Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,592,763 C→A L225L (CTG→CTT)  livF ← branched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,592,7630CA100.0% 436.0 / NA 126L225L (CTG→CTT) livFbranched chain amino acid/phenylalanine ABC transporter ATP binding subunit LivF
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (68/58);  total (68/58)

Only 100 of 134 total aligned reads displayed.

CTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCCAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCCCCTGCTCGCGCAGCTGCTCG  >  NC_000913/3592626‑3592898
                                                                                                                                         |                                                                                                                                       
cTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCaag                                                                                                                                       >  1:2008096/1‑140 (MQ=255)
 tCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCaagc                                                                                                                                      <  2:1092815/140‑1 (MQ=255)
 tCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCaagc                                                                                                                                      >  1:2126389/1‑140 (MQ=255)
   aCCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCaagcag                                                                                                                                    <  1:89413/140‑1 (MQ=255)
   aCCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCaagcag                                                                                                                                    <  2:777458/140‑1 (MQ=255)
   aCCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCaagcag                                                                                                                                    <  1:1629197/140‑1 (MQ=255)
    cccAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAagcagc                                                                                                                                   <  1:75609/140‑1 (MQ=255)
      cAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAgcgc                                                                                                                                 <  2:1879610/140‑1 (MQ=255)
           ggCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCAc                                                                                                                            <  2:1448532/140‑1 (MQ=255)
           ggCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCAc                                                                                                                            <  1:632609/140‑1 (MQ=255)
            gCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCCCTTCTCACCGCTTCATTCGCAAGCAgcg                                                                                                                                  <  1:2137304/133‑1 (MQ=255)
            gCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAgcg                                                                                                                                  >  2:2137304/1‑133 (MQ=255)
              cTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAg                                                                                                                         <  1:1000117/140‑1 (MQ=255)
               tGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGt                                                                                                                        >  1:1298571/1‑140 (MQ=255)
               tGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGt                                                                                                                        >  1:156729/1‑140 (MQ=255)
                gATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTa                                                                                                                       <  1:394824/140‑1 (MQ=255)
                 aTAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTAt                                                                                                                      >  1:1163689/1‑140 (MQ=255)
                   aaGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCg                                                                                                                    >  1:1510773/1‑140 (MQ=255)
                   aaGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCg                                                                                                                    <  2:2008096/140‑1 (MQ=255)
                        cagcgcaTCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAg                                                                                                               <  1:1891710/140‑1 (MQ=255)
                        aagcgcaTCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAg                                                                                                               <  2:77376/139‑1 (MQ=255)
                               acAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACa                                                                                                        <  2:1766773/139‑1 (MQ=255)
                                cAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACAt                                                                                                       <  1:959513/140‑1 (MQ=255)
                                cAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACAt                                                                                                       >  2:682788/1‑140 (MQ=255)
                                  ggCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATgg                                                                                                     <  1:747569/140‑1 (MQ=255)
                                     aaTTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGcct                                                                                                  >  2:301714/1‑139 (MQ=255)
                                            cATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCa                                                                                           <  1:682788/140‑1 (MQ=255)
                                                 gTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACg                                                                                      <  2:508135/140‑1 (MQ=255)
                                                 gTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACg                                                                                      <  2:1484186/140‑1 (MQ=255)
                                                    aCCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAg                                                                                   >  2:1962014/1‑140 (MQ=255)
                                                       tGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCcg                                                                                >  1:1158227/1‑140 (MQ=255)
                                                         tctcAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCcgcg                                                                              <  1:700216/140‑1 (MQ=255)
                                                                   gTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGc                                                                    >  1:1077320/1‑140 (MQ=255)
                                                                   gTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGc                                                                    >  2:49003/1‑140 (MQ=255)
                                                                   gTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGc                                                                    >  1:2144614/1‑140 (MQ=255)
                                                                   gTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGc                                                                    >  1:1107123/1‑140 (MQ=255)
                                                                   gTCCTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAgt                                                                    >  2:191875/1‑139 (MQ=255)
                                                                    tCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCt                                                                   >  1:104788/1‑140 (MQ=255)
                                                                    tCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCt                                                                   <  2:1449454/140‑1 (MQ=255)
                                                                    tCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCt                                                                   >  2:364891/1‑140 (MQ=255)
                                                                    tCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCt                                                                   >  1:61229/1‑140 (MQ=255)
                                                                    tCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCt                                                                   >  2:1686847/1‑140 (MQ=255)
                                                                    tCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCt                                                                   >  1:13738/1‑140 (MQ=255)
                                                                    tCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCt                                                                   >  2:1895574/1‑140 (MQ=255)
                                                                     cTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCtt                                                                  <  2:2117703/140‑1 (MQ=255)
                                                                      ttttGACTCCCTATCAATCAACGTGTTATAACCCGCCTAAATACGCACTTCTCACCACTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCttt                                                                 >  1:1901734/1‑140 (MQ=255)
                                                                         tGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAgc                                                              >  2:422750/1‑140 (MQ=255)
                                                                           aCTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAgcgc                                                            <  1:1103517/140‑1 (MQ=255)
                                                                            cTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGcc                                                           <  1:931690/140‑1 (MQ=255)
                                                                                cTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGt                                                       >  2:304744/1‑140 (MQ=255)
