGAC  >  NC_000913/3322347‑3322616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A