Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F48 I1 R1
|
76 |
74.1 |
2532288 |
99.0% |
2506965 |
139.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,387,360 |
G→T |
P277T (CCG→ACG) |
aaeB ← |
aromatic carboxylic acid efflux pump subunit AaeB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,387,360 | 0 | G | T | 98.8%
| 292.5
/ NA
| 86 | P277T (CCG→ACG) | aaeB | aromatic carboxylic acid efflux pump subunit AaeB |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (40/45); minor base A (0/1); total (40/46) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCGCTTGAGAAGCTGATAACGCGTTGCCGCCGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGGCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGCGTATTGATCGCTTTTAAACGTCGATTG > NC_000913/3387223‑3387487
|
gcgcTTGAGAAGCTGATAACGCGTTGCCGCCGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCg > 1:1033110/1‑140 (MQ=255)
gCTGATAACGCGTTGCCGCCGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAAt > 2:865842/1‑140 (MQ=255)
cTGATAACGCGTTGCCGCCGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAAtt > 2:469691/1‑140 (MQ=255)
tGATAACGCGTTGCCGCCGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTc > 2:576779/1‑140 (MQ=255)
tGATAACGCGTTGCCGCCGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTc > 1:713971/1‑140 (MQ=255)
gATAACGCGTTGCCGCCGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTcg < 2:1033110/140‑1 (MQ=255)
gATAACGCGTTGCCGCCGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTcg > 1:1188650/1‑140 (MQ=255)
tAACGCGTTGCCGCCGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTcgcg < 1:1200229/140‑1 (MQ=255)
tAACGCGTTGCCGCCGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTcgcg < 1:462786/140‑1 (MQ=255)
tAACGCGTTGCCGCCGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTACCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTcgcg < 1:792038/140‑1 (MQ=255)
aCGCGTTGCCGCCGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTGCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGa < 2:1028388/140‑1 (MQ=255)
aCGCGTTGCCGCCGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGa < 2:949946/140‑1 (MQ=255)
aCGCGTTGCCGCCGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGa < 2:747254/140‑1 (MQ=255)
tGCCGCCGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTAt < 1:865842/140‑1 (MQ=255)
gccgccGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATc > 2:1113939/1‑140 (MQ=255)
gccgccGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATc > 2:951300/1‑140 (MQ=255)
ccgccgCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCa < 1:1142798/140‑1 (MQ=255)
gccgcGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGt < 1:469691/140‑1 (MQ=255)
gCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCg < 2:1079599/140‑1 (MQ=255)
gCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCg < 1:625784/140‑1 (MQ=255)
gCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCg < 2:713971/140‑1 (MQ=255)
acTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCg < 1:369952/139‑1 (MQ=255)
tataAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCggg < 2:1188650/140‑1 (MQ=255)
aaaTGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGgcgc < 1:219587/140‑1 (MQ=255)
aaaTGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGgcgc < 1:324457/140‑1 (MQ=255)
aaaTGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGgcgc < 2:1024901/140‑1 (MQ=255)
ggTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTAt > 1:790461/1‑140 (MQ=255)
gTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTAtt < 1:452780/140‑1 (MQ=255)
gTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTAtt > 2:180419/1‑140 (MQ=255)
tGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTAttt > 1:557023/1‑139 (MQ=255)
tGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTc > 2:710271/1‑140 (MQ=255)
tGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTc > 2:854552/1‑140 (MQ=255)
tGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTc > 1:211872/1‑140 (MQ=255)
tGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTc > 2:286826/1‑140 (MQ=255)
tGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTc > 2:347355/1‑140 (MQ=255)
tGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTc > 2:425181/1‑140 (MQ=255)
tGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTc > 1:745493/1‑140 (MQ=255)
tGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTc > 2:480917/1‑140 (MQ=255)
tGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAACTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTc > 1:860961/1‑140 (MQ=255)
aCAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTg < 2:525076/140‑1 (MQ=255)
aCAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTg > 1:14822/1‑140 (MQ=255)
cAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGa > 2:1127145/1‑140 (MQ=255)
aGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGaa < 2:614908/140‑1 (MQ=255)
ggCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAat < 2:790461/140‑1 (MQ=255)
ttCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAataagat > 2:799223/1‑140 (MQ=255)
cccGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTG‑TCAATTCCGGGCGCGTATTCTGAataagataag < 1:931561/140‑1 (MQ=255)
ccGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAataagataag < 1:710271/140‑1 (MQ=255)
ccccGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCg < 2:321260/140‑1 (MQ=255)
ccccGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCg < 2:146577/140‑1 (MQ=255)
ccGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCa < 2:992473/140‑1 (MQ=255)
ccGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGGCCTGCGTGGTTTCTACCGACGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCa < 2:610246/140‑1 (MQ=255)
ggTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAgg < 1:347355/140‑1 (MQ=255)
gTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGa < 1:732099/140‑1 (MQ=255)
tCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGAt > 1:1197261/1‑140 (MQ=255)
ccAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGAtt < 1:180419/140‑1 (MQ=255)
tAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAAtc < 2:211872/140‑1 (MQ=255)
aaCTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAAtca < 2:1197261/140‑1 (MQ=255)
aaCTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAAtca > 2:696544/1‑140 (MQ=255)
aaCTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAAtca > 1:812152/1‑140 (MQ=255)
aaCTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGGTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAAtca > 2:1140120/1‑140 (MQ=255)
cGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAAtcagcgtcag < 1:480917/140‑1 (MQ=255)
cAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAAtcagcgtcagcg < 2:635971/140‑1 (MQ=255)
cAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAAtcagcgtcagcg > 2:347192/1‑140 (MQ=255)
aGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGa < 2:14822/140‑1 (MQ=255)
ggCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGAt < 1:1127145/140‑1 (MQ=255)
gCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATa < 1:234552/140‑1 (MQ=255)
gCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATa < 1:576779/140‑1 (MQ=255)
gCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATa > 2:128926/1‑140 (MQ=255)
cGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAg > 2:782700/1‑140 (MQ=255)
tttGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATATCg > 2:6183/1‑140 (MQ=255)
tttGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGct > 2:976274/1‑139 (MQ=255)
tGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGCGTa > 1:1122694/1‑140 (MQ=255)
tgctTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCTGGCTCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGCGTATTGAt > 2:633571/1‑140 (MQ=255)
tgctTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGCGTATTGAt < 2:299798/140‑1 (MQ=255)
tgctTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGCGTATTGAt > 2:1004684/1‑140 (MQ=255)
gctTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGCGTATTGATc < 1:696544/140‑1 (MQ=255)
gctTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGCGTATTGATc < 1:951300/140‑1 (MQ=255)
ctTGTGGACGTCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGCGTATTGATCg > 1:284044/1‑140 (MQ=255)
tCCTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGCGTATTGATCGCTTTTAAACg > 1:273741/1‑140 (MQ=255)
ccTGCGCGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGCGTATTGATCGCTTTTAAACGt > 2:205032/1‑140 (MQ=255)
gcgcGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGCGTATTGATCGCTTTTAAACGTCGa > 1:510447/1‑140 (MQ=255)
gcgcGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGCGTATTGATCGCTTTTAAACGTCGa < 2:860961/140‑1 (MQ=255)
gcgcGGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGCGTATTGATCGCTTTTAAACGTCGa < 1:128926/140‑1 (MQ=255)
gcgGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGCGTATTGATCGCTTTTAAACGTCGAtt < 1:633571/140‑1 (MQ=255)
gcgGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGCGTATTGATCGCTTTTAAACGTCGAtt < 2:284044/140‑1 (MQ=255)
cgGTTTCTACCGTCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGCGTATTGATCGCTTTTAAACGTCGATTg > 1:852833/1‑140 (MQ=255)
|
GCGCTTGAGAAGCTGATAACGCGTTGCCGCCGCGACCCAGCTATAAATGGTGACAGGCGTTTCCCGTTCCCCGGTCCAGGCGATAACTCTCCGCAGGCGTTTGAGCTGCTTGTGGACGTCCTGCGCGGTTTCTACCGGCGTGTCAAAAAATTCGCGGAAAGTATCAGTGATCAATTCCGGGCGCGTATTCTGAATAAGATAAGTTTCGCAGGATTGGGTAATCAGCGTCAGCGATAGCGTATTGATCGCTTTTAAACGTCGATTG > NC_000913/3387223‑3387487
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
