Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,934,676 G→T G300V (GGC→GTC)  rbsA → ribose ABC transporter ATP binding subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,934,6760GT99.2% 425.0 / ‑4.7 125G300V (GGC→GTC) rbsAribose ABC transporter ATP binding subunit
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base T (57/67);  total (58/67)
Fisher's exact test for biased strand distribution p-value = 4.64e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01

Only 100 of 127 total aligned reads displayed.

GATATCCGCCTGAAAGTCGATAATCTCTGCGGACCTGGCGTTAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCAT  >  NC_000913/3934540‑3934811
                                                                                                                                         |                                                                                                                                       
aatatCCGACTGAAAGTCGATAATCTCTGCGGACCTTGCGTTAACGGTGTCTCTTTTA‑ATTACACCAAAGCGAAATTCTTGGAGTTTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCa                                                                                                                                     <  2:2027282/139‑1 (MQ=255)
 atatCCGCCTGAAAGTCGATAATCTCTGCGGACCTGGCGTTAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCa                                                                                                                                     <  2:1722010/140‑1 (MQ=255)
        ccTGAAAGTCGATAATCTCTGCGGACCTGGCGTTAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACcgc                                                                                                                              >  1:1263881/1‑140 (MQ=255)
         cTGAAAGTCGATAATCTCTGCGGACCTGGCGTTAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACcgcg                                                                                                                             >  1:563334/1‑140 (MQ=255)
          tGAAAGTCGATAATCTCTGCGGACCTGGCGTTAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCgcgc                                                                                                                            >  2:1208689/1‑140 (MQ=255)
          tGAAAGTCGATAATCTCTGCGGACCTGGCGTTAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCgcgc                                                                                                                            >  2:1467724/1‑140 (MQ=255)
              aGTCGATAATCTCTGCGGACCTGGCGTTAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCa                                                                                                                        <  2:171455/140‑1 (MQ=255)
              aGTCGATAATCTCTGCGGACCTGGCGTTAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCa                                                                                                                        <  2:1263881/140‑1 (MQ=255)
                       tctcTGCGGACCTGGCGTTAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACg                                                                                                               <  2:1576732/140‑1 (MQ=255)
                        ctctGCGGACCTGGCGTTAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGt                                                                                                              <  2:2065175/140‑1 (MQ=255)
                           tGCGGACCTGGCGTTAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCAc                                                                                                           >  2:1353346/1‑140 (MQ=255)
                           tGCGGACCTGGCGTTAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGCCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGGTACTTCAc                                                                                                           >  2:2090031/1‑140 (MQ=255)
                             cGGACCTGGCGTTAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCAccc                                                                                                         >  2:1259554/1‑140 (MQ=255)
                                   tGGCGTTAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATg                                                                                                   <  1:1439642/140‑1 (MQ=255)
                                     gCGTTAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATggg                                                                                                 >  1:1272662/1‑140 (MQ=255)
                                         tAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATg                                                                                             <  2:1531297/140‑1 (MQ=255)
                                         tAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATg                                                                                             <  2:4102/140‑1 (MQ=255)
                                         tAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATg                                                                                             <  1:1353346/140‑1 (MQ=255)
                                          aaCGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGa                                                                                            >  2:1754458/1‑140 (MQ=255)
                                          aaCGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGa                                                                                            >  1:144528/1‑140 (MQ=255)
                                            cGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGaat                                                                                          >  2:559724/1‑139 (MQ=255)
                                               tGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCg                                                                                       >  1:1925831/1‑140 (MQ=255)
                                                gTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGt                                                                                      >  1:1842906/1‑140 (MQ=255)
                                                   tctTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTAc                                                                                   <  1:1754458/140‑1 (MQ=255)
                                                   tctTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTAc                                                                                   <  1:1259554/140‑1 (MQ=255)
                                                   tctTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTAc                                                                                   <  2:1116238/140‑1 (MQ=255)
                                                        tactttacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGtt                                                                              >  2:952552/1‑140 (MQ=255)
                                                        tactttacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGtt                                                                              <  1:952552/140‑1 (MQ=255)
                                                        tactttacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGtt                                                                              <  1:1073010/140‑1 (MQ=255)
                                                        tactttacGCAAAGGCGAAACTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGtt                                                                              <  2:428185/140‑1 (MQ=255)
                                                             tacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCAcc                                                                          >  2:233824/1‑140 (MQ=255)
                                                             tacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCAcct                                                                         >  2:706761/1‑139 (MQ=255)
                                                             tacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCAc                                                                           >  1:274711/1‑138 (MQ=255)
                                                             tacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCAc                                                                           <  2:274711/138‑1 (MQ=255)
                                                             tacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCg                                                                         >  1:1649411/1‑140 (MQ=255)
                                                             tacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCg                                                                         >  2:185165/1‑140 (MQ=255)
                                                             tacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCg                                                                         >  2:737374/1‑140 (MQ=255)
                                                             tacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCg                                                                         >  1:1942883/1‑140 (MQ=255)
                                                             tacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCg                                                                         >  1:388709/1‑140 (MQ=255)
                                                              acGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGc                                                                        >  2:1751884/1‑140 (MQ=255)
                                                               cGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGtt                                                                              >  1:673624/1‑133 (MQ=255)
                                                               cGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGtt                                                                              <  2:673624/133‑1 (MQ=255)
                                                               cGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCa                                                                       >  1:6559/1‑140 (MQ=255)
                                                               cGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCa                                                                       >  2:22637/1‑140 (MQ=255)
                                                               cGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCa                                                                       >  2:228589/1‑140 (MQ=255)
                                                               cGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCa                                                                       >  1:2099557/1‑140 (MQ=255)
                                                               cGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCa                                                                       >  2:1045264/1‑140 (MQ=255)
                                                               cGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCa                                                                       >  2:432275/1‑140 (MQ=255)
