Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,973,142	C→A	N207K (AAC→AAA)	rffG →	dTDP‑glucose 4,6‑dehydratase 2

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,973,142	0	C	A	100.0%	335.1 / NA	98	N207K (AAC→AAA)	rffG	dTDP‑glucose 4,6‑dehydratase 2
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (44/54); total (44/54)

Only 100 of 109 total aligned reads displayed.

CGTCAAAAGCCAGCAGCGACCATCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCGGGAAAGTCGGTGAAACCTATAATATTGGT  >  NC_000913/3973006‑3973277

cgTCAAAAGCCAGCAGCGACCATCTGGTGCGCGCCTGGCTGCGGACCTATTGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAagcg                                                                                                                                      >  1:1481882/1‑140 (MQ=255)

cgTCAAAAGCCAGCAGCGACCATCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAagct                                                                                                                                      >  2:1716043/1‑139 (MQ=255)

cgTCAAAAGCCAGCAGCGACCATCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAagcg                                                                                                                                      >  1:1082640/1‑140 (MQ=255)

cgTCAAAAGCCAGCAGCGACCATCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAagcg                                                                                                                                      >  1:478036/1‑140 (MQ=255)

cgTCAAAAGCCAGCAGCGACCATCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAagcg                                                                                                                                      >  1:437843/1‑140 (MQ=255)

cgTCAAAAGCCAGCAGCGACCATCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAagcg                                                                                                                                      >  2:1182904/1‑140 (MQ=255)

 gTCAAAAGCCAGCAGCGACCATCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAgcgc                                                                                                                                     >  1:1292298/1‑140 (MQ=255)

   aaaaaGCCAGCAGCGACCATCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTg                                                                                                                                   <  2:1266653/139‑1 (MQ=255)

              agcGACCATCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATc                                                                                                                        <  1:628523/140‑1 (MQ=255)

                cGACCATCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCAC‑‑‑CTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGc                                                                                                                   <  2:1579075/140‑1 (MQ=255)

                   ccATCTGGTGCGCGCCTGGCTGCGGACCTATTGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGc                                                                                                                   <  2:1481882/140‑1 (MQ=255)

                   ccATCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACGAACTGCTCGAATAACTACGGCCCTTACCACTTCCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGc                                                                                                                   <  1:217819/140‑1 (MQ=255)

                   ccATCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAACCTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGc                                                                                                                   <  2:374928/140‑1 (MQ=255)

                   ccATCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGc                                                                                                                   <  2:1665196/140‑1 (MQ=255)

                   ccATCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGc                                                                                                                   <  1:1098048/140‑1 (MQ=255)

                   ccATCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGc                                                                                                                   <  1:908558/140‑1 (MQ=255)

                   ccATCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGc                                                                                                                   <  1:1943117/140‑1 (MQ=255)

                     aTCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCg                                                                                                                 <  2:663899/140‑1 (MQ=255)

                     aTCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCg                                                                                                                 <  2:1858568/140‑1 (MQ=255)

                             cgcgcCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATgg                                                                                                         >  1:1863138/1‑140 (MQ=255)

                                  cTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACg                                                                                                    <  2:49466/140‑1 (MQ=255)

                                    ggCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACggg                                                                                                  >  1:1494035/1‑140 (MQ=255)

                                    ggCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACggg                                                                                                  >  2:721729/1‑140 (MQ=255)

                                            aCCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGGAAAACTCTGCCGGTATATGGCCACGGGCAGCAAAt                                                                                          >  2:322456/1‑140 (MQ=255)

                                              cTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGGAAATTGCTGCCGGTATATGGCGACGGGCCGCAAATcc                                                                                        >  2:1635467/1‑140 (MQ=255)

                                                aTGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGt                                                                                      <  1:1804408/140‑1 (MQ=255)

                                                  ggTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGa                                                                                    <  2:1863138/140‑1 (MQ=255)

                                                     cTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTg                                                                                 >  2:1161200/1‑140 (MQ=255)

                                                      tGCCGACGCTTATCACCAACTGCTCGAATACCTACGGCCATTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTgg                                                                                <  2:729014/140‑1 (MQ=255)

                                                      tGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGTGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTgg                                                                                <  2:1702613/140‑1 (MQ=255)

                                                      tGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTgg                                                                                <  2:1082640/140‑1 (MQ=255)

                                                      tGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTgg                                                                                <  1:227606/140‑1 (MQ=255)

                                                      tGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTgg                                                                                <  2:478036/140‑1 (MQ=255)

                                                      tGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTgg                                                                                >  2:797303/1‑140 (MQ=255)

