Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,465,252 G→T W57C (TGG→TGT)  gspM → Type II secretion system protein GspM

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,465,2520GT100.0% 322.1 / NA 94W57C (TGG→TGT) gspMType II secretion system protein GspM
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (54/40);  total (54/40)

CGGAAAAACAGATCGTTGCGGCACTGGCGGTTCTCTCGCTCGGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGGATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTG  >  NC_000913/3465116‑3465387
                                                                                                                                        |                                                                                                                                       
cGGAAAAACAGATCGTTGCGGCACTGGCGGTTCTCTCGCTCGGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATg                                                                                                                                      <  1:1386081/140‑1 (MQ=255)
 ggAAAAACAGATCGTTGCGGCACTGGCGGTTCTCTCGCTCGGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGc                                                                                                                                     <  1:2054480/140‑1 (MQ=255)
 ggAAAAACAGATCGTTGCGGCACTGGCGGTTCTCTCGCTCGGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGc                                                                                                                                     <  1:1098102/140‑1 (MQ=255)
              gTTGCGGCACTGGCGGTTCTCTCGCTCGGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAg                                                                                                                        <  2:4067/140‑1 (MQ=255)
                  cGGCACTGGCGGTTCTCTCGCTCGGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCAcc                                                                                                                    <  1:2095343/140‑1 (MQ=255)
                  cGGCACTGGCGGTTCTCTCGCTCGGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCAcc                                                                                                                    <  1:1125430/140‑1 (MQ=255)
                   ggCACTGGCGGTTCTCTCGCTCGGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCAccc                                                                                                                   <  1:1449948/140‑1 (MQ=255)
                           cGGTTCTCTCGCTCGGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTa                                                                                                           <  1:1700720/140‑1 (MQ=255)
                           aggTTCTCTCGCTCGGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTa                                                                                                           <  2:1872613/139‑1 (MQ=255)
                               tctctcGCCCGGCGGTTTTTTTTGGGTTGGGGGGGTAAAAACGATAGATACCTACATTTGTGAGCATCAGTCCCCCGCGCCGAAAAATAAAAAGGACATCAAAAGTATGCAGGATCAAGCGAGCACCCATGGGTTACTCg                                                                                                       >  2:1927148/1‑140 (MQ=255)
                                ctctcGCTCGGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCTCGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCgg                                                                                                      <  1:818422/140‑1 (MQ=255)
                                atctcGCTCGGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCgg                                                                                                      <  2:896875/139‑1 (MQ=255)
                                 tctcGCTCGGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGt                                                                                                     <  1:613840/140‑1 (MQ=255)
                                    cgctcgGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGATCATCAGTCCCATGCGCAAAAAATTAAGAAGAACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCac                                                                                                  >  1:945840/1‑139 (MQ=255)
                                    cgctcgGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCAt                                                                                                  >  1:40009/1‑140 (MQ=255)
                                      ctcgGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGATGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATcc                                                                                                <  1:1460013/140‑1 (MQ=255)
                                      ctcgGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATcc                                                                                                <  1:2120263/140‑1 (MQ=255)
                                                       gCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCa                                                                               >  2:431142/1‑140 (MQ=255)
                                                        cTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCAt                                                                              <  1:1506847/140‑1 (MQ=255)
                                                        cTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCAt                                                                              <  2:2125357/140‑1 (MQ=255)
                                                          tGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCa                                                                            >  2:604374/1‑140 (MQ=255)
                                                              gTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCaaaaa                                                                        >  2:79305/1‑140 (MQ=255)
                                                              gTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCaaaaa                                                                        <  1:1641707/140‑1 (MQ=255)
                                                                 aTAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAatat                                                                     >  2:1428664/1‑140 (MQ=255)
                                                                 aTAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAatat                                                                     >  2:1671378/1‑140 (MQ=255)
                                                                 aTAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATATATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAatat                                                                     >  1:960252/1‑140 (MQ=255)
                                                                   aaaaCCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATcc                                                                   <  2:1855978/140‑1 (MQ=255)
                                                                        cGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTtctc                                                              >  1:1092777/1‑140 (MQ=255)
                                                                          atagataCCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGa                                                            <  2:33300/140‑1 (MQ=255)
                                                                           tagataCCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAg                                                           >  2:88471/1‑140 (MQ=255)
                                                                           tagataCCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAg                                                           >  2:553907/1‑140 (MQ=255)
                                                                              ataCCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAg                                                           >  1:211936/1‑137 (MQ=255)
                                                                              ataCCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAg                                                           <  2:211936/137‑1 (MQ=255)
                                                                              ataCCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATC‑AATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAg                                                       <  1:1003456/140‑1 (MQ=255)
                                                                                aCCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGc                                                      >  1:762557/1‑140 (MQ=255)
                                                                                aCCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGc                                                      >  2:1657976/1‑140 (MQ=255)
                                                                                  cTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAata                                                                      >  1:1600838/1‑122 (MQ=255)
                                                                                  cTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAata                                                                      <  2:1600838/122‑1 (MQ=255)
                                                                                  cTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCaa                                                    <  1:1428664/140‑1 (MQ=255)
                                                                                    aCATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCaaaa                                                  >  1:1655086/1‑140 (MQ=255)
                                                                                    aCATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCaaaa                                                  >  2:522762/1‑140 (MQ=255)
                                                                                    aCATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCaaaa                                                  >  2:189450/1‑140 (MQ=255)
                                                                                     cATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAAc                                                 >  1:41412/1‑140 (MQ=255)
                                                                                     cATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAAc                                                 >  2:293175/1‑140 (MQ=255)
                                                                                     cATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAAc                                                 >  1:1774074/1‑140 (MQ=255)
                                                                                        tGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTg                                              >  1:377515/1‑140 (MQ=255)