                                                               cGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCa                                                                       >  1:90384/1‑140 (MQ=255)
                                                                  aaaGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGa                                                                    <  2:1698408/140‑1 (MQ=255)
                                                                  aaaGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGa                                                                    <  1:1467724/140‑1 (MQ=255)
                                                                  aaaGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTAACCGCAGGa                                                                    <  1:1208689/140‑1 (MQ=255)
                                                                       cGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGcc                                                               <  1:737374/140‑1 (MQ=255)
                                                                         aaaTTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTg                                                             >  2:643960/1‑140 (MQ=255)
                                                                              cTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCaaa                                                        <  2:1925831/140‑1 (MQ=255)
                                                                                tGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACg                                                      >  2:1729169/1‑140 (MQ=255)
                                                                                tGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACg                                                      >  1:2004598/1‑140 (MQ=255)
                                                                                 ggCGTCTCTGGTTTGATGGGCGCAGGTCGTACCCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACg                                                      <  1:233824/140‑1 (MQ=255)
                                                                                 ggCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACgg                                                     >  1:1189613/1‑140 (MQ=255)
                                                                                  gCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGc                                                    <  2:1842906/140‑1 (MQ=255)
                                                                                   cGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCa                                                   <  2:542082/140‑1 (MQ=255)
                                                                                   cGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCa                                                   <  2:1942883/140‑1 (MQ=255)
                                                                                   cGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCa                                                   <  2:931176/140‑1 (MQ=255)
                                                                                   cGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCa                                                   <  1:1413519/140‑1 (MQ=255)
                                                                                   cGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCa                                                   <  2:62345/140‑1 (MQ=255)
                                                                                   cGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCa                                                   <  1:559724/140‑1 (MQ=255)
                                                                                   cGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCa                                                   <  1:1880077/140‑1 (MQ=255)
                                                                                   cGTCACTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGGACGACCGCGCACTCGCGGTTGCGGCTCCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAACCGGCa                                                   <  2:1396954/140‑1 (MQ=255)
                                                                                     tctcTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCAtt                                                 <  2:388709/140‑1 (MQ=255)
                                                                                     tctcTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCAtt                                                 <  1:185165/140‑1 (MQ=255)
                                                                                      ctctGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATtg                                                >  1:51426/1‑140 (MQ=255)
                                                                                        ctGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATtgtg                                              <  1:432275/140‑1 (MQ=255)
                                                                                          ggTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGta                                            <  2:894229/140‑1 (MQ=255)
                                                                                          ggTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGta                                            <  1:643960/140‑1 (MQ=255)
                                                                                          ggTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGta                                            <  1:683267/140‑1 (MQ=255)
                                                                                            tttGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGtata                                          <  2:964344/140‑1 (MQ=255)
                                                                                             ttGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTatat                                         <  1:1875035/140‑1 (MQ=255)
                                                                                                aTGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATAtctc                                      >  2:1902669/1‑140 (MQ=255)
                                                                                                 tGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGTATTGTGTATATCTcc                                     >  2:583282/1‑140 (MQ=255)
                                                                                                 tGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTcc                                     >  1:546724/1‑140 (MQ=255)
                                                                                                 tGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTcc                                     >  1:967280/1‑140 (MQ=255)
                                                                                                  gggCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCg                                    <  2:1928170/140‑1 (MQ=255)
                                                                                                     cgcAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGACCTGGCAAACGGCATTGTGTATATCTCCGagt                                 >  2:775125/1‑138 (MQ=255)
                                                                                                     cgcAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGGCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAg                                 >  2:1465308/1‑140 (MQ=255)
                                                                                                           tCGTA‑CCGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTa                           <  2:1319768/140‑1 (MQ=255)
                                                                                                                  cGAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGTATTGTGTATATCTCCGAAGACCGTAAACGTg                     <  1:583282/140‑1 (MQ=255)
                                                                                                                   gAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGa                    <  1:1045264/140‑1 (MQ=255)
                                                                                                                   gAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGa                    <  2:1866866/140‑1 (MQ=255)
                                                                                                                   gAACTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGa                    <  1:22637/140‑1 (MQ=255)
                                                                                                                     aCTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGa                    >  1:466840/1‑138 (MQ=255)
                                                                                                                      cTGATGAAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACgg                 >  1:1332128/1‑140 (MQ=255)
                                                                                                                        gatgaAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGtt               <  2:1332128/140‑1 (MQ=255)
                                                                                                                         atgaAAGTGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGttt              >  1:1601233/1‑140 (MQ=255)
                                                                                                                             aaGTGCTCTACGTCGCACTGCCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAgtg          <  1:1623914/140‑1 (MQ=255)
                                                                                                                              agagCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAgtgt         >  1:1024989/4‑140 (MQ=255)
                                                                                                                                tGCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTg       >  2:1057621/1‑140 (MQ=255)
                                                                                                                                 gCTCTACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTgg      >  2:499260/1‑140 (MQ=255)
                                                                                                                                   tctACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGc    >  1:1485743/1‑140 (MQ=255)
                                                                                                                                     tACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCAt  <  2:1874422/140‑1 (MQ=255)
                                                                                                                                     tACGTCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCAt  <  2:1485743/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
GATATCCGCCTGAAAGTCGATAATCTCTGCGGACCTGGCGTTAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTA‑CCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCAT  >  NC_000913/3934540‑3934811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A