Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,479,030 C→A L526L (CTG→CTT)  kefB ← K(+) : H(+) antiporter KefB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,479,0300CA100.0% 354.6 / NA 103L526L (CTG→CTT) kefBK(+) : H(+) antiporter KefB
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (48/55);  total (48/55)

Only 100 of 108 total aligned reads displayed.

TGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTGGCATATTTCCAC  >  NC_000913/3478891‑3479164
                                                                                                                                           |                                                                                                                                      
tGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGcccc                                                                                                                                        <  1:514060/140‑1 (MQ=255)
  gcgcGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCCCGCTGCTTCCGCATATCGAGGCGGCGAAAATGCACTTGCGCTCGCCGTGCCTGATGCGGAGGCATGCCAAGCGTGACCAGCGTCGTGCGCCCAAg                                                                                                                                      <  2:1965690/140‑1 (MQ=255)
       agaAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTa                                                                                                                                 <  2:1007993/140‑1 (MQ=255)
       agaAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTa                                                                                                                                 >  2:740656/1‑140 (MQ=255)
       agaAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTa                                                                                                                                 >  2:1397091/1‑140 (MQ=255)
       agaAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTa                                                                                                                                 >  1:807098/1‑140 (MQ=255)
       agaAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTa                                                                                                                                 <  1:476447/140‑1 (MQ=255)
          aaTTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACg                                                                                                                              <  1:1909101/140‑1 (MQ=255)
          aaTTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACg                                                                                                                              <  1:800443/140‑1 (MQ=255)
            tttGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCa                                                                                                                            <  2:1492955/140‑1 (MQ=255)
            attGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCa                                                                                                                            <  2:1959459/139‑1 (MQ=255)
                 aCGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGga                                                                                                                       <  2:496215/140‑1 (MQ=255)
                     tATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAAt                                                                                                                   >  2:587568/1‑140 (MQ=255)
                      aTCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATg                                                                                                                  <  1:638544/140‑1 (MQ=255)
                       tCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCAGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGt                                                                                                                 >  1:954603/1‑140 (MQ=255)
                         ggCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGttt                                                                                                               <  1:1343006/140‑1 (MQ=255)
                               catTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACggg                                                                                                         >  1:1933897/1‑140 (MQ=255)
                               catTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACggg                                                                                                         >  1:259160/1‑140 (MQ=255)
                               catTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACggg                                                                                                         >  1:376735/1‑140 (MQ=255)
                               catTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACggg                                                                                                         >  2:1591087/1‑140 (MQ=255)
                               catTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACggg                                                                                                         >  2:65306/1‑140 (MQ=255)
                                    ggATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAAc                                                                                                    >  1:1208393/1‑140 (MQ=255)
                                        gAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCg                                                                                                <  2:620808/140‑1 (MQ=255)
                                        gAGCTCTCGAAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCg                                                                                                <  1:65306/140‑1 (MQ=255)
                                         aGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGt                                                                                               >  2:93168/1‑140 (MQ=255)
                                         aGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGt                                                                                               <  1:2089817/140‑1 (MQ=255)
                                         aGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGt                                                                                               >  2:1552869/1‑140 (MQ=255)
                                         aGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGt                                                                                               >  1:1686786/1‑140 (MQ=255)
                                         aGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGt                                                                                               >  1:1638376/1‑140 (MQ=255)
                                         aGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGt                                                                                               >  1:1293119/1‑140 (MQ=255)
                                         aGCACTCGCACCATCCTCATACCCAGGCGGCTAAAATGCAGTTGCGCTCGCTGTGCCTGACTCGGTCGCATGCCAAGCGATAGCACCGCCCTGCCCCCCATCTCTACCGCACTGGAGAATGTTTCACGTGAAATCTGCGt                                                                                               >  2:1013108/1‑140 (MQ=255)
                                           ctctCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCa                                                                                             >  2:257983/1‑140 (MQ=255)
                                           ctctCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCa                                                                                             >  2:316173/1‑140 (MQ=255)
                                              tcGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGGCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCAccc                                                                                          <  2:1403695/140‑1 (MQ=255)
                                              tcGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCAccc                                                                                          >  2:1260355/1‑140 (MQ=255)
                                              tcGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCAccc                                                                                          <  2:1293119/140‑1 (MQ=255)
                                               cGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCAcccc                                                                                         <  1:587754/140‑1 (MQ=255)
                                                 cagcaTCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCcctg                                                                                       <  1:587568/140‑1 (MQ=255)
                                                  agcaTCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCcctgc                                                                                      <  1:686946/140‑1 (MQ=255)
                                                  agcaTCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCcctgc                                                                                      <  2:947422/140‑1 (MQ=255)
                                                  agcaTCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCcctgc                                                                                      <  1:1523121/140‑1 (MQ=255)
                                                  agcaTCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCcctgc                                                                                      <  1:257983/140‑1 (MQ=255)
                                                  agcaTCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCcctgc                                                                                      <  1:684539/140‑1 (MQ=255)
                                                  agcaTCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCcctgc                                                                                      <  1:316173/140‑1 (MQ=255)
                                                   gcaTCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCcctgcc                                                                                     >  2:284726/1‑140 (MQ=255)
                                                   gcaTCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCcctgcc                                                                                     <  2:1299676/140‑1 (MQ=255)
                                                   gcaTCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCcctgcc                                                                                     <  1:1591087/140‑1 (MQ=255)
                                                   gcaTCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCcctgcc                                                                                     <  2:1686786/140‑1 (MQ=255)
                                                    caTCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCcctgcct                                                                                    <  2:807098/140‑1 (MQ=255)
