Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F48 I1 R1 56 123.4 4244010 99.1% 4205813 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,392,980 G→T P1093P (CCC→CCA)  yhdP ← AsmA2 domain‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,392,9800GT100.0% 442.2 / NA 123P1093P (CCC→CCA) yhdPAsmA2 domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (71/52);  total (71/52)

Only 100 of 125 total aligned reads displayed.

CTTACGCATCAGGGCATCTACGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTCA  >  NC_000913/3392848‑3393112
                                                                                                                                    |                                                                                                                                    
cTTACGCATCAGGGCATCTACGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCtt                                                                                                                               >  1:1861111/1‑140 (MQ=255)
cTTACGCATCAGGGCATCTACGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCtt                                                                                                                               >  1:1737253/1‑140 (MQ=255)
cTTACGCATCAGGGCATCTACGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCtt                                                                                                                               <  1:980850/140‑1 (MQ=255)
  tACGCATCAGGGCATCTACGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTg                                                                                                                             <  2:1605088/140‑1 (MQ=255)
     gCATCAGGGCATCTACGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTgcgc                                                                                                                          <  2:1783535/140‑1 (MQ=255)
     gCATCAGGGCATCTACGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTgcgc                                                                                                                          <  1:334986/140‑1 (MQ=255)
     gCATCAGGGCATCTACGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTgcgc                                                                                                                          <  2:1162607/140‑1 (MQ=255)
      cATCAGGGCATCTACGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGcc                                                                                                                         <  1:1040994/140‑1 (MQ=255)
      cATCAGGGCATCTACGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGcc                                                                                                                         <  2:1741423/140‑1 (MQ=255)
      cATCAGGGCATCTACGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGcc                                                                                                                         >  2:780179/1‑140 (MQ=255)
      cATCAGGGCATCTACGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGcc                                                                                                                         <  1:506227/140‑1 (MQ=255)
          aGGGCATCTACGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAgtt                                                                                                                     >  2:193316/1‑139 (MQ=255)
           gggCATCTACGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAgtgt                                                                                                                    <  1:1122727/140‑1 (MQ=255)
            ggCATCTACGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTa                                                                                                                   >  2:1716106/1‑140 (MQ=255)
                 cTACGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCg                                                                                                              >  2:162005/1‑140 (MQ=255)
                   aCGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTa                                                                                                            <  1:656677/140‑1 (MQ=255)
                    agCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTaa                                                                                                           <  2:1871977/139‑1 (MQ=255)
                     gCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAAt                                                                                                          <  1:1661872/140‑1 (MQ=255)
                     gCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAAt                                                                                                          <  1:1895851/140‑1 (MQ=255)
                      cTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATc                                                                                                         >  2:1689533/1‑140 (MQ=255)
                      cTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATc                                                                                                         >  1:294464/1‑140 (MQ=255)
                        cAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCca                                                                                                       >  1:749457/1‑140 (MQ=255)
                          aTAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCcaca                                                                                                     <  1:2033864/140‑1 (MQ=255)
                           tAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACAt                                                                                                    <  2:1861111/140‑1 (MQ=255)
                               cgcAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTaaa                                                                                                >  2:207062/1‑140 (MQ=255)
                               cgcAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTaaa                                                                                                >  1:1996169/1‑140 (MQ=255)
                                 cagcaATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATg                                                                                              >  1:357045/1‑140 (MQ=255)
                                 cagcaATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATg                                                                                              >  1:1763442/1‑140 (MQ=255)
                                   gcaATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATgac                                                                                            >  2:89433/1‑140 (MQ=255)
                                      aTTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATgacgac                                                                                         <  2:751165/140‑1 (MQ=255)
                                      aTTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATgacgac                                                                                         <  1:1586032/140‑1 (MQ=255)
                                      aTTGACCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGNCTGCCATGGTGCTTTGCGCCNGTGTAAATCGTAATCCACATTAAATgacgac                                                                                         <  1:715574/140‑1 (MQ=255)
                                         gCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTgg                                                                                      >  1:1196839/1‑140 (MQ=255)
                                                 tGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATggg                                                                              <  1:542138/140‑1 (MQ=255)
                                                 tGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATggg                                                                              <  1:43474/140‑1 (MQ=255)
                                                         aTTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGa                                                                      <  1:534076/140‑1 (MQ=255)
                                                          ttGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGac                                                                     >  2:1373185/1‑140 (MQ=255)
                                                             aTTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACAcc                                                                  >  2:819875/1‑140 (MQ=255)
                                                                   gTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCaaaaaa                                                            <  1:88413/140‑1 (MQ=255)
                                                                          cGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTgcg                                                     <  1:1758969/140‑1 (MQ=255)
                                                                            ccTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTgcggc                                                   >  1:1005627/1‑140 (MQ=255)
                                                                              tttACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGcggcgg                                                 <  1:344047/140‑1 (MQ=255)
                                                                                     aGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAAt                                          >  2:481529/1‑140 (MQ=255)
                                                                                       ttGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAAttt                                        >  2:792475/1‑140 (MQ=255)
                                                                                       ttGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAAttt                                        >  1:1931373/1‑140 (MQ=255)
                                                                                       ttGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAAttt                                        >  1:658560/1‑140 (MQ=255)
                                                                                         gAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTc                                      >  1:1841649/1‑140 (MQ=255)
                                                                                          aGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCt                                     >  1:292417/1‑140 (MQ=255)
                                                                                          aGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCt                                     >  2:1749938/1‑140 (MQ=255)
