Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,384,473	G→T	intergenic (‑205/‑230)	mdh ← / → argR	malate dehydrogenase/DNA‑binding transcriptional dual regulator ArgR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,384,473	0	G	T	100.0%	570.8 / NA	164	intergenic (‑205/‑230)	mdh/argR	malate dehydrogenase/DNA‑binding transcriptional dual regulator ArgR
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (96/68); total (96/68)

Only 100 of 172 total aligned reads displayed.

ATTGCCGTTTACAATGACCACATCTCAAGAATGTGTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTGGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGATAAAATCCCGCTCTTTCATA  >  NC_000913/3384336‑3384609

  tGCCGTTTACAATGACCACATCTCAAGAATGTGTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGa                                                                                                                                      <  1:1868805/140‑1 (MQ=255)

  tGCCGTTTACAATGACCACATCTCAAGAATGTGTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGa                                                                                                                                      >  1:454801/1‑140 (MQ=255)

    ccGTTTACAATGACCACATCTCAAGAATGTGTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACa                                                                                                                                    <  1:1097683/140‑1 (MQ=255)

    ccGTTTACAATGACCACATCTCAAGAATGTGTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACa                                                                                                                                    <  1:1189394/140‑1 (MQ=255)

    ccGTTTACAATGACCACATCTCAAGAATGTGTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACa                                                                                                                                    <  1:1271374/140‑1 (MQ=255)

    ccGTTTACAATGACCACATCTCAAGAATGTGTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACa                                                                                                                                    <  2:728282/140‑1 (MQ=255)

    ccGTTTACAATGACCACATCTCAAGAATGTGTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACa                                                                                                                                    <  1:950005/140‑1 (MQ=255)

    ccGTTTACAATGACCACATCTCAAGAATGTGTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACa                                                                                                                                    <  2:1150304/140‑1 (MQ=255)

     cGTTTACAATGACCACATCTCAAGAATGTGTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACaa                                                                                                                                   <  1:1027504/140‑1 (MQ=255)

      gTTTACAATGACCACATCTCAAGAATGTGTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAat                                                                                                                                  <  1:715245/140‑1 (MQ=255)

                  cacaTCTCAAGAATGTGTAGCCACGCAATTGTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGATAATATACCCTACCGt                                                                                                                      >  2:843089/1‑140 (MQ=255)

                          aaGAATGTGTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCATCCaa                                                                                                              >  2:739218/1‑140 (MQ=255)

                          aaGAATGTGTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCaa                                                                                                              >  1:891544/1‑140 (MQ=255)

                           aGAATGTGTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCaaa                                                                                                             <  2:391608/140‑1 (MQ=255)

                             aaTGTGTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAaac                                                                                                           <  2:951671/140‑1 (MQ=255)

                               tgtgTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAaacaa                                                                                                         >  2:474588/1‑140 (MQ=255)

                               tgtgTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAaacaa                                                                                                         >  1:313387/1‑140 (MQ=255)

                               tgtgTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAaacaa                                                                                                         >  2:981100/1‑140 (MQ=255)

                                gtgtAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAaacaac                                                                                                        <  2:2127316/140‑1 (MQ=255)

                                 tgtAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAacaaca                                                                                                       >  2:1858935/1‑140 (MQ=255)

                                 tgtAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAacaaca                                                                                                       >  1:310823/1‑140 (MQ=255)

                                 tgtAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAacaaca                                                                                                       >  1:1408/1‑140 (MQ=255)

                                 tgtAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAacaaca                                                                                                       >  2:849936/1‑140 (MQ=255)

                                   tAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATc                                                                                                     <  1:2106795/140‑1 (MQ=255)

                                   tAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATc                                                                                                     >  1:240684/1‑140 (MQ=255)

                                   tAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATc                                                                                                     <  2:2144378/140‑1 (MQ=255)

                                    aGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCa                                                                                                    >  1:391471/1‑140 (MQ=255)

                                      tCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAAt                                                                                                  <  2:2140986/140‑1 (MQ=255)

