Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,617,503 C→A I163I (ATC→ATA)  nikD → Ni(2(+)) ABC transporter ATP binding subunit NikD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,617,5030CA100.0% 333.1 / NA 97I163I (ATC→ATA) nikDNi(2(+)) ABC transporter ATP binding subunit NikD
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (47/50);  total (47/50)

Only 100 of 101 total aligned reads displayed.

CTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGC  >  NC_000913/3617366‑3617637
                                                                                                                                         |                                                                                                                                      
ctTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTATGTGAATCACCGTTTATCATAGc                                                                                                                                      >  1:1052737/1‑140 (MQ=255)
        tGCCATAGAAGCGGTAGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCAACGTTTATCATAGCCGATGAac                                                                                                                              >  2:432292/1‑140 (MQ=255)
           cATAGAAGCGGTGGGGATGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAaccga                                                                                                                           >  2:2049070/1‑140 (MQ=255)
             tAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGTTGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTTCTGTGTGAATCACCGCTTTTCATAGCCGATGAaccgacc                                                                                                                         >  2:492678/1‑140 (MQ=255)
             tAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAaccgacc                                                                                                                         >  2:2124538/1‑140 (MQ=255)
              aGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAaccgacca                                                                                                                        <  2:395472/140‑1 (MQ=255)
               gAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAaccgaccac                                                                                                                       <  1:1280830/140‑1 (MQ=255)
               gAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAaccgaccac                                                                                                                       <  2:805758/140‑1 (MQ=255)
               gAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAaccgaccac                                                                                                                       <  1:1622709/140‑1 (MQ=255)
               aaaGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAaccgaccac                                                                                                                       <  2:641384/139‑1 (MQ=255)
                   gggTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAaccgaccaccgac                                                                                                                   <  2:1125805/139‑1 (MQ=255)
                    ggTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAaccgaccaccgacc                                                                                                                  >  1:104699/1‑140 (MQ=255)
                    ggTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAaccgaccaccgacc                                                                                                                  >  1:1129990/1‑140 (MQ=255)
                    ggTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAaccgaccaccgacc                                                                                                                  >  1:357967/1‑140 (MQ=255)
                      tGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTATGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCtt                                                                                                                <  2:1052737/140‑1 (MQ=255)
                        gggCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGa                                                                                                              >  1:1973038/1‑140 (MQ=255)
                        gggCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGa                                                                                                              <  2:1303431/140‑1 (MQ=255)
                        gggCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGa                                                                                                              <  1:1132185/140‑1 (MQ=255)
                          gCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACg                                                                                                            >  2:1015901/1‑140 (MQ=255)
                           cTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGt                                                                                                           <  2:864456/140‑1 (MQ=255)
                               aaaaCGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTa                                                                                                       >  2:480924/1‑140 (MQ=255)
                                aaaCGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAg                                                                                                      <  1:305412/140‑1 (MQ=255)
                                        cgcgcgTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGgcg                                                                                              <  1:1015901/140‑1 (MQ=255)
                                          cgcgTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGgcgcg                                                                                            <  1:492678/140‑1 (MQ=255)
                                          cgcgTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGgcgcg                                                                                            <  1:634578/140‑1 (MQ=255)
                                              tGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCA‑GTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATcc                                                                                       >  2:217839/1‑140 (MQ=255)
                                                     gCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATc                                                                                 <  2:1827853/140‑1 (MQ=255)
                                                     gCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATc                                                                                 <  1:480924/140‑1 (MQ=255)
                                                       tGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCCCCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATctg                                                                               <  1:920799/140‑1 (MQ=255)
                                                         tACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATctgct                                                                             >  1:1487019/1‑140 (MQ=255)
                                                         tACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATctgct                                                                             >  2:2090519/1‑140 (MQ=255)
                                                         tACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATctgct                                                                             >  1:1845545/1‑140 (MQ=255)
                                                         tACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATctgct                                                                             >  1:645441/1‑140 (MQ=255)
                                                           cccGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTgg                                                                           >  2:1663147/1‑140 (MQ=255)
                                                             cGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGaa                                                                         <  1:482516/140‑1 (MQ=255)
                                                             cGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGaa                                                                         >  1:1263996/1‑140 (MQ=255)
                                                                tCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGc                                                                      >  1:843989/1‑140 (MQ=255)
                                                                tCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGc                                                                      >  2:1632026/1‑140 (MQ=255)
                                                                 cGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCa                                                                     <  2:104699/140‑1 (MQ=255)
                                                                 cGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCa                                                                     <  2:1039030/140‑1 (MQ=255)
                                                                  gagaTGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCAt                                                                    <  1:1507577/140‑1 (MQ=255)
                                                                  gagaTGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCAt                                                                    <  1:2049070/140‑1 (MQ=255)
                                                                  gagaTGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCAt                                                                    <  1:81011/140‑1 (MQ=255)
                                                                   agaTGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCAtt                                                                   >  2:848498/1‑140 (MQ=255)
                                                                   agaTGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCAtt                                                                   >  2:1707494/1‑140 (MQ=255)
                                                                   agaTGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCAtt                                                                   >  1:1865462/1‑140 (MQ=255)
                                                                       gAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATgt                                                               >  2:115504/1‑139 (MQ=255)
                                                                        aGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCa                                                              <  2:670138/140‑1 (MQ=255)