                                                                 aGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCACGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGGCCCCCCTGCCTGTAATAACTCATg                                                                       <  2:1602148/140‑1 (MQ=255)
                                                                 aGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATg                                                                       <  1:1914977/140‑1 (MQ=255)
                                                                 aGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATg                                                                       <  2:1933897/140‑1 (MQ=255)
                                                                 aGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATg                                                                       <  2:376735/140‑1 (MQ=255)
                                                                  ggcggcGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATgc                                                                      <  1:1552869/140‑1 (MQ=255)
                                                                   gcggcgAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATgct                                                                     >  2:832343/1‑139 (MQ=255)
                                                                   gcggcgAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATgcg                                                                     >  2:1098398/1‑140 (MQ=255)
                                                                   gcggcgAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATgcg                                                                     >  2:2135609/1‑140 (MQ=255)
                                                                    cggcgAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATgcgc                                                                    <  1:832343/140‑1 (MQ=255)
                                                                    aggcgAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGTGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATgcgc                                                                    <  2:1638376/139‑1 (MQ=255)
                                                                       cgAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTc                                                                 >  1:1678818/1‑140 (MQ=255)
                                                                       cgAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTc                                                                 >  1:1152272/1‑140 (MQ=255)
                                                                       cgAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTc                                                                 >  1:57962/1‑140 (MQ=255)
                                                                       cgAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTc                                                                 >  2:766197/1‑140 (MQ=255)
                                                                        gAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTcc                                                                >  1:1206246/1‑140 (MQ=255)
                                                                             tGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACg                                                           >  1:1202812/1‑140 (MQ=255)
                                                                             tGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACg                                                           >  1:1361484/1‑140 (MQ=255)
                                                                                       ctcgctGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCt                                                 >  2:1832899/1‑140 (MQ=255)
                                                                                       ctcgctGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCt                                                 >  1:2031505/1‑140 (MQ=255)
                                                                                        tcgctGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTc                                                <  2:441990/140‑1 (MQ=255)
                                                                                            tgtgCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCgcgc                                            <  2:1202812/140‑1 (MQ=255)
                                                                                            tgtgCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCgcgc                                            <  2:259160/140‑1 (MQ=255)
                                                                                                ccTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGa                                        <  1:1397091/140‑1 (MQ=255)
                                                                                                ccTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGa                                        <  2:1361484/140‑1 (MQ=255)
                                                                                                ccTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGa                                        >  1:409350/1‑140 (MQ=255)
                                                                                                ccTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGa                                        <  1:740656/140‑1 (MQ=255)
                                                                                                   gATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAata                                     <  1:2135609/140‑1 (MQ=255)
                                                                                                   gATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAata                                     <  1:689450/140‑1 (MQ=255)
                                                                                                    aTGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAatat                                    >  1:320266/1‑140 (MQ=255)
                                                                                                       cGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCa                                 <  1:1791185/140‑1 (MQ=255)
                                                                                                          atgcatgcCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAAt                              >  2:1661684/1‑140 (MQ=255)
                                                                                                          atgcatgcCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAAt                              >  2:17148/1‑140 (MQ=255)
                                                                                                          atgcatgcCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAAt                              >  1:1236487/1‑140 (MQ=255)
                                                                                                          atgcatgcCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAAt                              >  2:327311/1‑140 (MQ=255)
                                                                                                          atgcatgcCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAAt                              <  1:766197/140‑1 (MQ=255)
                                                                                                               tgcCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGa                         <  2:1678818/140‑1 (MQ=255)
                                                                                                               tgcCAAGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGa                         >  1:1861994/1‑140 (MQ=255)
                                                                                                                    aGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTg                    >  2:1169176/1‑140 (MQ=255)
                                                                                                                    aGCGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTg                    <  1:93168/140‑1 (MQ=255)
                                                                                                                      cGTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCt                  >  2:1943971/1‑140 (MQ=255)
                                                                                                                       gTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCtt                 >  2:777342/1‑139 (MQ=255)
                                                                                                                       gTGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTg                 <  1:284726/140‑1 (MQ=255)
                                                                                                                        tGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGt                >  2:178270/1‑140 (MQ=255)
                                                                                                                        tGACCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGt                <  2:635552/140‑1 (MQ=255)
                                                                                                                          aCCAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTg              >  2:198034/1‑140 (MQ=255)
                                                                                                                            cAGCGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTGGc            <  1:581718/140‑1 (MQ=255)
                                                                                                                               cGTCTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTGGCata         <  1:777342/140‑1 (MQ=255)
                                                                                                                                  cTTGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTGGCATAttt      <  1:1260355/140‑1 (MQ=255)
                                                                                                                                   ttGCGCCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTGGCATATTTc     >  2:1627907/1‑140 (MQ=255)
                                                                                                                                      cgcCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTGGCATATTTccac  <  1:178270/140‑1 (MQ=255)
                                                                                                                                      agcCCAAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTGGCATATTTccac  <  2:166753/139‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                      
TGGCGCGAGAAATTTGTACGGTATCGGCATGCATTGGGATGAGCTCTCGCAGCATCCGCATATCCAGGCGGCGAAAATGCAGTTGCGCTCGCTGTGCCTGATGCGGATGCATGCCAAGCGTGACCAGCGTCTTGCGCCCCAGCTCTAACGCACTGGAGAATGTTTCACGGGAAAACTGCGTCACCCCTGCCTGTAATAACTCATGCGCTTCCACACGTCCGCGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGTTGGCATATTTCCAC  >  NC_000913/3478891‑3479164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A