Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,372,764	G→T	R271R (CGC→CGA)	nanA ←	N‑acetylneuraminate lyase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,372,764	0	G	T	100.0%	504.8 / NA	145	R271R (CGC→CGA)	nanA	N‑acetylneuraminate lyase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (57/88); total (57/88)

Only 100 of 177 total aligned reads displayed.

GGTACAGATGCGTTTATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTGCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACTTTATTGCATTCAGTTTGCAGTTTCTGCGCGGTCTGGATATCGCCTT  >  NC_000913/3372628‑3372900

ggTACAGATGCGTTTATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcgg                                                                                                                                       >  2:514644/1‑140 (MQ=255)

 gTACAGATGCGTTTATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggc                                                                                                                                      >  2:1240433/1‑140 (MQ=255)

  tACAGATGCGTTTATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggca                                                                                                                                     >  2:268120/1‑140 (MQ=255)

   aCAGATGCGTTTATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggcac                                                                                                                                    >  2:1424036/1‑140 (MQ=255)

    aaGATGCGTTTATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCC‑TCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggcacag                                                                                                                                  <  2:547896/139‑1 (MQ=255)

       aTGCGTTTATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggcacagcg                                                                                                                                >  1:1857297/1‑140 (MQ=255)

       aTGCGTTTATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggcacagcg                                                                                                                                >  1:1824648/1‑140 (MQ=255)

          cGTTTATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggcacagcggca                                                                                                                             >  1:375240/1‑140 (MQ=255)

          cGTTTATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggcacagcggca                                                                                                                             >  2:1363021/1‑140 (MQ=255)

           gTTTATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggcacagcggcac                                                                                                                            >  2:309778/1‑140 (MQ=255)

            tttATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggcacagcggcaca                                                                                                                           >  1:1552375/1‑140 (MQ=255)

            tttATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggcacagcggcaca                                                                                                                           >  1:1912637/1‑140 (MQ=255)

            tttATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggcacagcggcaca                                                                                                                           >  1:927753/1‑140 (MQ=255)

            tttATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggcacagcggcaca                                                                                                                           >  2:1083407/1‑140 (MQ=255)

            tttATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggcacagcggcaca                                                                                                                           >  2:112858/1‑140 (MQ=255)

            tttATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggcacagcggcaca                                                                                                                           >  2:1452252/1‑140 (MQ=255)

            tttATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggcacagcggcaca                                                                                                                           >  2:2011148/1‑140 (MQ=255)

            tttATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggcacagcggcaca                                                                                                                           >  2:404836/1‑140 (MQ=255)

            tttATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTtcggcacagcggcaca                                                                                                                           >  2:905922/1‑140 (MQ=255)

                 ttCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAAc                                                                                                                      <  1:55129/140‑1 (MQ=255)

                   ccccTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGa                                                                                                                    <  1:1367587/140‑1 (MQ=255)

                   ccccTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGa                                                                                                                    <  2:975201/140‑1 (MQ=255)

                    cccTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGAc                                                                                                                   <  1:1083407/140‑1 (MQ=255)

                    cccTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGAc                                                                                                                   <  1:514644/140‑1 (MQ=255)

                      cTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACAt                                                                                                                 <  2:1022162/140‑1 (MQ=255)

                      cTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACAt                                                                                                                 <  2:1958911/140‑1 (MQ=255)

                      cTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACAt                                                                                                                 <  2:122328/140‑1 (MQ=255)

                      cTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACAt                                                                                                                 <  2:1089432/140‑1 (MQ=255)

                      cTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACAt                                                                                                                 <  2:209722/140‑1 (MQ=255)

                      cTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACAt                                                                                                                 <  1:78280/140‑1 (MQ=255)

                      cTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACAt                                                                                                                 <  1:653480/140‑1 (MQ=255)

                      cTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACAt                                                                                                                 <  1:1078805/140‑1 (MQ=255)

                      cTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACAt                                                                                                                 <  1:1424036/140‑1 (MQ=255)