                                                                                  atcaatcaACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTg                                                     >  2:1661201/1‑140 (MQ=255)
                                                                                  atcaatcaACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTg                                                     >  2:479946/1‑140 (MQ=255)
                                                                                     aatcaaCGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCg                                                  <  1:1031639/140‑1 (MQ=255)
                                                                                     aatcaaCGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCg                                                  <  1:191875/140‑1 (MQ=255)
                                                                                      atcaaCGTGTTATTCCCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGt                                                 <  1:1686847/140‑1 (MQ=255)
                                                                                         aaCGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCt                                              >  1:1064918/1‑140 (MQ=255)
                                                                                         aaCGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCt                                              >  1:490809/1‑140 (MQ=255)
                                                                                         aaCGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCt                                              >  2:295308/1‑140 (MQ=255)
                                                                                         aaCGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGGTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCt                                              >  2:1125843/1‑140 (MQ=255)
                                                                                            gtgtTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCt                                           <  2:1077320/140‑1 (MQ=255)
                                                                                              gtTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTcg                                         <  1:295308/140‑1 (MQ=255)
                                                                                                tattaCCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTcgac                                       <  1:732960/140‑1 (MQ=255)
                                                                                                 attaCCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTcgacg                                      >  2:1070212/1‑140 (MQ=255)
                                                                                                 attaCCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTcgacg                                      <  2:1298571/140‑1 (MQ=255)
                                                                                                   taCCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACgag                                    <  1:290594/140‑1 (MQ=255)
                                                                                                    aCCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACgaga                                   >  2:663839/1‑140 (MQ=255)
                                                                                                    aCCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGCAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACgaga                                   >  1:2018201/1‑140 (MQ=255)
                                                                                                       cGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAg                                >  1:1602607/1‑140 (MQ=255)
                                                                                                       cGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAg                                <  1:663839/140‑1 (MQ=255)
                                                                                                       cGCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAg                                >  2:2128485/1‑140 (MQ=255)
                                                                                                        gCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGa                               <  2:2144614/140‑1 (MQ=255)
                                                                                                        gCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGa                               <  1:422750/140‑1 (MQ=255)
                                                                                                        gCCTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGa                               <  2:1163689/140‑1 (MQ=255)
                                                                                                         cttAAATTCGCACTTCTCACCGCTTCATTGGTAAGTAGCGCCTCACCAGTATCGGAAAGCACTACTTGGTCGTTTTCCAGCACGTAGCTGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGCCGCGCAAGAt                              >  2:619563/3‑140 (MQ=255)
                                                                                                         ccTAAATACGCACTTCTCATCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGAt                              >  2:1394265/1‑140 (MQ=255)
                                                                                                         ccTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGAt                              >  1:1828417/1‑140 (MQ=255)
                                                                                                         ccTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGAt                              >  1:2083347/1‑140 (MQ=255)
                                                                                                          cTAAATACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATa                             >  2:1548099/1‑140 (MQ=255)
                                                                                                            aaaTACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACTTGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGt                           <  1:297173/140‑1 (MQ=255)
                                                                                                            aaaTACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGt                           <  2:1064918/140‑1 (MQ=255)
                                                                                                            aaaTACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGt                           <  2:1602607/140‑1 (MQ=255)
                                                                                                            aaaTACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGt                           <  2:1142644/140‑1 (MQ=255)
                                                                                                            aaaTACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGt                           <  2:627748/140‑1 (MQ=255)
                                                                                                            aaaTACGCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGt                           <  1:1634869/140‑1 (MQ=255)
                                                                                                                  gCACTTCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATccc                     >  2:774379/1‑140 (MQ=255)
                                                                                                                      ttCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCCCCTGc                 >  2:925037/1‑140 (MQ=255)
                                                                                                                      ttCTCACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCCCCTGc                 <  2:1828417/140‑1 (MQ=255)
                                                                                                                        ctcACCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCCCCTGCTc               >  2:2074745/1‑140 (MQ=255)
                                                                                                                           atcGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCCCCTGCTcgcg            <  1:1394265/138‑1 (MQ=255)
                                                                                                                           aCCGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCCCCTGCTcgcg            >  2:903440/1‑140 (MQ=255)
                                                                                                                            ccGCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCCCCTGCTCgcgc           <  1:1655198/140‑1 (MQ=255)
                                                                                                                              gCTTCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCCCCTGCTCGCGCAg         <  1:774379/140‑1 (MQ=255)
                                                                                                                                ttCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCCCCTGCTCGCGCAgct       >  1:61690/1‑140 (MQ=255)
                                                                                                                                ttCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCCCCTGCTCGCGCAgct       >  1:1207205/1‑140 (MQ=255)
                                                                                                                                ttCATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCCCCTGCTCGCGCAgct       >  2:1271310/1‑140 (MQ=255)
                                                                                                                                  cATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCCCCTGCTCGCGCAgctgc     >  1:1692633/1‑140 (MQ=255)
                                                                                                                                  cATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCCCCTGCTCGCGCAgctgc     >  1:1078913/1‑140 (MQ=255)
                                                                                                                                  cATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCCCCTGCTCGCGCAgctgc     >  1:455746/1‑140 (MQ=255)
                                                                                                                                  cATTCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCCCCTGCTCGCGCAgctgc     >  2:1956191/1‑140 (MQ=255)
                                                                                                                                     tCGCAAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCCCCTGCTCGCGCAGCTGCTCg  <  1:1125843/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCGCCTAAATACGCACTTCTCACCGCTTCATTCGCCAGCAGCGCATCACCAGTATCGGAAAGCACTACATGGCCGTTTTCCAGCACGTAGCCGCGATCCGCCAGCTTTAGCGCCTGGTTGGCGTTCTGCTCGACGAGAAAGATAGTCATCCCCTGCTCGCGCAGCTGCTCG  >  NC_000913/3592626‑3592898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A