Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,486,115 C→A intergenic (‑297/‑5) yhfA ← / → crp OsmC family protein/DNA‑binding transcriptional dual regulator CRP

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,486,1150CA100.0% 704.1 / NA 206intergenic (‑297/‑5)yhfA/crpOsmC family protein/DNA‑binding transcriptional dual regulator CRP
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (110/96);  total (110/96)

Only 100 of 216 total aligned reads displayed.

CTGCATGTATGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTT  >  NC_000913/3485978‑3486251
                                                                                                                                         |                                                                                                                                        
 tGCATGTATGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACagcg                                                                                                                                       >  2:826852/1‑140 (MQ=255)
   cATGTATGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCa                                                                                                                                     <  1:1143272/140‑1 (MQ=255)
   cATGTATGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCa                                                                                                                                     <  1:1971055/140‑1 (MQ=255)
   cATGTATGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCa                                                                                                                                     >  1:5799/1‑140 (MQ=255)
   cATGTATGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCa                                                                                                                                     >  1:1989954/1‑140 (MQ=255)
   cATGTATGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAACCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCa                                                                                                                                     >  2:1189284/1‑140 (MQ=255)
     tGTATGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATg                                                                                                                                   >  1:1648483/1‑140 (MQ=255)
     tGTATGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATg                                                                                                                                   >  2:1640933/1‑140 (MQ=255)
     tGTATGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATg                                                                                                                                   >  2:865047/1‑140 (MQ=255)
     tGTATGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATg                                                                                                                                   >  1:133674/1‑140 (MQ=255)
     tGTATGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATg                                                                                                                                   >  2:1102311/1‑140 (MQ=255)
        aTGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTg                                                                                                                                >  2:93050/1‑140 (MQ=255)
        aTGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTg                                                                                                                                >  1:1155468/1‑140 (MQ=255)
              aGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGc                                                                                                                          >  2:379370/1‑140 (MQ=255)
              aGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGc                                                                                                                          >  1:1110074/1‑140 (MQ=255)
              aGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGc                                                                                                                          <  1:1716559/140‑1 (MQ=255)
               ggACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCa                                                                                                                         <  2:424339/140‑1 (MQ=255)
                gACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCaa                                                                                                                        >  1:1736333/1‑140 (MQ=255)
                 aCGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCaaa                                                                                                                       >  1:1943430/1‑140 (MQ=255)
                   gTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTTGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAAcc                                                                                                                     >  1:1743733/1‑140 (MQ=255)
                       aaTTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCaa                                                                                                                 <  2:20043/139‑1 (MQ=255)
                        aTTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAACCCGCaaa                                                                                                                <  2:1155468/140‑1 (MQ=255)
                        aTTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCaaa                                                                                                                >  1:2111109/1‑140 (MQ=255)
                          tACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACa                                                                                                              >  2:803946/1‑140 (MQ=255)
                              gTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGAcc                                                                                                          <  2:1943430/140‑1 (MQ=255)
                               tGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGAccc                                                                                                         >  2:1838417/1‑140 (MQ=255)
                               tGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGAccc                                                                                                         >  2:324587/1‑140 (MQ=255)
                               tGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGAccc                                                                                                         >  1:1574975/1‑140 (MQ=255)
                               tGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGAccc                                                                                                         >  2:642740/1‑140 (MQ=255)
                               tGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGAccc                                                                                                         >  1:1389865/1‑140 (MQ=255)
                               tGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGAGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGAAAACCGCAAACAGAccc                                                                                                         >  1:224910/1‑140 (MQ=255)
                                 cAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGa                                                                                                       <  2:1894344/140‑1 (MQ=255)
                                 cAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGa                                                                                                       <  2:673722/140‑1 (MQ=255)
                                  aGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGAc                                                                                                      >  1:406759/1‑140 (MQ=255)
                                    tACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGActc                                                                                                    >  1:1897822/1‑140 (MQ=255)
                                    tACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGActc                                                                                                    >  2:2064067/1‑140 (MQ=255)
                                      cAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACtctc                                                                                                  >  1:671639/1‑140 (MQ=255)
                                         ttGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGaa                                                                                               >  2:1585824/1‑140 (MQ=255)
                                         ttGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGaa                                                                                               <  1:828672/140‑1 (MQ=255)
                                         ttGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGaa                                                                                               <  2:267710/140‑1 (MQ=255)
                                         ttGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGaa                                                                                               <  1:1757076/140‑1 (MQ=255)
                                         ttGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGaa                                                                                               <  1:1983879/140‑1 (MQ=255)
                                            aTAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGGGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATgt                                                                                            >  2:753428/1‑139 (MQ=255)
                                             tAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGt                                                                                           >  2:2118311/1‑140 (MQ=255)
                                              aGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAATCCGCAAACAGACCCGACTCTCGAATGGtt                                                                                          >  1:86557/1‑140 (MQ=255)
                                              aGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGtt                                                                                          >  1:137724/1‑140 (MQ=255)
                                                   cTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGt                                                                                     >  2:1850448/1‑140 (MQ=255)
                                                    ttCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAACCCGCAAACAGACCCGACTCTCGAATGGTTCTTGtc                                                                                    <  2:1422811/140‑1 (MQ=255)
                                                     tCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGtct                                                                                   >  1:907908/1‑140 (MQ=255)