                                                                                        tGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTg                                              >  1:922956/1‑140 (MQ=255)
                                                                                        tGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTg                                              >  2:2040012/1‑140 (MQ=255)
                                                                                        tGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTg                                              >  1:357714/1‑140 (MQ=255)
                                                                                          cAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTgag                                            >  1:143627/1‑140 (MQ=255)
                                                                                          cAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTgag                                            >  2:158194/1‑140 (MQ=255)
                                                                                          cAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTgag                                            >  2:1337151/1‑140 (MQ=255)
                                                                                          cAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTgag                                            >  1:368119/1‑140 (MQ=255)
                                                                                          cAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTgag                                            >  2:47016/1‑140 (MQ=255)
                                                                                            gagCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTgagat                                          >  2:751978/1‑139 (MQ=255)
                                                                                            gagCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTgagat                                          >  2:1977409/1‑139 (MQ=255)
                                                                                            gagCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGaa                                          >  1:1118589/1‑140 (MQ=255)
                                                                                               cATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAAttt                                       >  2:1018880/1‑140 (MQ=255)
                                                                                               cATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAAttt                                       >  1:1115338/1‑140 (MQ=255)
                                                                                               cATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAAttt                                       >  2:1742244/1‑140 (MQ=255)
                                                                                                 tCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTgg                                     <  2:299864/140‑1 (MQ=255)
                                                                                                  cAGTCCCACGCGCAAAAAATTAANAAGGACATCAAATGTATGCAGGATCAANNNAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGc                                    >  1:110523/1‑140 (MQ=255)
                                                                                                  cAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGc                                    >  1:1053227/1‑140 (MQ=255)
                                                                                                  cAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGc                                    >  2:1549505/1‑140 (MQ=255)
                                                                                                  cAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGc                                    >  1:1916637/1‑140 (MQ=255)
                                                                                                    gTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTa                                  >  1:1414978/1‑140 (MQ=255)
                                                                                                     tCCCACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTAt                                 <  2:41412/140‑1 (MQ=255)
                                                                                                       ccACGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCa                               <  2:143627/140‑1 (MQ=255)
                                                                                                         aCGCGCAAAAAATTAGGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACg                             >  1:763374/1‑140 (MQ=255)
                                                                                                         aCGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAATACGTGAGAATTTGGCTATCACg                             >  1:1797030/1‑140 (MQ=255)
                                                                                                         aCGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACg                             >  2:1701186/1‑140 (MQ=255)
                                                                                                         aCGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACg                             >  1:1820455/1‑140 (MQ=255)
                                                                                                         aCGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACg                             >  1:47985/1‑140 (MQ=255)
                                                                                                         aCGCGCAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACg                             >  2:1009359/1‑140 (MQ=255)
                                                                                                            cgcAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTg                          >  1:994168/1‑140 (MQ=255)
                                                                                                             gcAAAAAATTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTgg                         >  2:1628832/1‑140 (MQ=255)
                                                                                                               aaaaaaTTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGaa                       >  1:557620/1‑140 (MQ=255)
                                                                                                               aaaaaaTTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGaa                       >  2:1306644/1‑140 (MQ=255)
                                                                                                                aaaaaTTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGaaa                      <  1:1009359/140‑1 (MQ=255)
                                                                                                                aaaaaTTAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGaaa                      <  1:1701186/140‑1 (MQ=255)
                                                                                                                     ttAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGc                 <  1:1018880/140‑1 (MQ=255)
                                                                                                                     ttAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGc                 <  1:1628832/140‑1 (MQ=255)
                                                                                                                     ttAAGAAGGACAGCAAATGTATGCAGGATCAAGCGAGCACTCATAGTTTACTCGGTCATCCTGCGTTTACGCAGCGCAACAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGc                 <  2:960252/140‑1 (MQ=255)
                                                                                                                     atAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGc                 <  2:831614/139‑1 (MQ=255)
                                                                                                                     atAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGc                 <  2:1092777/139‑1 (MQ=255)
                                                                                                                      tAAGAAGGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGcc                <  1:522762/140‑1 (MQ=255)
                                                                                                                       aagaagGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGccc               <  2:1053227/140‑1 (MQ=255)
                                                                                                                       aagaagGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGccc               <  2:1290271/140‑1 (MQ=255)
                                                                                                                       aagaagGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCAACCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGccc               <  2:893010/140‑1 (MQ=255)
                                                                                                                          aagGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGa            <  2:377515/140‑1 (MQ=255)
                                                                                                                          aagGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGa            <  2:1216628/140‑1 (MQ=255)
                                                                                                                          aagGACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGa            <  2:374064/140‑1 (MQ=255)
                                                                                                                             gACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACaa         >  1:81189/1‑140 (MQ=255)
                                                                                                                             gACATCAAATGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACaa         >  2:915401/1‑140 (MQ=255)
                                                                                                                             gACATCAAATGTATACAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACaa         >  2:577265/1‑140 (MQ=255)
                                                                                                                                    aaTGTATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTg  <  1:1397485/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
CGGAAAAACAGATCGTTGCGGCACTGGCGGTTCTCTCGCTCGGCGTTTTTTGTTGGCTTGGGGTGATAAAACCGATAGATACCTACATTGCAGAGCATCAGTCCCACGCGCAAAAAATTAAGAAGGACATCAAATGGATGCAGGATCAAGCGAGCACCCATGGTTTACTCGGTCATCCTGCGCTTACGCAGCCCATCAAAAATATCCTTCTCGAGGAAGCAAAACGTGAGAATTTGGCTATCACGCTGGAAAACGGCCCGGACAATACTCTG  >  NC_000913/3465116‑3465387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A