                                                                                          aGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCt                                     >  2:628913/1‑140 (MQ=255)
                                                                                          aGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCt                                     >  2:1136066/1‑140 (MQ=255)
                                                                                            tATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGc                                   >  1:1683022/1‑140 (MQ=255)
                                                                                            tATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGc                                   >  1:1426480/1‑140 (MQ=255)
                                                                                            tATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGAAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGc                                   >  1:19572/1‑140 (MQ=255)
                                                                                                 atgatgCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCcgcg                              >  1:392917/1‑140 (MQ=255)
                                                                                                 atgatgCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCcgcg                              >  2:670558/1‑140 (MQ=255)
                                                                                                 atgatgCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCcgcg                              <  2:789447/140‑1 (MQ=255)
                                                                                                 atgatgCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCcgcg                              >  2:388452/1‑140 (MQ=255)
                                                                                                 atgatgCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCcgcg                              <  1:1373185/140‑1 (MQ=255)
                                                                                                 atgatgCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCcgcg                              >  2:386778/1‑140 (MQ=255)
                                                                                                 atgatgCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCcgcg                              >  1:3166/1‑140 (MQ=255)
                                                                                                 atgatgCCATTCAACGTCGCTTCATCTAGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCcgcg                              <  1:1320914/140‑1 (MQ=255)
                                                                                                    atgCCATTCAACGTCGCTTCATCTGGCTGCCATTGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCat                           >  2:916525/1‑139 (MQ=255)
                                                                                                    atgCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGTGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCat                           >  2:108841/1‑139 (MQ=255)
                                                                                                    atgCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAg                           >  2:1574358/1‑140 (MQ=255)
                                                                                                    atgCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAg                           >  1:2026689/1‑140 (MQ=255)
                                                                                                    atgCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAg                           >  1:721094/1‑140 (MQ=255)
                                                                                                    atgCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAg                           >  2:196818/1‑140 (MQ=255)
                                                                                                      gCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGTGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGtt                         >  2:1438171/1‑140 (MQ=255)
                                                                                                      gCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGtt                         >  1:27216/1‑140 (MQ=255)
                                                                                                      gCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGtt                         >  2:2051484/1‑140 (MQ=255)
                                                                                                      gCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGtt                         >  1:1195006/1‑140 (MQ=255)
                                                                                                      gCCATTCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCAGCGCAGtt                         >  1:952146/1‑140 (MQ=255)
                                                                                                      gCCATTCAACGTCGCTTCATCTGGCTACCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGtt                         >  1:1429368/1‑140 (MQ=255)
                                                                                                      gCCATTCAACGTCGCTTCACCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGtt                         >  2:276235/1‑140 (MQ=255)
                                                                                                          ttCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCcgcg                              >  2:1447968/1‑131 (MQ=255)
                                                                                                          ttCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCcgcg                              <  1:1447968/131‑1 (MQ=255)
                                                                                                          ttCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTcc                     >  1:1105306/1‑140 (MQ=255)
                                                                                                          ttCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTcc                     >  2:1113791/1‑140 (MQ=255)
                                                                                                           tCAACGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGTGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCt                    <  1:1438171/140‑1 (MQ=255)
                                                                                                            aaaCGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCtt                   <  2:13556/139‑1 (MQ=255)
                                                                                                               cGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCa                <  1:1716106/140‑1 (MQ=255)
                                                                                                               cGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCa                >  2:25414/1‑140 (MQ=255)
                                                                                                               cGTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCa                >  2:100326/1‑140 (MQ=255)
                                                                                                                gTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAg               >  2:579228/1‑140 (MQ=255)
                                                                                                                gTCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAg               <  1:1501005/140‑1 (MQ=255)
                                                                                                                 tCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGc              <  2:1931373/140‑1 (MQ=255)
                                                                                                                 tCGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGc              <  2:1737253/140‑1 (MQ=255)
                                                                                                                  cGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCa                >  2:182754/1‑137 (MQ=255)
                                                                                                                  cGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCa                <  1:182754/137‑1 (MQ=255)
                                                                                                                  cGCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCg             <  2:392917/140‑1 (MQ=255)
                                                                                                                   gCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGa            >  2:967732/1‑140 (MQ=255)
                                                                                                                   gCTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGa            >  1:454434/1‑140 (MQ=255)
                                                                                                                    cTTCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAg           >  2:2024546/1‑140 (MQ=255)
                                                                                                                     ttCATCTGGCTGCCATTGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAgg          <  1:916525/140‑1 (MQ=255)
                                                                                                                     ttCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGGCACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAgg          <  2:714352/140‑1 (MQ=255)
                                                                                                                     ttCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAgg          <  1:276235/140‑1 (MQ=255)
                                                                                                                     ttCATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAgg          <  1:1574358/140‑1 (MQ=255)
                                                                                                                       cATCTGGCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTa        <  1:1179497/140‑1 (MQ=255)
                                                                                                                             gCTGCCATGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTCa  <  1:2049498/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                    
CTTACGCATCAGGGCATCTACGCTCAATAAGCGCAGCAATTGCCCGGCATGTCCGGTATTGATTTCGGTAATTTCGCCTTTACCCAGTTGAGTATGAATGATGCCATTCAACGTCGCTTCATCTGGCTGCCAGGGTGCTTTGCGCCAGTGTAAATCGTAATCCACATTAAATGACGACTGGCGTATGGGCGTCGTGACACCAAAAAATTCTGCGGCGGCATCAATTTTCTGCCCGCGCAGTTTTCCTTTCAGCGAGGTACGTTCA  >  NC_000913/3392848‑3393112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A