Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F48 I1 R1	56	123.4	4244010	99.1%	4205813	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	3,898,164	IS2 (–) +5 bp	coding (143‑147/588 nt)	cbrC →	UPF0167 family colicin E2 tolerance protein CbrC

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3898164 =	0 (0.000)	162 (1.290)	81/278	0.1	100%	coding (143/588 nt)	cbrC	UPF0167 family colicin E2 tolerance protein CbrC
*	?	NC_000913	4498181 =	NA (NA)	162 (1.290)	81/278	0.1	100%	noncoding (1/1331 nt)	IS2	repeat region
*	?	NC_000913	= 3898168	0 (0.000)	145 (1.150)	75/278	0.1	100%	coding (147/588 nt)	cbrC	UPF0167 family colicin E2 tolerance protein CbrC
*	?	NC_000913	= 4499511	NA (NA)	145 (1.150)	75/278	0.1	100%	noncoding (1331/1331 nt)	IS2	repeat region

Only 100 of 162 total aligned reads displayed.

CGGCAAATTCGTCCTCTTCATCATACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3898301‑3898164

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAG  >  NC_000913/4498181‑4498319

CGGCAAATTCGTCCTCTTCATCATACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTTCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTA                                                                                                                                           >  1:474063/1‑140

CGGCAAATTCGTCCTCTTCATCATACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTA                                                                                                                                           >  1:2070577/1‑140

  GCAAATTCGTCCTCTTCATCATACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGA                                                                                                                                         >  2:1069348/1‑140

  GCAAATTCGTCCTCTTCATCATACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGA                                                                                                                                         >  2:542461/1‑140

   CAAATTCGTCCTCTTCATCATACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGAC                                                                                                                                        >  2:158872/1‑140

   CAAATTCGTCCTCTTCATCATACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGAC                                                                                                                                        >  2:1325092/1‑140

   CAAATTCGTCCTCTTCATCATACTCAAATTCAACACCTTCTATGC‑GGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACT                                                                                                                                       >  1:1251372/1‑140

      ATTCGTCCTCTTCATCATACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGG                                                                                                                                     <  1:1366045/140‑1

      ATTCGTCCTCTTCATCATACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGG                                                                                                                                     <  1:1348909/140‑1

         CGTCCTCTTCATCATACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCC                                                                                                                                  <  1:108697/140‑1

         CGTCCTCTTCATCATACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCC                                                                                                                                  <  2:2030187/140‑1

                TTCATCATACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAAT                                                                                                                           >  2:2075905/1‑140

                     CATACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCA                                                                                                                      <  2:272629/140‑1

                     CATACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCA                                                                                                                      <  1:1104357/140‑1

                       TACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGA                                                                                                                    <  1:211085/140‑1

                        ACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGAC                                                                                                                   >  1:2037760/1‑140

                        ACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGAC                                                                                                                   >  2:1445128/1‑140

                          TCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAA                                                                                                                 >  1:703219/1‑140

                          TCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAA                                                                                                                 >  2:491357/1‑140

                          TCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAA                                                                                                                 >  1:653590/1‑140

                          TCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAA                                                                                                                 >  2:253342/1‑140

                            AAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACC                                                                                                               >  2:1507092/1‑140

                              ATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAA                                                                                                             >  1:1168071/1‑140

                               TTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAAT                                                                                                            <  1:1325092/140‑1

                               TTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCACCTGAAACTCCAGACAACCAAT                                                                                                            <  2:1832574/140‑1

                                TCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATA                                                                                                           <  1:176636/140‑1

                                TCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATA                                                                                                           <  2:627805/140‑1

                                TCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATA                                                                                                           <  1:739765/140‑1

                                  AACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATC                                                                                                         <  2:703219/140‑1

                                  AACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATC                                                                                                         <  1:1625490/140‑1

                                   ACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCA                                                                                                        <  1:1664194/140‑1

                                    CACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCAC                                                                                                       <  2:1565911/140‑1

                                    CACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCAC                                                                                                       <  1:1995935/140‑1

                                    CACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCAC                                                                                                       <  2:2047240/140‑1

                                    CACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCAC                                                                                                       >  2:909293/1‑140

                                       CTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTA                                                                                                    <  1:671728/140‑1

                                       CTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTA                                                                                                    >  2:1073427/1‑140

                                         TCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAA                                                                                                  <  2:1967815/140‑1

                                          aTATTCTGGCATCATCCTGAAAACTGCCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAAT                                                                                                 <  2:540947/139‑1

                                          CTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAAT                                                                                                 <  2:1268051/140‑1