                           ccGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCata                                                                                                            <  2:477379/140‑1 (MQ=255)

                              gTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATaa                                                                                                         >  2:2079023/1‑140 (MQ=255)

                                  gggCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATgga                                                                                                     <  1:1950582/140‑1 (MQ=255)

                                   ggCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATggag                                                                                                    >  1:1847118/1‑140 (MQ=255)

                                     cgagcgagGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTTATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATggagga                                                                                                  >  1:744308/1‑140 (MQ=255)

                                     cgagcgagGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGAc                                                                                                                   <  2:1315276/123‑1 (MQ=255)

                                     cgagcgagGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGAc                                                                                                                   >  1:1315276/1‑123 (MQ=255)

                                     cgagcgagGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATggagga                                                                                                  >  1:1651019/1‑140 (MQ=255)

                                     cgagcgagGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATggagga                                                                                                  >  1:1511464/1‑140 (MQ=255)

                                     cgagcgagGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATggagga                                                                                                  >  2:859560/1‑140 (MQ=255)

                                       agcgagGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACa                                                                                                >  2:42257/1‑140 (MQ=255)

                                       agcgagGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACa                                                                                                >  2:1483301/1‑140 (MQ=255)

                                        gcgagGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACat                                                                                               >  2:1780377/1‑139 (MQ=255)

                                         cgagGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGt                                                                                              >  2:622082/1‑140 (MQ=255)

                                             gggAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTc                                                                                          >  1:999556/1‑140 (MQ=255)

                                              ggAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCa                                                                                         <  2:558253/140‑1 (MQ=255)

                                                aaaCAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAgg                                                                                       <  1:438429/140‑1 (MQ=255)

                                                aaaCAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAgg                                                                                       <  2:1625359/140‑1 (MQ=255)

                                                aaaCAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTAGCAGATATTTTTTATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAgg                                                                                       <  2:744308/140‑1 (MQ=255)

                                                   caacTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCcg                                                                                    <  1:859560/140‑1 (MQ=255)

                                                   caacTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCcg                                                                                    <  1:639849/140‑1 (MQ=255)

                                                   caacTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCcg                                                                                    <  1:2011148/140‑1 (MQ=255)

                                                      cTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCgg                                                                                 >  1:1023940/1‑140 (MQ=255)

                                                      cTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCgg                                                                                 >  2:1104911/1‑140 (MQ=255)

                                                      cTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCgg                                                                                 >  1:1862574/1‑140 (MQ=255)

                                                      cTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCgg                                                                                 >  1:2029808/1‑140 (MQ=255)

                                                      cTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCgg                                                                                 >  1:320383/1‑140 (MQ=255)

                                                       tCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGa                                                                                >  2:139506/1‑140 (MQ=255)

                                                             gcgcTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGc                                                                          <  2:1552375/140‑1 (MQ=255)

                                                                  ctTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTTCCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGtt                                                                     <  1:1168741/140‑1 (MQ=255)

                                                                       aTCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGAt                                                                <  1:170274/140‑1 (MQ=255)

                                                                       aTCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGAt                                                                <  1:1780377/140‑1 (MQ=255)

                                                                       aTCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGAt                                                                <  1:1428407/140‑1 (MQ=255)

                                                                         cAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCa                                                              <  1:309778/140‑1 (MQ=255)

                                                                           aCTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGt                                                            >  1:515549/1‑140 (MQ=255)

                                                                           aCTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGt                                                            >  2:1050121/1‑140 (MQ=255)

                                                                           aCTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAAGCCGCGGAATACGCCCGTTTTGATCAGt                                                            <  2:362839/140‑1 (MQ=255)

                                                                             tgctgGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTaa                                                          >  2:1959478/1‑140 (MQ=255)

                                                                               ctgGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAAt                                                        >  2:1851466/1‑140 (MQ=255)

                                                                               ctgGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAAt                                                        >  1:1344396/1‑140 (MQ=255)

