Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F48 I1 R1	79	90.7	3162666	99.0%	3131039	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,468,244	T→C	D537G (GAT→GGT)	chiA ←	endochitinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,468,244	0	T	C	100.0%	370.9 / NA	94	D537G (GAT→GGT)	chiA	endochitinase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (44/50); total (44/50)

CTTTCTTCGGCGTACCTACGCGCTCTTTGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTATCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGC  >  NC_000913/3468107‑3468377

cTTTCTTCGGCGTACCTACGCGCTCTTTGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCg                                                                                                                                     <  2:455570/140‑1 (MQ=255)

cTTTCTTCGGCGTACCTACGCGCTCTTTGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCg                                                                                                                                     <  1:1127075/140‑1 (MQ=255)

cTTTCTTCGGCGTACCTACGCGCTCTTTGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCg                                                                                                                                     <  2:559103/140‑1 (MQ=255)

           gTACCTACGCGCTCTTTGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAg                                                                                                                          <  2:1556998/140‑1 (MQ=255)

             aCCTACGCGCTCTTTGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCg                                                                                                                        >  1:1390317/1‑140 (MQ=255)

             aCCTACGCGCTCTTTGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCg                                                                                                                        >  1:1229471/1‑140 (MQ=255)

                tACGCGCTCTTTGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGTGttt                                                                                                                     <  2:777402/140‑1 (MQ=255)

                tACGCGCTCTTTGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACGTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGttt                                                                                                                     <  1:464466/140‑1 (MQ=255)

                aaCGCGCTCTTTGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGttt                                                                                                                     <  2:515896/139‑1 (MQ=255)

                      ctctTTGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGAt                                                                                                               >  2:1469642/1‑140 (MQ=255)

                      ctctTTGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCT‑AGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGAtt                                                                                                              >  2:1208501/1‑140 (MQ=255)

                      ctctTTGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGGTGCTGTCAGAAGGAGAAACTTACTGCACTTTACTCTGAGAAATGTAGGTAACACCGTTAAAGCGAATCAGTGTACCGCTGGCATAAAGCGTTTCTGGAt                                                                                                               >  2:1488213/1‑140 (MQ=255)

                        ctTTGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTa                                                                                                             >  1:1274634/1‑140 (MQ=255)

                         tttGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAACCTTTCTGCCCTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTaa                                                                                                            >  2:483693/1‑140 (MQ=255)

                         tttGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTaa                                                                                                            >  1:1131850/1‑140 (MQ=255)

                           tGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAAc                                                                                                          >  1:746922/1‑140 (MQ=255)

                           tGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAAc                                                                                                          >  2:541437/1‑140 (MQ=255)

                             gTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTg                                                                                                        <  2:1229471/140‑1 (MQ=255)

                               tCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTgcg                                                                                                      <  2:181379/140‑1 (MQ=255)

                               tCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTgcg                                                                                                      <  1:107645/140‑1 (MQ=255)

                               tCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTgcg                                                                                                      <  1:761537/140‑1 (MQ=255)

                                 cGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTgcggc                                                                                                    >  1:666187/1‑140 (MQ=255)

                                 cGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTgcggc                                                                                                    >  2:228065/1‑140 (MQ=255)

                                 cGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTgcggc                                                                                                    >  2:1464382/1‑140 (MQ=255)

                                  ggTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTgcggcg                                                                                                   <  1:345729/140‑1 (MQ=255)

                                  ggTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTgcggcg                                                                                                   <  1:911567/140‑1 (MQ=255)

                                   gTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGgcgc                                                                                                  >  2:1486700/1‑140 (MQ=255)

                                   gTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGgcgc                                                                                                  >  1:1267740/1‑140 (MQ=255)

                                   gTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGgcgc                                                                                                  >  2:1189826/1‑140 (MQ=255)

                                    tCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAATTGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCa                                                                                                 <  1:1539609/140‑1 (MQ=255)

                                    tCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCa                                                                                                 <  1:861401/140‑1 (MQ=255)

                                    tCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCa                                                                                                 <  1:1312063/140‑1 (MQ=255)

                                        gTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCattat                                                                                             >  1:403904/1‑140 (MQ=255)

                                             caaAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGc                                                                                        >  1:800508/1‑140 (MQ=255)

                                              aaaaaCACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGct                                                                                       <  1:1189826/140‑1 (MQ=255)

                                              aaaaaCACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGct                                                                                       <  1:1464382/140‑1 (MQ=255)

                                               aaaaCACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGctc                                                                                      <  2:114934/140‑1 (MQ=255)

                                                  acacGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTc                                                                                   <  2:1017118/140‑1 (MQ=255)

                                                  acacGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTc                                                                                   <  1:1486700/140‑1 (MQ=255)

                                                   cacGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCg                                                                                  >  1:1321524/1‑140 (MQ=255)

                                                   cacGCCACGGGTTGCTGTCAG‑AGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCACATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGt                                                                                 <  2:979572/140‑1 (MQ=255)

                                                    acGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGt                                                                                 <  1:512666/140‑1 (MQ=255)

                                                    acGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGt                                                                                 <  2:993740/140‑1 (MQ=255)

                                                    acGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGt                                                                                 <  2:1267740/140‑1 (MQ=255)

                                                    acGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGt                                                                                 <  1:1469642/140‑1 (MQ=255)

