Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,897,131	G→T	G120C (GGC→TGC)	yieH →	6‑phosphogluconate phosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,897,131	0	G	T	100.0%	462.3 / NA	133	G120C (GGC→TGC)	yieH	6‑phosphogluconate phosphatase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (58/75); total (58/75)

Only 100 of 133 total aligned reads displayed.

TTTACCGTGCAGAAGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGGGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGAATGTAAATGTAGAAAACTGCATTCTGGT  >  NC_000913/3896994‑3897267

tttACCGTGCAGAAGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGc                                                                                                                                        >  2:36284/1‑140 (MQ=255)

tttACCGTGCAGAAGTAGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGc                                                                                                                                        <  2:1695669/140‑1 (MQ=255)

 ttACCGTGCAGAAGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCa                                                                                                                                       <  1:931175/140‑1 (MQ=255)

  tACCGTGCAGAAGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCaa                                                                                                                                      <  1:299340/140‑1 (MQ=255)

   aCCGTGCAGAAGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAg                                                                                                                                     <  1:1946461/140‑1 (MQ=255)

       tGCAGAAGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGa                                                                                                                                 <  1:215101/140‑1 (MQ=255)

       tGCAGAAGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGa                                                                                                                                 <  1:1271980/140‑1 (MQ=255)

       tGCAGAAGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGa                                                                                                                                 <  1:36284/140‑1 (MQ=255)

       tGCAGAAGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGa                                                                                                                                 <  2:1821652/140‑1 (MQ=255)

       tGCAGAAGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGa                                                                                                                                 <  1:1869135/140‑1 (MQ=255)

         cAGAAGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAat                                                                                                                               >  1:2079535/1‑140 (MQ=255)

         cAGAAGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAat                                                                                                                               >  1:1258596/1‑140 (MQ=255)

         cAGAAGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAat                                                                                                                               >  1:1483125/1‑140 (MQ=255)

          aGAAGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAata                                                                                                                              <  1:1021238/140‑1 (MQ=255)

          aGAAGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAata                                                                                                                              <  1:414664/140‑1 (MQ=255)

            aaGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATg                                                                                                                            <  2:1417875/140‑1 (MQ=255)

            aaGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATg                                                                                                                            <  1:1459522/140‑1 (MQ=255)

            aaGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATg                                                                                                                            <  2:2079535/140‑1 (MQ=255)

            aaGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATg                                                                                                                            <  1:2058584/140‑1 (MQ=255)

            aaGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCAGAATATg                                                                                                                            <  1:1943034/140‑1 (MQ=255)

              gTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGtt                                                                                                                          >  1:175677/1‑140 (MQ=255)

                 gCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGc                                                                                                                                        >  1:1783549/1‑123 (MQ=255)

                 gCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGc                                                                                                                                        <  2:1783549/123‑1 (MQ=255)

                       cTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACtt                                                                                                                 <  1:427255/140‑1 (MQ=255)

                        agTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTc                                                                                                                <  2:541499/139‑1 (MQ=255)

                              aTTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGAt                                                                                                          <  1:882301/140‑1 (MQ=255)

                              aTTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGAt                                                                                                          <  1:275462/140‑1 (MQ=255)

                               ttCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATa                                                                                                         >  2:38922/1‑140 (MQ=255)

                                 cAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATaaa                                                                                                       >  2:1206942/1‑140 (MQ=255)

                                    aaCTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTg                                                                                                    >  2:979472/1‑140 (MQ=255)

                                        ggAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCa                                                                                                <  1:1889987/140‑1 (MQ=255)

                                         gAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCat                                                                                               >  2:613982/1‑139 (MQ=255)

                                         gAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAg                                                                                               >  2:797539/1‑140 (MQ=255)

                                         gAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAg                                                                                               >  2:1289286/1‑140 (MQ=255)

                                         gAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAg                                                                                               >  2:2121315/1‑140 (MQ=255)

                                         gAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAg                                                                                               >  2:2101123/1‑140 (MQ=255)

                                         gAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAg                                                                                               >  2:2013102/1‑140 (MQ=255)

                                          aaGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGc                                                                                              <  1:611421/140‑1 (MQ=255)

                                            gCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCgg                                                                                            <  2:306318/140‑1 (MQ=255)

                                            gCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCgg                                                                                            <  2:1405095/140‑1 (MQ=255)

                                            gCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCgg                                                                                            <  2:1451079/140‑1 (MQ=255)

                                            gCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCgg                                                                                            <  1:2076604/140‑1 (MQ=255)

                                            gCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCgg                                                                                            <  2:1873358/140‑1 (MQ=255)

                                            gCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCgg                                                                                            <  2:271049/140‑1 (MQ=255)

                                            gCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCgg                                                                                            <  2:710387/140‑1 (MQ=255)

                                              cATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCt                                                                                          >  2:748138/1‑140 (MQ=255)

                                                 cGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTTCTTCCCGGATAAACGGTTCAGCGGCTACg                                                                                       <  2:954744/140‑1 (MQ=255)

                                                       ggCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTc                                                                                 >  1:1878343/1‑140 (MQ=255)

                                                       ggCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTc                                                                                 >  2:879187/1‑140 (MQ=255)

                                                        gCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCa                                                                                >  1:1914869/1‑140 (MQ=255)

                                                         cTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAg                                                                               <  1:1641269/140‑1 (MQ=255)

                                                         cTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAg                                                                               <  1:214201/140‑1 (MQ=255)

                                                         cTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAg                                                                               <  2:1927588/140‑1 (MQ=255)

