Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,348,103	C→A	A46A (GCC→GCA)	npr →	phosphorelay protein Npr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,348,103	0	C	A	100.0%	397.2 / NA	114	A46A (GCC→GCA)	npr	phosphorelay protein Npr
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (54/60); total (54/60)

Only 100 of 118 total aligned reads displayed.

GACCGTCAAGCAAACTGTTGAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCCAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAA  >  NC_000913/3347968‑3348238

gACCGTCAAGCAAACTGTTGAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACa                                                                                                                                     >  1:1433702/1‑140 (MQ=255)

gACCGTCAAGCAAACTGTTGAAATCACAAACAAGCT‑GGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAg                                                                                                                                    >  1:253157/1‑140 (MQ=255)

 aCCGTCAAGCAAACTGTTGAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAg                                                                                                                                    >  1:579735/1‑140 (MQ=255)

   cGTCAAGCAAACTGTTGAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCg                                                                                                                                  <  1:651742/140‑1 (MQ=255)

      cAAGCAAACTGTTGAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTa                                                                                                                               <  2:1852737/140‑1 (MQ=255)

      cAAGCAAACTGTTGAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTa                                                                                                                               <  1:1252323/140‑1 (MQ=255)

       aaGCAAACTGTTGAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTAt                                                                                                                              >  2:1044516/1‑140 (MQ=255)

            aaCTGTTGAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTgcgc                                                                                                                         <  2:918140/140‑1 (MQ=255)

             aCTGTTGAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCgct                                                                                                                        >  1:2038643/1‑140 (MQ=255)

              cTGTTGAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCgctg                                                                                                                       <  1:101482/140‑1 (MQ=255)

              cTGTTGAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCgctg                                                                                                                       <  2:1238095/140‑1 (MQ=255)

              cTGTTGAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCgctg                                                                                                                       <  2:3306/140‑1 (MQ=255)

               tGTTGAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCgctgc                                                                                                                      <  1:1784478/140‑1 (MQ=255)

               tGTTGAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCgctgc                                                                                                                      <  1:1806286/140‑1 (MQ=255)

                 ttGAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGctgctg                                                                                                                    >  2:1982548/1‑140 (MQ=255)

                 ttGAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGctgctg                                                                                                                    >  1:251644/1‑140 (MQ=255)

                   gAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGAt                                                                                                                  >  2:1163971/1‑140 (MQ=255)

                    aaaTCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATg                                                                                                                 >  1:269601/1‑140 (MQ=255)

                     aaTCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGt                                                                                                                >  1:230570/1‑140 (MQ=255)

                         acaaacaaGTTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGa                                                                                                            >  1:36703/1‑140 (MQ=255)

                         acaaacaaGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGa                                                                                                            >  2:1563600/1‑140 (MQ=255)

                          aaaacaaGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGAt                                                                                                           <  2:251644/139‑1 (MQ=255)

                           aaacaaGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGAtt                                                                                                          <  2:348214/140‑1 (MQ=255)

                                 gCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCa                                                                                                    >  2:1054129/1‑140 (MQ=255)

                                    gggCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAg                                                                                                 <  2:792358/140‑1 (MQ=255)

                                     ggCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAgg                                                                                                >  2:1349870/1‑140 (MQ=255)

                                     ggCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAgg                                                                                                >  1:307073/1‑140 (MQ=255)

                                       catgcatgCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGAc                                                                                              >  2:1941493/1‑140 (MQ=255)

                                        atgcatgcCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACg                                                                                             <  1:1839349/140‑1 (MQ=255)

                                         tgcatgcCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACgg                                                                                            <  1:845195/140‑1 (MQ=255)

                                          gcatgcCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGc                                                                                           <  1:618012/140‑1 (MQ=255)

                                           catgcCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCa                                                                                          >  2:1805984/1‑140 (MQ=255)

                                               cccGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGAtt                                                                                      >  2:354684/1‑140 (MQ=255)

                                                ccGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGAttg                                                                                     >  2:563569/1‑140 (MQ=255)