                                                     cGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGtt                                                                                >  2:107280/1‑140 (MQ=255)

                                                       ccACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGc                                                                              >  2:739682/1‑140 (MQ=255)

                                                       ccACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGc                                                                              >  2:1575632/1‑140 (MQ=255)

                                                       ccACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGc                                                                              >  2:925875/1‑140 (MQ=255)

                                                         aCGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCta                                                                            <  2:1274634/140‑1 (MQ=255)

                                                              ttGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGct                                                                       >  1:277923/1‑140 (MQ=255)

                                                                   gTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAg                                                                  <  1:291741/140‑1 (MQ=255)

                                                                     cAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGcc                                                                <  1:649961/140‑1 (MQ=255)

                                                                            agaAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTa                                                         <  1:1023715/140‑1 (MQ=255)

                                                                            agaAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTa                                                         >  1:1214021/1‑140 (MQ=255)

                                                                              aaaCTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAAc                                                       >  2:396887/1‑140 (MQ=255)

                                                                               aaCTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACg                                                      <  1:235098/140‑1 (MQ=255)

                                                                               aaCTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACg                                                      <  2:1390317/140‑1 (MQ=255)

                                                                               aaCTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAACGAATCAGCGTACCACTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACg                                                      <  1:855791/140‑1 (MQ=255)

                                                                                          cTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACggg                                           <  2:1131850/140‑1 (MQ=255)

                                                                                          cTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACggg                                           <  2:800508/140‑1 (MQ=255)

                                                                                             tACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCATACCTAACGGCTTCCACGggcgg                                        >  2:1278859/1‑140 (MQ=255)

                                                                                               ctctGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCt                                      <  1:102950/140‑1 (MQ=255)

                                                                                                   gagaAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTg                                  >  2:748312/1‑140 (MQ=255)

                                                                                                    agaAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGc                                 >  1:661181/1‑140 (MQ=255)

                                                                                                     gaAATGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCt                                >  2:716059/1‑140 (MQ=255)

                                                                                                       aaTGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGggcgg                                        <  1:185812/130‑1 (MQ=255)

                                                                                                       aaTGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGggcgg                                        >  2:185812/1‑130 (MQ=255)

                                                                                                       aaTGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTAc                              >  1:313746/1‑140 (MQ=255)

                                                                                                       aaTGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTAc                              >  2:867593/1‑140 (MQ=255)

                                                                                                         tGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCg                            >  2:961157/1‑140 (MQ=255)

                                                                                                         tGTAGTTCACACCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCg                            >  1:1418513/1‑140 (MQ=255)

                                                                                                                   acCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGtttt                  >  2:1330738/1‑140 (MQ=255)

                                                                                                                   acCGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGtttt                  >  2:814821/1‑140 (MQ=255)

                                                                                                                     cGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTgt                >  2:574519/1‑139 (MQ=255)

                                                                                                                     cGTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTgg                >  1:469562/1‑140 (MQ=255)

                                                                                                                      gTTAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGt               >  2:1010728/1‑140 (MQ=255)

                                                                                                                       ttAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGtt              >  1:879487/1‑140 (MQ=255)

                                                                                                                        tAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTc             <  2:661181/140‑1 (MQ=255)

                                                                                                                        tAAAGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTc             <  1:483693/140‑1 (MQ=255)

                                                                                                                           aGCGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCAGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGcc          <  1:1095860/140‑1 (MQ=255)

                                                                                                                             cGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGccac        <  1:716059/140‑1 (MQ=255)

                                                                                                                             cGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGccac        <  1:925875/140‑1 (MQ=255)

                                                                                                                             cGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGccac        <  1:1575632/140‑1 (MQ=255)

                                                                                                                             cGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGccac        >  1:936820/1‑140 (MQ=255)

                                                                                                                             cGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGccac        <  2:1162563/140‑1 (MQ=255)

                                                                                                                             cGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGccac        <  1:12136/140‑1 (MQ=255)

                                                                                                                             cGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGccac        <  2:1214021/140‑1 (MQ=255)

                                                                                                                             cGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGccac        <  1:1208501/140‑1 (MQ=255)

                                                                                                                             cGAATCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACCGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGccac        <  2:610047/140‑1 (MQ=255)

                                                                                                                               aaTCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGccacca      >  1:899448/1‑140 (MQ=255)

                                                                                                                                 tCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCaga    <  1:748312/140‑1 (MQ=255)

                                                                                                                                 tCAGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCaga    >  1:970964/1‑140 (MQ=255)

                                                                                                                                   aGCGTACCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGc  <  2:1321524/140‑1 (MQ=255)

CTTTCTTCGGCGTACCTACGCGCTCTTTGGTTCCGGTCCAGTCAACAAAAACACGCCACGGGTTGCTGTCAGAAGGAGAAACTTTCTGCACTTTACTCTGAGAAATGTAGTTCACACCGTTAAAGCGAATCAGCGTATCGCTGGCATAAAGCGTTTCTGGATTAAACTGCGGCGCATTATTCAGCTCTTCGTTGCTATAGCTCTGAGCCTTACCTAACGGCTTCCACGGGCGGCTATTGCTACCGGTGGCGTTTTGGTTCGCCACCAGAGC  >  NC_000913/3468107‑3468377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A