                                                                                tgGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATc                                                       >  2:1712761/1‑140 (MQ=255)

                                                                                 gggCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTg                                                                  >  2:531901/1‑128 (MQ=255)

                                                                                  ggCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCaa                                                     <  1:247525/140‑1 (MQ=255)

                                                                                  ggCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCaa                                                     >  1:2027292/1‑140 (MQ=255)

                                                                                  ggCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCaa                                                     <  2:1803197/140‑1 (MQ=255)

                                                                                   gCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAAt                                                    <  1:931711/140‑1 (MQ=255)

                                                                                   gCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAAt                                                    <  1:1104911/140‑1 (MQ=255)

                                                                                    ccAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAAtt                                                   >  2:806468/1‑139 (MQ=255)

                                                                                    ccAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAAta                                                   >  2:3196/1‑139 (MQ=255)

                                                                                       gcgcCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACt                                                >  2:80705/1‑140 (MQ=255)

                                                                                       gcgcCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACt                                                >  2:650554/1‑140 (MQ=255)

                                                                                       gcgcCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACt                                                >  1:474788/1‑140 (MQ=255)

                                                                                        cgcCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACtt                                               >  1:319484/1‑140 (MQ=255)

                                                                                             tCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGt                                                            <  2:1966404/122‑1 (MQ=255)

                                                                                             tCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGt                                                            >  1:1966404/1‑122 (MQ=255)

                                                                                                    tGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACTTTATTGCATTCAg                                   >  2:1368354/1‑140 (MQ=255)

                                                                                                           tatTTTTCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACTTTATTGCATTCAGTTTGCAg                            >  1:1147087/1‑140 (MQ=255)

                                                                                                                ttCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACTTTATTGCATTCAGTTTGCAGTTTCt                       >  1:1720303/1‑140 (MQ=255)

                                                                                                                ttCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACTTTATTGCATTCAGTTTGCAGTTTCt                       >  1:1755563/1‑140 (MQ=255)

                                                                                                                ttCATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACTTTATTGCATTCAGTTTGCAGTTTCt                       >  2:2046497/1‑140 (MQ=255)

                                                                                                                  cATCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACTTTATTGCATTCAGTTTGCAGTTTCTgc                     <  1:1452252/140‑1 (MQ=255)

                                                                                                                   aTCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACTTTATTGCATTCAGTTTGCAGTTTCTgcg                    <  2:621877/140‑1 (MQ=255)

                                                                                                                   aTCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACTTTATTGCATTCAGTTTGCAGTTTCTgcg                    <  1:1959478/140‑1 (MQ=255)

                                                                                                                   aTCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACTTTATTGCATTCAGTTTGCAGTTTCTgcg                    <  2:1860765/140‑1 (MQ=255)

                                                                                                                   aTCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACTTTATTGCATTCAGTTTGCAGTTTCTgcg                    <  1:1462500/140‑1 (MQ=255)

                                                                                                                   aTCTACCGGTCCAAACGGTTTTCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACTTTATTGCATTCAGTTTGCAGTTTCTgcg                    <  1:1368354/140‑1 (MQ=255)

                                                                                                                                     ttttCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACTTTATTGCATTCAGTTTGCAGTTTCTGCGCGGTCTGGATATCGCctt  <  2:1579920/140‑1 (MQ=255)

GGTACAGATGCGTTTATTTCCCCTCACCCGGTAGGGGCGAGCGAGGGGAAACAACTCACCCGCGCTCTTGCATCAACTGCTGGGCCAGCGCCTTCAGTTCTGGCAGATATTTTTCATCTACCGGTCCAAACGGTTTGCGGCACAGCGGCACAGAAACGACATCCATATAATGGAGGACAGTTTTCAGGCCGCGGAATACGCCCGTTTTGATCAGTAAATCAATGACTTTATTGCATTCAGTTTGCAGTTTCTGCGCGGTCTGGATATCGCCTT  >  NC_000913/3372628‑3372900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A