                                        aCGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAAttt                                                                                                >  2:1046982/1‑140 (MQ=255)

                                        aCGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAAttt                                                                                                >  2:77189/1‑140 (MQ=255)

                                        aCGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAAttt                                                                                                >  2:1075650/1‑140 (MQ=255)

                                         cGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTg                                                                                               >  2:1232377/1‑140 (MQ=255)

                                           cAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGTAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGAt                                                                                             >  2:63300/1‑140 (MQ=255)

                                           cAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGAt                                                                                             >  1:1625238/1‑140 (MQ=255)

                                           cAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGAt                                                                                             >  1:1682523/1‑140 (MQ=255)

                                           cAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGAt                                                                                             >  2:1513375/1‑140 (MQ=255)

                                           cAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGAt                                                                                             <  1:1305440/140‑1 (MQ=255)

                                           cAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGAt                                                                                             <  1:875098/140‑1 (MQ=255)

                                                ttAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACaa                                                                                        <  2:1989652/140‑1 (MQ=255)

                                                ttAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACaa                                                                                        <  2:1682523/140‑1 (MQ=255)

                                                    cGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACaattaa                                                                                    >  1:1218647/1‑140 (MQ=255)

                                                        tATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTa                                                                                >  1:208127/1‑140 (MQ=255)

                                                        tATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTa                                                                                >  2:1613779/1‑140 (MQ=255)

                                                        tATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTa                                                                                >  1:1706610/1‑140 (MQ=255)

                                                        tATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTa                                                                                <  1:171304/140‑1 (MQ=255)

                                                                tAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAg                                                                        <  2:228614/140‑1 (MQ=255)

                                                                 aaTTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGc                                                                       >  1:1687196/1‑140 (MQ=255)

                                                                 aaTTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGCGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGc                                                                       >  2:1832534/1‑140 (MQ=255)

                                                                       cGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAAtt                                                                 >  2:598728/1‑140 (MQ=255)

                                                                          aaTCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGc                                                              <  2:1625238/140‑1 (MQ=255)

                                                                           aTCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCa                                                             >  2:1430644/1‑140 (MQ=255)

                                                                           aTCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCa                                                             >  2:1657683/1‑140 (MQ=255)

                                                                                gAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCg                                                        >  2:284926/1‑140 (MQ=255)

                                                                                  aCCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTg                                                      <  2:208127/140‑1 (MQ=255)

                                                                                   ccTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGa                                                     <  1:1995970/140‑1 (MQ=255)

                                                                                     tAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACg                                                   <  1:167403/140‑1 (MQ=255)

                                                                                      aaCTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATACCAAGAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGc                                                  >  2:1429746/1‑140 (MQ=255)

                                                                                       aCTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCGGTGACGCa                                                 <  2:313387/140‑1 (MQ=255)

                                                                                       aCTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCa                                                 >  1:390662/1‑140 (MQ=255)

                                                                                           aCGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCa                                             >  2:1795380/1‑140 (MQ=255)

                                                                                           aCGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCa                                             <  2:1930529/140‑1 (MQ=255)

                                                                                           aCGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCa                                             <  1:549772/140‑1 (MQ=255)

                                                                                           aCGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCa                                             <  1:77189/140‑1 (MQ=255)

                                                                                            cGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCAt                                            >  2:55560/1‑140 (MQ=255)

                                                                                            cGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCAt                                            >  1:1579204/1‑140 (MQ=255)

                                                                                              tAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGt                                          >  2:1112780/1‑140 (MQ=255)

                                                                                                 ttAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGAAGGCATGtttt                                       >  2:1311160/1‑139 (MQ=255)

                                                                                                    aCAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCa                                    <  1:1513375/140‑1 (MQ=255)

                                                                                                      aGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAAt                                  >  1:1974498/1‑140 (MQ=255)

                                                                                                      aGTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAAt                                  >  1:1477638/1‑140 (MQ=255)

                                                                                                       gTCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATa                                 >  2:827593/1‑140 (MQ=255)

