Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,939,909	C→A	S235I (AGC→ATC)	hsrA ←	putative transporter HsrA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,939,909	0	C	A	98.4%	414.2 / ‑1.0	124	S235I (AGC→ATC)	hsrA	putative transporter HsrA
Reads supporting (aligned to +/- strand): ref base C (1/1); new base A (72/50); total (73/51)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 126 total aligned reads displayed.

ACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGCGGTGGT  >  NC_000913/3939773‑3940045

acaGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGTTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATgg                                                                                                                                       >  1:51468/1‑140 (MQ=255)

  aGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTg                                                                                                                                     >  2:1491754/1‑140 (MQ=255)

    ccGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGAc                                                                                                                                   >  2:866830/1‑140 (MQ=255)

     cGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGatgatg                                                                                                                                        >  2:1763878/1‑134 (MQ=255)

       gTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAAt                                                                                                                                >  1:201513/1‑140 (MQ=255)

       gTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAAt                                                                                                                                >  2:368432/1‑140 (MQ=255)

       gTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAAt                                                                                                                                >  2:1583238/1‑140 (MQ=255)

        tCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAAtt                                                                                                                               <  2:1345775/140‑1 (MQ=255)

                                 tACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGa                                                                                                      >  1:1191367/1‑140 (MQ=255)

                                   cGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACa                                                                                                    <  1:1889578/140‑1 (MQ=255)

                                   cGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACa                                                                                                    <  1:596582/140‑1 (MQ=255)

                                      tACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAAtt                                                                                                 >  2:1785442/1‑139 (MQ=255)

                                      tACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATc                                                                                                 >  2:1921152/1‑140 (MQ=255)

                                       aCCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCt                                                                                                <  1:1583238/140‑1 (MQ=255)

                                           aTCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTc                                                                                            >  2:1992913/1‑140 (MQ=255)

                                           aTCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTc                                                                                            >  2:509459/1‑140 (MQ=255)

                                           aTCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTc                                                                                            >  2:941963/1‑140 (MQ=255)

                                            tCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTcc                                                                                           <  1:2077190/140‑1 (MQ=255)

                                            tCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTcc                                                                                           <  1:958578/140‑1 (MQ=255)

                                            tCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTcc                                                                                           <  1:1785442/140‑1 (MQ=255)

                                              gagaAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCTAGCTGGCGACAATCTTTTcccc                                                                                         >  1:1797373/1‑140 (MQ=255)

                                                 aaaGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGaa                                                                                      <  2:1296046/140‑1 (MQ=255)

                                                 aaaGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGaa                                                                                      <  1:1884891/140‑1 (MQ=255)

                                                 aaaGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGaa                                                                                      <  1:1935456/140‑1 (MQ=255)

                                                     tGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGc                                                                                  >  2:1455738/1‑140 (MQ=255)

                                                      gCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGct                                                                                 >  2:1576164/1‑140 (MQ=255)

                                                       cGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGctt                                                                                >  2:1109772/1‑139 (MQ=255)

                                                               aaataaatCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGc                                                                        >  2:1292703/1‑140 (MQ=255)

                                                                    aatCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgag                                                                   >  2:2142757/1‑140 (MQ=255)

                                                                      tCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaa                                                                 <  2:407249/140‑1 (MQ=255)

                                                                      tCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaa                                                                 <  1:1620972/140‑1 (MQ=255)

                                                                          aTGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaagaga                                                             >  2:1183740/1‑140 (MQ=255)

                                                                          aTGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaagaga                                                             >  1:1731105/1‑140 (MQ=255)

                                                                          aTGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaagaga                                                             >  1:1713549/1‑140 (MQ=255)

                                                                           tGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTgagaagagaa                                                            <  2:1191367/140‑1 (MQ=255)

                                                                            gAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAAc                                                           <  1:1576164/140‑1 (MQ=255)

                                                                               aTTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAg                                                        >  1:497640/1‑140 (MQ=255)

                                                                                  aaTGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCt                                                     <  2:95026/140‑1 (MQ=255)

                                                                                   aTGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTg                                                    <  2:531090/140‑1 (MQ=255)

                                                                                    tGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGa                                                   >  2:1429412/1‑140 (MQ=255)

                                                                                          tGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCaa                                             >  1:928707/1‑140 (MQ=255)

                                                                                          tGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCaa                                             >  2:670939/1‑140 (MQ=255)

                                                                                           ggCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCaaa                                            >  2:1488873/1‑140 (MQ=255)

                                                                                            gcgtgcgtCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGTGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAAc                                           <  1:1193625/140‑1 (MQ=255)

                                                                                            gcgtgcgtCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAAc                                           <  2:1201532/140‑1 (MQ=255)

                                                                                             cgtgcgtCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACa                                          >  1:535674/1‑140 (MQ=255)

                                                                                                 cgtcgtGCATGTAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAAc                                           >  1:1808240/1‑135 (MQ=255)

                                                                                                 cgtcgtGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAAc                                           <  2:1808240/135‑1 (MQ=255)

                                                                                                 cgtcgtGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCaa                                      >  2:154539/1‑140 (MQ=255)

                                                                                                 cgtcgtGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCaa                                      >  2:1162016/1‑140 (MQ=255)

                                                                                                     gtGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAg                                  <  1:2046931/140‑1 (MQ=255)

