Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A19 F48 I1 R1 83 81.6 2760494 99.1% 2735649 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,390,203 C→A R228R (CGC→CGA)  aaeR → LysR‑type transcriptional regulator AaeR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,390,2030CA100.0% 316.7 / NA 88R228R (CGC→CGA) aaeRLysR‑type transcriptional regulator AaeR
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (43/45);  total (43/45)

AGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAA  >  NC_000913/3390075‑3390338
                                                                                                                                  |                                                                                                                                       
agtCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGAcggc                                                                                                                              <  2:80093/140‑1 (MQ=255)
  tcattcatGGCTTGAATACAGCGTGCTGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGAGCCCACAAGGAAGATTTGTGAGTAATGATCCGATGACGCTGGTGCGATGGCTGAcggcgg                                                                                                                            >  2:961466/1‑140 (MQ=255)
   cattcatGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCggg                                                                                                                           >  1:786873/1‑140 (MQ=255)
     ttcatGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTg                                                                                                                         <  1:1251814/140‑1 (MQ=255)
     ttcatGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTg                                                                                                                         <  1:45358/140‑1 (MQ=255)
      tcatGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGc                                                                                                                        <  1:1023120/140‑1 (MQ=255)
         tGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGTAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCgg                                                                                                                     >  2:1035355/1‑140 (MQ=255)
         tGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCgg                                                                                                                     <  2:647649/140‑1 (MQ=255)
          ggCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCggg                                                                                                                    <  2:49482/140‑1 (MQ=255)
          ggCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATAG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGGGCCggg                                                                                                                    >  2:1086974/1‑140 (MQ=255)
           gCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCgggg                                                                                                                   >  1:932158/1‑139 (MQ=255)
            cTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGAt                                                                                                                  <  2:1224720/140‑1 (MQ=255)
              tGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGGGGCGGGaacc                                                                                                                >  2:1064245/1‑137 (MQ=255)
               gAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGc                                                                                                               >  2:855669/1‑140 (MQ=255)
                aaTACAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGcc                                                                                                              >  1:1209375/1‑140 (MQ=255)
                 aTACAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCt                                                                                                             <  2:694956/140‑1 (MQ=255)
                  tACAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTa                                                                                                            >  2:1019697/1‑140 (MQ=255)
                    cAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACg                                                                                                          <  2:932158/140‑1 (MQ=255)
                     aGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACACCGGAAGTGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTAc                                                                                                           >  2:742450/1‑140 (MQ=255)
                     aGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGt                                                                                                         >  2:702967/1‑140 (MQ=255)
                        gTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGcc                                                                                                      <  1:319499/140‑1 (MQ=255)
                        gTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGcc                                                                                                      <  2:804/140‑1 (MQ=255)
                        gTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGcc                                                                                                      <  1:702967/140‑1 (MQ=255)
                         tGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCg                                                                                                     >  1:778864/1‑140 (MQ=255)
                         tGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCg                                                                                                     >  1:587019/1‑140 (MQ=255)
                          gCGGCCCGACAATGAATTTGAACTGATCGCACACCGGAAGTGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGcc                                                                                                      <  1:742450/140‑1 (MQ=255)
                          gCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGc                                                                                                    >  1:205599/1‑140 (MQ=255)
                          gCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGc                                                                                                    >  1:1242548/1‑140 (MQ=255)
                          gCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGc                                                                                                    >  1:66610/1‑140 (MQ=255)
                          gCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGc                                                                                                    >  1:473371/1‑140 (MQ=255)
                          gCGACCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGc                                                                                                    >  1:1229793/1‑140 (MQ=255)
                            ggCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTg                                                                                                  >  1:405306/1‑140 (MQ=255)
                                cGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGAtgt                                                                                              <  2:136282/140‑1 (MQ=255)
                                 gACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGAtgtg                                                                                             <  2:1033236/140‑1 (MQ=255)
                                   aaaTGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTggg                                                                                           <  2:473371/139‑1 (MQ=255)
                                    aaTGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGt                                                                                          <  1:421543/140‑1 (MQ=255)
                                        aaTTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGGTGTCCTACGTGCCGCTGGTGTGGGGGAtt                                                                                      >  2:1172985/1‑139 (MQ=255)
                                        aaTTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATTGCCTACGTGCCGCTGATGTGGGTGATc                                                                                      >  1:589731/1‑140 (MQ=255)
                                        aaTTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATc                                                                                      >  1:30137/1‑140 (MQ=255)
                                        aaTTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGGGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATc                                                                                      >  1:82365/1‑140 (MQ=255)
                                         aTTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCa                                                                                     <  2:374376/140‑1 (MQ=255)
                                           ttGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAAc                                                                                   <  1:623246/140‑1 (MQ=255)
                                           ttGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAAc                                                                                   <  1:1035355/140‑1 (MQ=255)
                                           ttGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGCGCCGGGATCCCCTACGTTCCGCTGATGTGGGTGATCAAc                                                                                   >  2:463910/1‑140 (MQ=255)
                                             gAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACga                                                                                 >  1:495702/1‑140 (MQ=255)