                                                      tGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTgg                                                                                <  2:490313/140‑1 (MQ=255)

                                                      tGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTgg                                                                                <  1:1545064/140‑1 (MQ=255)

                                                      tGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTgg                                                                                <  1:1306181/140‑1 (MQ=255)

                                                      tGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCACGCTGATGATCCTCAAGGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTgg                                                                                <  2:822041/140‑1 (MQ=255)

                                                       gCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGc                                                                               <  2:380522/140‑1 (MQ=255)

                                                        ccGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCt                                                                              >  2:556073/1‑140 (MQ=255)

                                                        ccGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCt                                                                              >  2:1198889/1‑140 (MQ=255)

                                                        ccGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCt                                                                              >  2:382341/1‑140 (MQ=255)

                                                        ccGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGGATATGGCAACGGGCAGCAAATCCGTGACTGGCt                                                                              >  2:1171009/1‑140 (MQ=255)

                                                        ccGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGGAAATCGCTTCCGGTATATGGCAACGGGCAGCAAATCCGGGACTGGCt                                                                              >  2:375228/1‑140 (MQ=255)

                                                        ccGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGGAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGAccagct                                                                              >  2:1871915/1‑135 (MQ=255)

                                                        ccGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTATCCGGAAAAACTGATCCCGCTGATGATCCTCACAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCt                                                                              <  2:1040818/140‑1 (MQ=255)

                                                          gACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGt                                                                            <  1:382341/140‑1 (MQ=255)

                                                          gACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGt                                                                            <  1:1739124/140‑1 (MQ=255)

                                                          gACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGt                                                                            <  1:1198889/140‑1 (MQ=255)

                                                             gCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTAtg                                                                         <  2:1494035/140‑1 (MQ=255)

                                                                tATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTgg                                                                      <  1:375228/140‑1 (MQ=255)

                                                                        aCTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCAc                                                              >  2:1077151/1‑140 (MQ=255)

                                                                           gCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAAACGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGGCTGGCTGTATGTGGAAGATTACGcc                                                           >  2:1408846/1‑140 (MQ=255)

                                                                            cTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGccc                                                          >  2:651352/1‑140 (MQ=255)

                                                                            atCGAATAACTACGGCCCTTACCGCTTTCCGGAAAAACTGATCCCGCTGATGATCCTCTAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGGAGATCACGccc                                                          <  2:1622428/139‑1 (MQ=255)

                                                                             tCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGTCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGcccc                                                         >  2:1620273/1‑139 (MQ=255)

                                                                             tCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAAACGCTGCCGGTAATTGGCAACGGGCAGCAAAGCCGTGATTTGCTCCATGTGGAAAATCACGcccc                                                         >  2:54420/1‑139 (MQ=255)

                                                                              cGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTgg                                                                      <  2:469129/126‑1 (MQ=255)

                                                                              cGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCcgc                                                        >  2:22146/1‑140 (MQ=255)

                                                                              cGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGGATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTgg                                                                      >  1:469129/1‑126 (MQ=255)

                                                                              cGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATAGCTGCCGGTATATGGCAACGGGCAGCAAATCCCCGACTGGCTGTATGTGGAAGATCACACCcgc                                                        >  2:96441/1‑140 (MQ=255)

                                                                               gAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCcgcg                                                       <  1:1161200/140‑1 (MQ=255)

                                                                               gAATAACTACGCCCCTTACCACTTTCCGAAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCGCGCCcgcg                                                       <  2:1220646/140‑1 (MQ=255)

                                                                                aaTAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCcgcgc                                                      <  1:797303/140‑1 (MQ=255)

                                                                                 aTAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCcgcgcg                                                     <  1:805076/140‑1 (MQ=255)

                                                                                    aCTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAAACGCTGCCGGCATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTg                                                  >  2:201219/1‑140 (MQ=255)

                                                                                      tACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATTACGCCCGCGCGCTGtt                                                >  1:1214478/1‑139 (MQ=255)

                                                                                          gCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGGAAATCGCCGCCGGGATATTGCAACTGGCAACAAATCCGTTGCTCGCGGTGTTTGGTAGGCTACGCCCGCTCGCTGTTTTGc                                            >  2:509011/1‑140 (MQ=255)

                                                                                           cccTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCCGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCg                                           >  2:1848146/1‑140 (MQ=255)

                                                                                           cccTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAAACACTGCCGGTATATGGCAACGGGCAGCAAATCCCGGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGCATTGct                                           >  2:653754/1‑139 (MQ=255)

                                                                                              ttACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTgg                                        >  2:320478/1‑140 (MQ=255)