                                                           gTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGc                                                                             >  2:1625153/1‑140 (MQ=255)
                                                            tAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGcc                                                                            <  1:389938/140‑1 (MQ=255)
                                                            tAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCGGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAACCCGCAAACAGGCCCGACTCTCGAATGGTTCTTGTCTCATTGcc                                                                            <  2:1106966/140‑1 (MQ=255)
                                                             aGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCca                                                                           <  1:644838/140‑1 (MQ=255)
                                                              gCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCcac                                                                          >  2:719628/1‑140 (MQ=255)
                                                               ggggAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCcaca                                                                         <  2:1039457/139‑1 (MQ=255)
                                                               cGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCcaca                                                                         <  2:213014/140‑1 (MQ=255)
                                                               cGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCcaca                                                                         >  2:1968087/1‑140 (MQ=255)
                                                               cGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCcaca                                                                         >  1:2128530/1‑140 (MQ=255)
                                                               cGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCcaca                                                                         <  2:1440730/140‑1 (MQ=255)
                                                                gggAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACAt                                                                        >  2:1981400/1‑140 (MQ=255)
                                                                gggAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACAt                                                                        <  2:907908/140‑1 (MQ=255)
                                                                gggAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACAt                                                                        >  1:2050336/1‑140 (MQ=255)
                                                                    aGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCAt                                                                    >  1:554469/1‑140 (MQ=255)
                                                                    aGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCAt                                                                    <  1:803946/140‑1 (MQ=255)
                                                                    aGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCAt                                                                    >  1:1447461/1‑140 (MQ=255)
                                                                       atatTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAg                                                                 <  2:5799/140‑1 (MQ=255)
                                                                        tatTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGCCCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGt                                                                <  1:1669973/140‑1 (MQ=255)
                                                                         atTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTa                                                               >  1:1673903/1‑140 (MQ=255)
                                                                          tttCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTAc                                                              <  1:7324/140‑1 (MQ=255)
                                                                          tttCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTAc                                                              <  1:1850448/140‑1 (MQ=255)
                                                                             cGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCa                                                           >  2:236387/1‑140 (MQ=255)
                                                                                cAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATcc                                                        >  1:1326481/1‑140 (MQ=255)
                                                                                        agaCAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCAc                                                <  1:482268/140‑1 (MQ=255)
                                                                                             gcggcgTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCttt                                           >  2:1168538/1‑139 (MQ=255)
                                                                                             gcggcgTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTa                                           >  1:1020355/1‑140 (MQ=255)
                                                                                              cggcgTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTAt                                          >  2:1060480/1‑140 (MQ=255)
                                                                                              cggcgTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTAt                                          >  1:1431108/1‑140 (MQ=255)
                                                                                                  gTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCAc                                      <  1:2017350/140‑1 (MQ=255)
                                                                                                                   aaaGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGCCCCGACTCTCGAATGGTTCTTGTCTCACTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGa                     <  1:1804621/140‑1 (MQ=255)
                                                                                                                   aaaGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGa                     <  1:324587/140‑1 (MQ=255)
                                                                                                                     aGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGaaa                   <  1:1625153/140‑1 (MQ=255)
                                                                                                                     aGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGaaa                   <  1:1168538/140‑1 (MQ=255)
                                                                                                                     aGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGaaa                   <  1:1968087/140‑1 (MQ=255)
                                                                                                                     aGCTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGaaa                   >  2:1251878/1‑140 (MQ=255)
                                                                                                                       cTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACg                 <  1:1609608/140‑1 (MQ=255)
                                                                                                                       cTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACg                 <  2:478697/140‑1 (MQ=255)
                                                                                                                       cTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACg                 <  1:1251878/140‑1 (MQ=255)
                                                                                                                       cTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACg                 <  2:1388610/140‑1 (MQ=255)
                                                                                                                       cTTATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACg                 <  2:132669/140‑1 (MQ=255)
                                                                                                                       attATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACg                 <  2:1680077/139‑1 (MQ=255)
                                                                                                                       attATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACg                 <  2:1875436/139‑1 (MQ=255)
                                                                                                                        ttATAACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGc                <  1:379370/140‑1 (MQ=255)
                                                                                                                         tataACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCt               <  1:288826/140‑1 (MQ=255)
                                                                                                                          ataACAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTg              >  1:1891037/1‑140 (MQ=255)
                                                                                                                            aaCAGAGGATAACAGCGCATGGTGCTTGGAAAAGGGCAACCAGACCCGACTCTCGACTGGTTCTTGTCTCATTGCCTCATTATTAAGTACCCATCCAACAGCTCGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGta            <  2:1431108/140‑1 (MQ=255)
                                                                                                                            aaCAGAGGATAAAAGCGCATGGTGCTTGGAAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGta            <  2:1306588/140‑1 (MQ=255)
                                                                                                                              cAGAGGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGtact          <  1:236387/140‑1 (MQ=255)
                                                                                                                                gagGATAACAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCgg                      >  1:1081564/1‑126 (MQ=255)
                                                                                                                                 agGATAACAGCGAATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACa       <  2:1736333/140‑1 (MQ=255)
                                                                                                                                      aaCAGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGtt  >  2:1495835/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                        
CTGCATGTATGCAAAGGACGTCACATTACCGTGCAGTACAGTTGATAGCCCCTTCCCAGGTAGCGGGAAGCATATTTCGGCAATCCAGAGACAGCGGCGTTATCTGGCTCTGGAGAAAGCTTATAACAGAGGATAACCGCGCATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTT  >  NC_000913/3485978‑3486251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A