                                                   gCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGAttgaat                                                                                  >  2:332918/1‑139 (MQ=255)

                                                   gCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGAttgaag                                                                                  <  2:269601/140‑1 (MQ=255)

                                                    ccTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGAttgaagt                                                                                 >  1:1076608/1‑140 (MQ=255)

                                                    ccTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGAttgaagt                                                                                 >  2:245946/1‑140 (MQ=255)

                                                        cAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGAttgaagttgaa                                                                             >  2:655523/1‑140 (MQ=255)

                                                        cAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGAttgaagttgaa                                                                             >  2:1315055/1‑140 (MQ=255)

                                                             aaGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGAc                                                                        <  1:934382/140‑1 (MQ=255)

                                                             aaGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGAc                                                                        <  2:190766/140‑1 (MQ=255)

                                                             aaGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGAc                                                                        <  1:413650/140‑1 (MQ=255)

                                                             aaGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGAc                                                                        <  1:1315055/140‑1 (MQ=255)

                                                             aaGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTCGGATTCTGCCAAAGGACGGCAGATTGAAGTTCAAGCGAc                                                                        <  1:1402778/140‑1 (MQ=255)

                                                              aGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGAcc                                                                       >  2:697178/1‑140 (MQ=255)

                                                              aGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGAcc                                                                       >  1:886666/1‑140 (MQ=255)

                                                              aGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGAcc                                                                       >  1:1857348/1‑140 (MQ=255)

                                                                cTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCgg                                                                     <  2:2038643/140‑1 (MQ=255)

                                                                  gTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTc                                                                   <  1:697178/140‑1 (MQ=255)

                                                                  gTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTc                                                                   <  1:1805984/140‑1 (MQ=255)

                                                                  gTTTGAATTAATGCAGGGTTTTGACGCTAAAGTGCTCTTACGTAATGACCACGGCACCGAGGCTGAAGCAAACTGCGTTCTTGCGCTGCTGATGTTGGATTCTGCCCAAGGACGGCAGATTGCAGTTGAAGCGACCGGTc                                                                   <  2:2019659/140‑1 (MQ=255)

                                                                   tttGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTcc                                                                  >  1:1504217/1‑140 (MQ=255)

                                                                    ttGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCca                                                                 <  2:799780/140‑1 (MQ=255)

                                                                    ttGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCca                                                                 <  1:563569/140‑1 (MQ=255)

                                                                    ttGAAATAATGCAAGGTTTTGGCGCTGAAGTGCTCTTACCTAAAGACCAAAGCTACCAGGCTGAAGCAAACAGAGTTATTGCGCTGCTGATGTTGGAATCTGCCAAAGGGCGGCAGATTGAAGTTGAAGCCACCGGTCca                                                                 <  2:230570/140‑1 (MQ=255)

                                                                     tGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCcac                                                                <  1:245946/140‑1 (MQ=255)

                                                                      gAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCcaca                                                               <  1:793596/140‑1 (MQ=255)

                                                                         ttAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACagga                                                            <  1:1044516/140‑1 (MQ=255)

                                                                          tAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACaggaa                                                           <  2:893435/140‑1 (MQ=255)

                                                                          tAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACaggaa                                                           >  2:413866/1‑140 (MQ=255)

                                                                             tGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACaggaagag                                                        <  1:816543/140‑1 (MQ=255)

                                                                             tGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACaggaagag                                                        >  2:1592526/1‑140 (MQ=255)

                                                                             tGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACaggaagag                                                        >  1:896727/1‑140 (MQ=255)

                                                                             tGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACagga                                                            >  2:1230740/1‑136 (MQ=255)

                                                                             tGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACagga                                                            <  1:1230740/136‑1 (MQ=255)

                                                                              gCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACaggaagagg                                                       <  1:1337064/140‑1 (MQ=255)

                                                                                 gggTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACaggaagaggaag                                                    <  2:579735/140‑1 (MQ=255)

                                                                                  ggTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGc                                                   >  1:82678/1‑140 (MQ=255)

                                                                                  ggTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGc                                                   >  2:1852518/1‑140 (MQ=255)