                                                                                                aCCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCg                                      >  1:1229277/1‑140 (MQ=255)

                                                                                                    cTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGacca                                  <  1:88147/140‑1 (MQ=255)

                                                                                                     tttCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGaccac                                 >  1:1349081/1‑140 (MQ=255)

                                                                                                     tttCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGaccac                                 >  1:1498365/1‑140 (MQ=255)

                                                                                                     tttCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGaccac                                 >  1:1227181/1‑140 (MQ=255)

                                                                                                       tCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCg                               >  1:1578935/1‑140 (MQ=255)

                                                                                                       tCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCg                               >  1:1025729/1‑140 (MQ=255)

                                                                                                       tCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGGATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCg                               >  1:1955737/1‑140 (MQ=255)

                                                                                                       tCCGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGGAAATTGTTTCCGGCATATTGCAACGGGCAGCCAATCCGTGAGTAGCTGTGTTTGGTAGATTACGCCCGCGCGGTGAATTTCGTTGCGTCCACCg                               >  2:1771198/1‑140 (MQ=255)

                                                                                                        ccGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCgg                              >  2:1837610/1‑140 (MQ=255)

                                                                                                        ccGGAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCgg                              <  1:509011/140‑1 (MQ=255)

                                                                                                          ggAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCGGGa                            <  1:22146/140‑1 (MQ=255)

                                                                                                          ggAAAAACTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGGAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACGTGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCGGGa                            >  1:75444/1‑140 (MQ=255)

                                                                                                            aaaaaCTGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCGGGaaa                          <  2:1314120/140‑1 (MQ=255)

                                                                                                                  tGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCGGGAAAGTCGGt                    <  2:1498365/140‑1 (MQ=255)

                                                                                                                  tGATCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCGGGAAAGTCGGt                    <  1:1837610/140‑1 (MQ=255)

                                                                                                                    aTCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCGGGAAAGTCGGTGa                  <  1:651352/140‑1 (MQ=255)

                                                                                                                    aTCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCGGGAAAGTCGGTGa                  <  1:530575/140‑1 (MQ=255)

                                                                                                                    aTCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTATATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCGGGAAAGTCGGTGa                  <  1:1267074/140‑1 (MQ=255)

                                                                                                                     tCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCGGGAAAGTCGGTGaa                 <  1:556073/140‑1 (MQ=255)

                                                                                                                     tCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCGGGAAAGTCGGTGaa                 <  1:1643527/140‑1 (MQ=255)

                                                                                                                     tCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCGGGAAAGTCGGTGaa                 <  1:721729/140‑1 (MQ=255)

                                                                                                                     tCCCGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCGGGAAAGTCGGTGaa                 <  2:1578935/140‑1 (MQ=255)

                                                                                                                     tCCCGCTGATGATCCCGAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGTTGTATTGCGTGGCGACCACCGGGAAAGTCGGTGaa                 <  2:884722/140‑1 (MQ=255)

                                                                                                                       ccGCTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGTGTGGCGACCACCGGGAAAGTCGGTGAAAc               <  1:1077151/140‑1 (MQ=255)

                                                                                                                          cTGATGATCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCGGGAAAGTCGGTGAAACCta            <  2:1394874/140‑1 (MQ=255)

                                                                                                                          cTGATGATCCTCAAAGCGCTGGCGGGTAAAACGCTGCCCGGATATGGCAACGGGCAGCAAATCCGGGACTGGCTGTATGGGGAAAATCACCCCCGCGCGCTGTATTGCCGGGCGACCCCCGGGAAAGTCGGGGAAACCtt            >  2:123791/1‑139 (MQ=255)

                                                                                                                           agacagtCCTCAAAGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCGGGAAAGTCGGTGAAACCtat           <  1:989758/134‑1 (MQ=255)

                                                                                                                                  ccTCAAAGCGCTGGCGGGTAAACAGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAATATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCGGGAAAGTCGGTGAAACCTATAATATtg    <  2:1277492/140‑1 (MQ=255)

CGTCAAAAGCCAGCAGCGACCATCTGGTGCGCGCCTGGCTGCGGACCTATGGTCTGCCGACGCTTATCACCAACTGCTCGAATAACTACGGCCCTTACCACTTTCCGGAAAAACTGATCCCGCTGATGATCCTCAACGCGCTGGCGGGTAAATCGCTGCCGGTATATGGCAACGGGCAGCAAATCCGTGACTGGCTGTATGTGGAAGATCACGCCCGCGCGCTGTATTGCGTGGCGACCACCGGGAAAGTCGGTGAAACCTATAATATTGGT  >  NC_000913/3973006‑3973277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A