                                                  gATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGGGCCGCTGAGGTGGGTGATTAACGAGATCa                                                                            >  2:1202235/1‑140 (MQ=255)
                                                  gATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGCGCCCGGATCCCCTACCGTCCGCTGCTGTGGGGGATCAACggcaaca                                                                            >  1:1025217/1‑134 (MQ=255)
                                                      g‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCg                                                                        <  1:855669/140‑1 (MQ=255)
                                                          aCCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTg                                                                      <  2:1186404/140‑1 (MQ=255)
                                                          aCCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTg                                                                      >  2:1168300/1‑140 (MQ=255)
                                                            cGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTggg                                                                    <  2:205599/140‑1 (MQ=255)
                                                            cGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTggg                                                                    <  2:469394/140‑1 (MQ=255)
                                                            cGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTggg                                                                    <  2:66610/140‑1 (MQ=255)
                                                            cGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTggg                                                                    <  2:1209375/140‑1 (MQ=255)
                                                              gAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGa                                                                  <  2:778864/140‑1 (MQ=255)
                                                                aGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGc                                                                <  1:1147809/140‑1 (MQ=255)
                                                                    aTCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGTCGGGATTGCCTTCGTGCCGCTCCTTTTGGTGCTCTACGAGATTTATCTAGGGGAGCtcgt                                                            >  2:428302/1‑137 (MQ=255)
                                                                      ctcGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGCTGTGGGGGATCAACGAGATCAATCGTGGGGGGCTGgaga                                                          >  2:1356834/1‑140 (MQ=255)
                                                                      ctcGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGgaga                                                          >  1:135889/1‑140 (MQ=255)
                                                                            tCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCctgc                                                    <  2:405928/140‑1 (MQ=255)
                                                                            tCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGGGCCGGGATTGCCTACGTGCCGCTGATGTGGGGGATCAACGAGATCAATCGTGGGGGGCTGGAGATCccgc                                                    >  2:1165229/1‑140 (MQ=255)
                                                                                 tGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCcg                                               <  1:1019697/140‑1 (MQ=255)
                                                                                 tGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCcg                                               <  2:109964/140‑1 (MQ=255)
                                                                                      ccACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTa                                          <  1:1054799/140‑1 (MQ=255)
                                                                                         caAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCa                                       >  1:157548/1‑140 (MQ=255)
                                                                                               aGATTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGa                                 >  1:590481/1‑140 (MQ=255)
                                                                                                 aTTTGTGACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCCGCCGCGTTACCAGTCAGATc                               >  1:702618/1‑140 (MQ=255)
                                                                                                      tgACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGc                          >  1:850826/1‑140 (MQ=255)
                                                                                                      tgACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCCACGGGCCGCGGGTGGGGGTGGTCAACGGGATCGATTTTGGGGAGCTTGAGATCCTTCTGCCTCGTTACCAGTCGAATCCACgg                          >  2:1011936/1‑139 (MQ=255)
                                                                                                       gACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGcc                         <  2:495702/140‑1 (MQ=255)
                                                                                                       gACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGcc                         <  2:589731/140‑1 (MQ=255)
                                                                                                       gACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGcc                         <  1:932462/140‑1 (MQ=255)
                                                                                                       gACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGcc                         <  1:1168300/140‑1 (MQ=255)
                                                                                                       gACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGcc                         <  2:135889/140‑1 (MQ=255)
                                                                                                       gACTAATGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGcc                         <  2:1282978/140‑1 (MQ=255)
                                                                                                           aaTGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGt                     <  1:759304/140‑1 (MQ=255)
                                                                                                             tGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGttt                   <  1:1283060/140‑1 (MQ=255)
                                                                                                             tGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGttt                   <  2:704264/140‑1 (MQ=255)
                                                                                                             tGATCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCCGCCGCGTTACCAGTCAGATCCACGCCCGGttt                   <  2:702618/140‑1 (MQ=255)
                                                                                                               aTCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTAt                 <  1:904223/140‑1 (MQ=255)
                                                                                                               aTCCGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTAt                 <  2:674004/140‑1 (MQ=255)
                                                                                                                 ccGATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCCACGTGCCGCTGATGTGGGTGGTTAACGAGATCAATCGTGGGGAGCCTGGGATCCTGCTGCCGCGTTACCAGCCAGATCCACGCCCGCGTTATGc               >  2:932462/1‑140 (MQ=255)
                                                                                                                   gATGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGt             >  2:986286/1‑140 (MQ=255)
                                                                                                                    aTGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGGTCGCCTACGTGCCGCTGATGTGGGTGGTCAACGAGATCAATCGGGGGGGGCTGGGGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTTTGCGtt            >  2:466688/1‑140 (MQ=255)
                                                                                                                    aTGACGCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGtt            >  1:502573/1‑140 (MQ=255)
                                                                                                                      gACGCTGGTGCGATGGCTGACGGCGGGGGCCGGGATCGCCTACGTGCCGCTGATGTGGGGGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGGTTATGCGTtat          >  2:344520/1‑140 (MQ=255)
                                                                                                                         gCTGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCCACGTGCCGCCGATGTGGGGGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTtatata       >  2:733313/1‑140 (MQ=255)
                                                                                                                           tGGTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATAcc     >  2:871000/1‑140 (MQ=255)
                                                                                                                             gTGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGa   <  1:433297/140‑1 (MQ=255)
                                                                                                                              tGCGATGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGGTGTGGGGGATCAACGAGATCAATCGTGGGGGGCTGGAGATTCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGaa  >  2:84903/1‑140 (MQ=255)
                                                                                                                                  |                                                                                                                                       
AGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCG‑‑CACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGTCAGATCCACGCCCGGTTTATGCGTTATATACCGAA  >  NC_000913/3390075‑3390338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A