                                                                                                      tGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGc                                 <  1:509459/140‑1 (MQ=255)

                                                                                                      tGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGc                                 >  1:1460553/1‑140 (MQ=255)

                                                                                                      tGCATGGAGAATATAGAGAAGCAGTAACCCGATGATGGGGAAAATTACCGTCAAGGCAATCCATCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAACCAGCAAAAAGc                                 >  1:187001/1‑140 (MQ=255)

                                                                                                          tGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGt                             >  2:1936322/1‑140 (MQ=255)

                                                                                                          tGGAGAATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGt                             <  2:1460553/140‑1 (MQ=255)

                                                                                                             agaATATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGat                          <  1:995431/140‑1 (MQ=255)

                                                                                                               aaTATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGatat                        <  1:1936322/140‑1 (MQ=255)

                                                                                                               aaTATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGatat                        <  1:866830/140‑1 (MQ=255)

                                                                                                               aaTATAGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGatat                        <  1:1429412/140‑1 (MQ=255)

                                                                                                                 tataGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCg                      >  1:2141550/1‑140 (MQ=255)

                                                                                                                 tataGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCg                      >  1:1635145/1‑140 (MQ=255)

                                                                                                                 tataGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCg                      >  2:1901570/1‑140 (MQ=255)

                                                                                                                 tataGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCg                      >  1:1999306/1‑140 (MQ=255)

                                                                                                                 tataGAGAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCg                      >  1:1394134/1‑140 (MQ=255)

                                                                                                                    agagAAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAAt                   <  2:1999306/140‑1 (MQ=255)

                                                                                                                     gagaAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATc                  >  2:362129/1‑140 (MQ=255)

                                                                                                                      agaAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCt                 >  1:1732369/1‑140 (MQ=255)

                                                                                                                      agaAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCt                 >  2:772699/1‑140 (MQ=255)

                                                                                                                       gaAGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTg                >  1:532769/1‑140 (MQ=255)

                                                                                                                        aaGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGc               >  1:906732/1‑140 (MQ=255)

                                                                                                                         aGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcg              >  1:1893511/1‑140 (MQ=255)

                                                                                                                         aGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcg              <  2:1044173/140‑1 (MQ=255)

                                                                                                                         aGCAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcg              >  1:713286/1‑140 (MQ=255)

                                                                                                                           cAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcgtc            >  2:1736524/1‑140 (MQ=255)

                                                                                                                           cAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcgtc            >  2:913931/1‑140 (MQ=255)

                                                                                                                           cAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcgtc            >  1:1243584/1‑140 (MQ=255)

                                                                                                                           cAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcgtc            >  1:1166226/1‑140 (MQ=255)

                                                                                                                           cAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcgtc            >  1:1940778/1‑140 (MQ=255)

                                                                                                                           cAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcgtc            >  2:480045/1‑140 (MQ=255)

                                                                                                                           cAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcgtc            >  1:1729211/1‑140 (MQ=255)

                                                                                                                           cAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcgtc            >  2:324285/1‑140 (MQ=255)

                                                                                                                           cAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcgtc            >  1:504402/1‑140 (MQ=255)

                                                                                                                           cAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcgtc            >  1:178580/1‑140 (MQ=255)

                                                                                                                           cAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcgtc            >  1:2050766/1‑140 (MQ=255)

                                                                                                                           cAGTAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcgtc            >  1:315158/1‑140 (MQ=255)

                                                                                                                           cAGTAACCCGATGAGGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGcgtc            >  2:312028/1‑140 (MQ=255)

                                                                                                                              tAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTg         <  1:1992913/140‑1 (MQ=255)

                                                                                                                              tAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTTAGGCCAGACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTg         >  2:288495/1‑140 (MQ=255)

                                                                                                                              tAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTg         <  2:1243584/140‑1 (MQ=255)

                                                                                                                              tAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTg         <  2:1731105/140‑1 (MQ=255)

                                                                                                                              tAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTg         <  1:247569/140‑1 (MQ=255)

                                                                                                                              tAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTg         <  2:1729211/140‑1 (MQ=255)

                                                                                                                              tAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTg         <  1:1980857/140‑1 (MQ=255)

                                                                                                                              tAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTg         <  1:368432/140‑1 (MQ=255)

                                                                                                                              tAACCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTg         <  2:1940778/140‑1 (MQ=255)

                                                                                                                               aaCCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGc        <  1:1455738/140‑1 (MQ=255)

                                                                                                                               aaCCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGc        <  2:1061678/140‑1 (MQ=255)

                                                                                                                                aCCCGATGATGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGCg       <  1:362129/140‑1 (MQ=255)

                                                                                                                                     atgatgGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGCggtggt  >  2:723565/1‑140 (MQ=255)

ACAGCCGGTCCCCAGACGGGTTGCAATATTGCCTACGATACCGATCGAGAAAGTGCGGGTTTTAAATAAATCTAATGAAATTAATGGGTTTGGCGTGCGTCGTGCATGGAGAATATAGAGAAGCAGTAACCCGATGCTGGTGACAATTACCGTCAAGGCAATCCAGCTGGCGACAATCTTTTCCCCGAATAGCTCTATTCCGCTTGAGAAGAGAACAAGGCTGAGGCCAAACAGCAAAAAGCCAGTGATATCGAATCTGCGTCGTGCGGTGGT  >  NC_000913/3939773‑3940045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A