                                                          tGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAgc                                                                              >  2:1253578/1‑140 (MQ=255)

                                                                 cTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGaa                                                                       >  2:1750317/1‑140 (MQ=255)

                                                                 cTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGaa                                                                       >  1:236204/1‑140 (MQ=255)

                                                                   ccTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGc                                                                     <  1:797539/140‑1 (MQ=255)

                                                                   ccTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGc                                                                     <  1:1289286/140‑1 (MQ=255)

                                                                         aGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGAcc                                                               <  1:1750317/140‑1 (MQ=255)

                                                                            gATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCgg                                                            <  2:1319408/140‑1 (MQ=255)

                                                                            gATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGAGATGGAAGCCAGACCCgg                                                            <  2:1576825/140‑1 (MQ=255)

                                                                                aCTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGtt                                                        >  1:1861774/1‑140 (MQ=255)

                                                                                aCTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGtt                                                        >  2:1156075/1‑140 (MQ=255)

                                                                                 cTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTa                                                       <  1:1156075/140‑1 (MQ=255)

                                                                                 cTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTa                                                       >  2:88777/1‑140 (MQ=255)

                                                                                 cTGCGCCAATGTGTGTGGCATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTa                                                       >  1:1028481/1‑140 (MQ=255)

                                                                                                 ggTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCaa                                       <  1:160750/140‑1 (MQ=255)

                                                                                                  gTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCaaa                                      <  2:155493/140‑1 (MQ=255)

                                                                                                   tATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCaaaa                                     >  2:796162/1‑140 (MQ=255)

                                                                                                      cTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCg                                  <  2:1656287/140‑1 (MQ=255)

                                                                                                      cTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCg                                  <  1:419119/140‑1 (MQ=255)

                                                                                                      cTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCg                                  >  2:1751863/1‑140 (MQ=255)

                                                                                                      cTAACGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCg                                  >  2:1018332/1‑140 (MQ=255)

                                                                                                        aaCGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGAt                                >  1:1403258/1‑140 (MQ=255)

                                                                                                        aaCGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGAt                                <  1:1018332/140‑1 (MQ=255)

                                                                                                        aaCGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGAt                                >  1:961265/1‑140 (MQ=255)

                                                                                                         aCGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATg                               <  2:238030/140‑1 (MQ=255)

                                                                                                          cGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGag                                >  1:1894373/1‑137 (MQ=255)

                                                                                                          cGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGAt                                <  2:1894373/138‑1 (MQ=255)

                                                                                                          cGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGa                              >  1:958580/1‑140 (MQ=255)

                                                                                                          cGGCCCAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGa                              >  2:532415/1‑140 (MQ=255)

                                                                                                             cccAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCTGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCaa                                       >  2:917935/1‑128 (MQ=255)

                                                                                                             cccAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGaatt                           >  2:1726236/1‑139 (MQ=255)

                                                                                                             cccAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGaatg                           >  1:605784/1‑140 (MQ=255)

                                                                                                             cccAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGaatg                           >  2:901353/1‑140 (MQ=255)

                                                                                                             cccAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGaatg                           <  1:879187/140‑1 (MQ=255)

                                                                                                               cAAATAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGaatgta                         >  1:756096/1‑140 (MQ=255)

                                                                                                                aaaTAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGaatgtaa                        <  2:1042662/140‑1 (MQ=255)

                                                                                                                   tAACAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGaatgtaaatg                     >  1:1585545/1‑140 (MQ=255)

                                                                                                                     aCAAAATGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGaatgtaaatgta                   <  1:185172/140‑1 (MQ=255)

                                                                                                                       aaaaTGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGAATGTAAATGTAGa                 <  1:979472/140‑1 (MQ=255)

                                                                                                                          aTGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGAATGTAAATGTAGaaaa              <  2:890784/140‑1 (MQ=255)

                                                                                                                           tGCAGCATTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGAATGTAAATGTAGAAAAc             >  2:1310387/1‑140 (MQ=255)

                                                                                                                               gcaTTCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGAATGTAAATGTAGAAAACTGCa         <  1:88777/140‑1 (MQ=255)

                                                                                                                                   tCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGAATGTAAATGTAGAAAACTGCATTCt     >  2:23935/1‑140 (MQ=255)

                                                                                                                                   tCTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGAATGTAAATGTAGAAAACTGCATTCt     >  2:1687589/1‑140 (MQ=255)

                                                                                                                                    cTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGAATGTAAATGTAGAAAACTGCATTCTg    <  2:1585545/140‑1 (MQ=255)

                                                                                                                                    cTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGAATGTAAATGTAGAAAACTGCATTCTg    <  1:796162/140‑1 (MQ=255)

                                                                                                                                    cTATGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGAATGTAAATGTAGAAAACTGCATTCTg    <  1:694978/140‑1 (MQ=255)

                                                                                                                                      aTGTGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGAATGTAAATGTAGAAAACTGCATTCTGGt  <  2:756096/140‑1 (MQ=255)

TTTACCGTGCAGAAGTCGCTCGGCTGTTCGATTCAGAACTGGAAGCCATCGAAGGGGCTGGAGCGCTCCTGTCAGCGATCACTGCGCCAATGTGTGTGGTATCTAACGGCCCAAATAACAAAATGCAGCATTCTATGGGCAAGCTGAATATGTTGCACTACTTCCCGGATAAACTGTTCAGCGGCTACGATATTCAGCGCTGGAAGCCAGACCCGGCGTTAATGTTCCATGCGGCAAAAGCGATGAATGTAAATGTAGAAAACTGCATTCTGGT  >  NC_000913/3896994‑3897267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A