                                                                         gcggcgGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCaa                                                             >  1:1962157/1‑140 (MQ=255)
                                                                          cggcggCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCaaa                                                            >  1:1039632/1‑140 (MQ=255)
                                                                          cggcggCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCaaa                                                            >  2:56619/1‑140 (MQ=255)
                                                                          cggcggCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCaaa                                                            >  1:712267/1‑140 (MQ=255)
                                                                          cggcggCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCaaa                                                            >  1:2040987/1‑140 (MQ=255)
                                                                            gcggcATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCaaaaa                                                          >  1:940978/1‑140 (MQ=255)
                                                                               gcATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTTTCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACaa                                                       <  1:72954/140‑1 (MQ=255)
                                                                                cATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAg                                                      <  2:645441/140‑1 (MQ=255)
                                                                                 aTGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAgc                                                     <  2:843989/140‑1 (MQ=255)
                                                                                  tGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAgcg                                                    >  2:1984750/1‑140 (MQ=255)
                                                                                  tGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAgcg                                                    >  1:1869482/1‑140 (MQ=255)
                                                                                    ttGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGcc                                                  <  2:1263996/140‑1 (MQ=255)
                                                                                       cAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCggg                                               >  2:1108788/1‑140 (MQ=255)
                                                                                         gcgcATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGaa                                             >  2:2067364/1‑140 (MQ=255)
                                                                                         gcgcATGATGATTGCGATGGAGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGaa                                             <  1:432292/140‑1 (MQ=255)
                                                                                         acgcATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGaa                                             <  2:712267/139‑1 (MQ=255)
                                                                                            cATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAAtgt                                          >  2:1747839/1‑139 (MQ=255)
                                                                                            cATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAAtgc                                          <  2:1039632/140‑1 (MQ=255)
                                                                                              tgatgaTTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAAtgctg                                        >  2:403862/1‑140 (MQ=255)
                                                                                              tgatgaTTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAAtgctg                                        <  1:2124538/140‑1 (MQ=255)
                                                                                               gatgatTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAAtgctgc                                       >  1:1440076/1‑140 (MQ=255)
                                                                                               gatgatTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCCACCTTGACGTGGTAGCACAGGCTCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAAtgctgc                                       >  2:1904735/1‑140 (MQ=255)
                                                                                                  gatTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTgg                                    <  1:2090519/140‑1 (MQ=255)
                                                                                                  gatTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTgg                                    <  2:940978/140‑1 (MQ=255)
                                                                                                   atTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGt                                   <  1:1904735/140‑1 (MQ=255)
                                                                                                   atTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGt                                   <  2:1022141/140‑1 (MQ=255)
                                                                                                   atTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGt                                   <  2:679080/140‑1 (MQ=255)
                                                                                                   atTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGt                                   <  2:67559/140‑1 (MQ=255)
                                                                                                   atTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGt                                   <  1:1663147/140‑1 (MQ=255)
                                                                                                   atTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGt                                   <  1:726015/140‑1 (MQ=255)
                                                                                                   atTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGt                                   <  2:1845545/140‑1 (MQ=255)
                                                                                                   atTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGt                                   <  2:1962157/140‑1 (MQ=255)
                                                                                                    ttGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTg                                  <  2:1440076/140‑1 (MQ=255)
                                                                                                    ttGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTg                                  >  1:1948229/1‑140 (MQ=255)
                                                                                                    ttGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTg                                  >  1:852954/1‑140 (MQ=255)
                                                                                                      gCGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGAc                                <  2:1487019/140‑1 (MQ=255)
                                                                                                       cGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGAcc                               >  2:1676269/1‑140 (MQ=255)
                                                                                                       cGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGAcc                               <  1:403862/140‑1 (MQ=255)
                                                                                                       cGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGAcc                               <  1:1676269/140‑1 (MQ=255)
                                                                                                       cGATGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGAcc                               >  1:946221/1‑140 (MQ=255)
                                                                                                         aTGGCGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCa                             <  1:214861/140‑1 (MQ=255)
                                                                                                             gggTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGat                         <  1:848498/139‑1 (MQ=255)
                                                                                                             cGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGat                         >  2:1246119/1‑140 (MQ=255)
                                                                                                             cGGTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGat                         >  1:619497/1‑140 (MQ=255)
                                                                                                             cGGCGCTGTGGGAATCACCGTTTATCATAGCCGATGAACCGACCCCCGACCTTGACGTGGTAGCACAGGCGCGCATTCTCGCTCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCCGGTGACCCATGat                         >  2:1605652/1‑140 (MQ=255)
                                                                                                               gTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGatat                       <  2:1948229/140‑1 (MQ=255)
                                                                                                               gTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGatat                       <  2:852954/140‑1 (MQ=255)
                                                                                                               gTGCTGTGTGAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGatat                       >  2:200002/1‑140 (MQ=255)
                                                                                                                       tgAATCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTtg               >  1:1488820/1‑140 (MQ=255)
                                                                                                                          aTCACCGTTTATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTgg            >  1:1928047/1‑140 (MQ=255)
                                                                                                                                   tATCATAGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTgg   >  1:70602/1‑140 (MQ=255)
                                                                                                                                    atcataGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGc  <  1:115504/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                      
CTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGC  >  NC_000913/3617366‑3617637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A