                                                                                  ggTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGc                                                   >  1:1230462/1‑140 (MQ=255)

                                                                                  ggTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAACAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGc                                                   >  1:1086362/1‑140 (MQ=255)

                                                                                   gTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCa                                                  <  1:1110344/140‑1 (MQ=255)

                                                                                      ttGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTg                                               >  1:1936473/1‑140 (MQ=255)

                                                                                         aCGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGgcc                                            <  1:1054129/140‑1 (MQ=255)

                                                                                          cGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGgccg                                           <  2:1857348/140‑1 (MQ=255)

                                                                                            cTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGATGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGgccgcc                                         >  1:817601/1‑140 (MQ=255)

                                                                                              gAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGt                                       >  2:2071279/1‑140 (MQ=255)

                                                                                              gAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGt                                       >  2:1093451/1‑140 (MQ=255)

                                                                                                aGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTa                                     <  1:655523/140‑1 (MQ=255)

                                                                                                aGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTa                                     <  1:413866/140‑1 (MQ=255)

                                                                                                    ctctTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGc                                 <  2:1076608/140‑1 (MQ=255)

                                                                                                     tctTACGTAATGACGAAGGCACCGAGGCTGAAGCAACCAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAGCCGACCGGTCCACGGGAAGAGGAAGAACTGGCCGCCGTTATCGcc                                <  2:2106814/140‑1 (MQ=255)

                                                                                                     tctTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGcc                                <  2:886666/140‑1 (MQ=255)

                                                                                                     tctTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGcc                                <  2:1996061/140‑1 (MQ=255)

                                                                                                     tctTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGcc                                <  1:1852518/140‑1 (MQ=255)

                                                                                                     tctTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGcc                                <  1:1413854/140‑1 (MQ=255)

                                                                                                     tctTACGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGcc                                <  1:1349870/140‑1 (MQ=255)

                                                                                                         aCGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCctct                            >  2:413396/1‑140 (MQ=255)

                                                                                                         aCGTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCctct                            >  2:1963369/1‑140 (MQ=255)

                                                                                                           gTAATGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCttt                          >  2:1287534/1‑140 (MQ=255)

                                                                                                              aTGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAAt                       >  2:1374162/1‑140 (MQ=255)

                                                                                                               tGACGAAGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAAtt                      >  1:738311/1‑140 (MQ=255)

                                                                                                                     aGGCACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGtt                >  1:2001394/1‑140 (MQ=255)

                                                                                                                        cACCGAGGCTGAAGCAAACAGCGTTATTGCGCTGATGATGATGGATTCTGCTAAAGGACTGCAACTTGAAGTCGACGCGACCGGTCCACAGGAAGAGGAAGCACTGGTTGCCGTTATCGCCCTCCTCAATTGTGGATTtg             >  2:1864953/1‑140 (MQ=255)

                                                                                                                          ccGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTtgat           <  1:1570285/140‑1 (MQ=255)

                                                                                                                          ccGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTtgat           <  2:1930611/140‑1 (MQ=255)

                                                                                                                           cGAGGCTGAAGCAAACGGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTtgatg          <  1:1982548/140‑1 (MQ=255)

                                                                                                                           cGAGGCTGAAGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTtgatg          <  2:1230462/140‑1 (MQ=255)

                                                                                                                                   aaGCAAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTaa  >  1:192500/1‑140 (MQ=255)

GACCGTCAAGCAAACTGTTGAAATCACAAACAAGCTGGGCATGCATGCCCGGCCTGCAATGAAGCTGTTTGAATTAATGCAGGGTTTTGACGCTGAAGTGCTCTTACGTAATGACGAAGGCACCGAGGCTGAAGCCAACAGCGTTATTGCGCTGCTGATGTTGGATTCTGCCAAAGGACGGCAGATTGAAGTTGAAGCGACCGGTCCACAGGAAGAGGAAGCACTGGCCGCCGTTATCGCCCTCTTTAATTCTGGTTTTGATGAAGATTAA  >  NC_000913/3347968‑3348238

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A