                                                                                                        tCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATaa                                <  1:2053747/140‑1 (MQ=255)

                                                                                                        tCGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATaa                                <  2:310823/140‑1 (MQ=255)

                                                                                                         cGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAAc                               >  1:1326863/1‑140 (MQ=255)

                                                                                                         cGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAAc                               >  1:224330/1‑140 (MQ=255)

                                                                                                         cGCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAAc                               >  1:1349750/1‑140 (MQ=255)

                                                                                                          gCTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACg                              <  2:335575/140‑1 (MQ=255)

                                                                                                           cTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGa                             >  2:122103/1‑140 (MQ=255)

                                                                                                           cTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGa                             >  1:620803/1‑140 (MQ=255)

                                                                                                           cTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGa                             >  1:1381348/1‑140 (MQ=255)

                                                                                                           cTTATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGa                             >  1:930489/1‑140 (MQ=255)

                                                                                                             tATGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGaaa                           >  1:1180175/1‑140 (MQ=255)

                                                                                                               tGCATTAGCGCAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAAtt                         >  1:839721/1‑140 (MQ=255)

                                                                                                                  aTTAGCGAAACATTCCAAAAGGTTGTGACAATATCCCCTACCGTTAAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGa                      <  1:2014755/140‑1 (MQ=255)

                                                                                                                      gcgcAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGATaaa                  >  2:1267475/1‑140 (MQ=255)

                                                                                                                      gcgcAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGATaaa                  >  2:37174/1‑140 (MQ=255)

                                                                                                                      gcgcAACATTCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGATaaa                  >  2:1521779/1‑140 (MQ=255)

                                                                                                                         cAACATTCCAACAGGGTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGATAAAATc               >  1:1955640/1‑140 (MQ=255)

                                                                                                                            cATTCCAACAGGCTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGATAAAATccct            >  2:36861/1‑139 (MQ=255)

                                                                                                                            aaTTCCAACAGGTTGTGACAATATCCCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGATAAAATCCCg            <  1:761287/139‑1 (MQ=255)

                                                                                                                              ttCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGATAAAATCCCGct          <  1:1827600/140‑1 (MQ=255)

                                                                                                                               tCCAACAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAACCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGATAAAATCCCGctc         <  2:1673286/140‑1 (MQ=255)

                                                                                                                                   aCAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGATAAAATCCCGCTCTTTc     <  2:208786/140‑1 (MQ=255)

                                                                                                                                    cAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGATAAAATCCCGCTCTTTCa    <  2:1477638/140‑1 (MQ=255)

                                                                                                                                    cAGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGATAAAATCCCGCTCTTTCa    <  1:598728/140‑1 (MQ=255)

                                                                                                                                     aGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGATAAAATCCCGCTCTTTCAt   <  2:240684/140‑1 (MQ=255)

                                                                                                                                     aGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGATAAAATCCCGCTCTTTCAt   <  1:179239/140‑1 (MQ=255)

                                                                                                                                     aGGTTGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGATAAAATCCCGCTCTTTCAt   <  1:1075650/140‑1 (MQ=255)

                                                                                                                                      ggttgtGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGATAAAATCCCGCTCTTTCATa  >  2:294446/1‑140 (MQ=255)

                                                                                                                                      ggttgtGACAATATACCCTACCGCTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTAATAAGATCCCGCTCTTTcctt  >  2:1704149/1‑137 (MQ=255)

ATTGCCGTTTACAATGACCACATCTCAAGAATGTGTAGTCACGCAAGTTTAGCGTTTATGCATTTAATTGCCGTAATCAGGAACCTAACTTACGTAATTAACAGTCGCTTATGCATTAGCGCAACATTCCAACAGGTGGTGACAATATACCCTACCGTTCAGCCAAAACAACATCAATTTGATAACAATTAATTTACTTTTAAGCAGAATTTGCATGCCGTGACGCAGGCATGTTTCTCAATAACGAAATTTGATAAAATCCCGCTCTTTCATA  >  NC_000913/3384336‑3384609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A