                                          CTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAAT                                                                                                 <  1:695323/140‑1

                                          CTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAAT                                                                                                 <  1:1013320/140‑1

                                            ATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAA                                                                                               >  1:2011866/1‑140

                                               CTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTG                                                                                            <  2:653590/140‑1

                                                TGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGA                                                                                           <  1:1798615/140‑1

                                                 GGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAT                                                                                          <  2:459362/140‑1

                                                 GGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAT                                                                                          <  1:253342/140‑1

                                                 GGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAT                                                                                          <  1:849444/140‑1

                                                 GGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAT                                                                                          <  1:1300359/140‑1

                                                 GGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAT                                                                                          <  1:2115411/140‑1

                                                 GGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAT                                                                                          <  2:46654/140‑1

                                                 GGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAT                                                                                          >  1:394477/1‑140

                                                 GGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGAT                                                                                          <  1:297873/140‑1

                                                  GCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATA                                                                                         >  2:1858348/1‑140

                                                  GCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATA                                                                                         <  1:1533538/140‑1

                                                  GCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATA                                                                                         <  1:342094/140‑1

                                                  GCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATA                                                                                         >  2:311434/1‑140

                                                  GCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTG                                                                                            <  1:305304/137‑1

                                                  GCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTG                                                                                            >  2:305304/1‑137

                                                    ATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGT                                                                                       <  1:542461/140‑1

                                                     TCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTC                                                                                      >  2:194357/1‑140

                                                            GAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAC                                                                               <  1:283718/140‑1

                                                            GAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAC                                                                               >  1:1546994/1‑140

                                                             AAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACT                                                                              <  2:1681597/140‑1

                                                             AAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACT                                                                              <  1:1126154/140‑1

                                                              AAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTA                                                                             >  1:800992/1‑140

                                                                  TACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTT                                                                         <  1:1052783/140‑1

                                                                       GCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGA                                                                    <  1:909293/140‑1

                                                                            CTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGT                                                               <  2:1393426/140‑1

                                                                            CTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGT                                                               <  2:1931063/140‑1

                                                                              TTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCA                                                             <  1:1504618/140‑1

                                                                               TTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAT                                                            <  2:1251372/140‑1

                                                                               TTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCAT                                                            <  1:235874/140‑1

                                                                                 CAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTG                                                          <  2:938310/140‑1

                                                                                 CAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTG                                                          <  1:1571325/140‑1

                                                                                    CAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAG                                                       <  1:1073427/140‑1

                                                                                      GCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAA                                                     <  2:1546994/140‑1

                                                                                      GCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAA                                                     <  2:217742/140‑1

                                                                                       CAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAAC                                                    >  2:1632210/1‑140

                                                                                       CAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGT                                                               <  2:1094949/129‑1

                                                                                             CGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGA                                              <  1:1769283/140‑1

                                                                                              GTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGAT                                             <  2:800992/140‑1

                                                                                                CCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTG                                           <  2:1413090/140‑1

                                                                                                  aCAATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGAT                                         <  2:221155/139‑1

                                                                                                    AATACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA                                          <  2:2113942/137‑1

                                                                                                      TACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCT                                     >  2:243411/1‑140

                                                                                                       ACACCACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTGGTCATTGGAGAACAGCTGATTGATGTCTT                                    <  2:1301664/140‑1

                                                                                                            ACGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGC                               <  1:491357/140‑1

                                                                                                             CGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCC                              >  1:107783/1‑140

                                                                                                             CGGACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCC                              >  2:2006865/1‑140

                                                                                                                ACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGA                           >  2:1313022/1‑140

                                                                                                                ACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGA                           >  1:957720/1‑140

                                                                                                                ACAGAGATGTTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGA                           >  1:1429679/1‑140

                                                                                                                         TTCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAG                  >  1:94307/1‑140

                                                                                                                          TCAACTTCATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGA                 <  1:2075905/140‑1

                                                                                                                                  ATCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAC         <  1:1632210/140‑1

                                                                                                                                   TCAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACC        >  2:398057/1‑140

                                                                                                                                    aAACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCA       <  2:1773877/139‑1

                                                                                                                                      ACGCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACA     <  1:1858348/140‑1

                                                                                                                                         CTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAG  >  2:1510724/1‑140

CGGCAAATTCGTCCTCTTCATCATACTCAAATTCAACACCTTCTATGCTGGCATCATCCTGAAAACTACCTGCAAACTTTTCAGCAGCAGAACCGTCCGCAATACACCACGGACAGAGATGTTCAACTTCATCAACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3898301‑3898164

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAG  >  NC_000913/4498181‑4498319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A