Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,007,741 C→A intergenic (+48/‑16) recQ → / → rhtC ATP‑dependent DNA helicase RecQ/L‑threonine exporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,007,7410CA98.0% 334.0 / ‑2.8 102intergenic (+48/‑16)recQ/rhtCATP‑dependent DNA helicase RecQ/L‑threonine exporter
Reads supporting (aligned to +/- strand):  ref base C (1/1);  new base A (54/46);  total (55/47)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 104 total aligned reads displayed.

ACGGCGTTGGGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCCCCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAAAGAAGCGATGATGG  >  NC_000913/4007605‑4007877
                                                                                                                                        |                                                                                                                                        
aCGGCGTTGGGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACcg                                                                                                                                       <  1:363291/140‑1 (MQ=255)
aCGGCGTTGGGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACcg                                                                                                                                       <  2:1917446/140‑1 (MQ=255)
aCGGCGTTGGGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACcg                                                                                                                                       <  1:981954/140‑1 (MQ=255)
 aggCGTTGGGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACcgc                                                                                                                                      <  2:1126532/139‑1 (MQ=255)
   gCGTTGGGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGa                                                                                                                                    >  2:1468269/1‑140 (MQ=255)
    cGTTGGGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAg                                                                                                                                   <  2:818280/140‑1 (MQ=255)
     gTTGGGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACcg                                                                                                                                       <  2:1707998/135‑1 (MQ=255)
     gTTGGGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACcg                                                                                                                                       >  1:1707998/1‑135 (MQ=255)
     gTTGGGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGt                                                                                                                                  >  2:1222533/1‑140 (MQ=255)
     gTTGGGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGt                                                                                                                                  <  1:1468269/140‑1 (MQ=255)
     gTTGGGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGt                                                                                                                                  <  1:895928/140‑1 (MQ=255)
     gTTGGGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGt                                                                                                                                  <  1:1200350/140‑1 (MQ=255)
     gTTGGGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGt                                                                                                                                  <  2:515860/140‑1 (MQ=255)
      ttGGGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGCCTCCGTAAACGTTTCCACCGCGAGTc                                                                                                                                 <  1:1502746/140‑1 (MQ=255)
       tGGGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCa                                                                                                                                <  2:723249/140‑1 (MQ=255)
          gATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAat                                                                                                                             <  1:1222533/140‑1 (MQ=255)
            tGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAatgt                                                                                                                           <  1:1145751/140‑1 (MQ=255)
              cgcAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGt                                                                                                                                  >  1:716870/1‑131 (MQ=255)
              cgcAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGt                                                                                                                                  <  2:716870/131‑1 (MQ=255)
              cgcAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAatgtat                                                                                                                         >  1:307341/1‑140 (MQ=255)
                cAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAatgtatgt                                                                                                                       <  2:577944/140‑1 (MQ=255)
                     tGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATg                                                                                                                  <  2:232363/140‑1 (MQ=255)
                     tGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATg                                                                                                                  <  2:290697/140‑1 (MQ=255)
                                   aaaCCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGt                                                                                                    <  2:437907/140‑1 (MQ=255)
                                       cGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGcc                                                                                                <  1:1505301/140‑1 (MQ=255)
                                        gTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCa                                                                                               <  1:849679/140‑1 (MQ=255)
                                        gTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCa                                                                                               <  1:799361/140‑1 (MQ=255)
                                        gTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCa                                                                                               <  2:911349/140‑1 (MQ=255)
                                        gTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCa                                                                                               <  1:1866748/140‑1 (MQ=255)
                                           tATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATgg                                                                                            >  2:776272/1‑140 (MQ=255)
                                            aTGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTTCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGGCGCCATGGt                                                                                           <  2:1765887/140‑1 (MQ=255)
                                                 gcTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGcaca                                                                                      <  1:408955/140‑1 (MQ=255)
                                                    gATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATtg                                                                                   <  2:2046239/140‑1 (MQ=255)
                                                     aTTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATtgt                                                                                  >  1:1088677/1‑140 (MQ=255)
                                                         gTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGgcg                                                                              <  1:1883840/140‑1 (MQ=255)
                                                         gTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGgcg                                                                              <  1:776272/140‑1 (MQ=255)
                                                         gTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGgcg                                                                              <  2:1559928/140‑1 (MQ=255)
                                                               aTGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTAtt                                                                        >  2:580049/1‑139 (MQ=255)
                                                               aTGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATg                                                                        >  1:1094433/1‑140 (MQ=255)
                                                               aTGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATg                                                                        >  1:624807/1‑140 (MQ=255)
                                                               aTGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATg                                                                        >  1:760656/1‑140 (MQ=255)
                                                                         cGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACAGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTc                                                              >  1:1668310/1‑140 (MQ=255)
                                                                           aTGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTccc                                                            >  1:775645/1‑140 (MQ=255)
                                                                           aTGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTccc                                                            >  2:1639110/1‑140 (MQ=255)
                                                                           aTGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTccc                                                            >  2:18384/1‑140 (MQ=255)
                                                                           aTGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTccc                                                            >  2:1907088/1‑140 (MQ=255)
                                                                           aTGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTccc                                                            >  1:2103030/1‑140 (MQ=255)
                                                                           aTGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTccc                                                            >  2:1144901/1‑140 (MQ=255)
                                                                           aTGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTccc                                                            >  2:1039272/1‑140 (MQ=255)
                                                                            tGACGACGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCCCCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTccct                                                           >  2:560897/1‑139 (MQ=255)
                                                                            tGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCg                                                           >  1:1676232/1‑140 (MQ=255)
                                                                            tGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCg                                                           >  2:852488/1‑140 (MQ=255)
                                                                              aCGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGAt                                                         <  1:1144901/140‑1 (MQ=255)
                                                                                 aaGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTc                                                      >  1:207600/1‑140 (MQ=255)
                                                                                     gtagtCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCtttt                                                  <  1:213761/140‑1 (MQ=255)
                                                                                     gtagtCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCtttt                                                  <  1:580049/140‑1 (MQ=255)
                                                                                     gtagtCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCtttt                                                  <  1:852488/140‑1 (MQ=255)
                                                                                       agtCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCtttttt                                                <  1:573121/140‑1 (MQ=255)
                                                                                        gtCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCttttttt                                               >  2:584625/1‑139 (MQ=255)
                                                                                         tCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGt                                              >  1:1070041/1‑140 (MQ=255)
                                                                                              agcaTAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGtctctc                                         >  2:1236582/1‑140 (MQ=255)
                                                                                              agcaTAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGtctctc                                         >  2:1269660/1‑140 (MQ=255)
                                                                                              agcaTAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGtctctc                                         >  1:987292/1‑140 (MQ=255)
                                                                                              agcaTAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGtctctc                                         >  2:1124521/1‑140 (MQ=255)
                                                                                              agcaTAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGtctctc                                         >  2:1793789/1‑140 (MQ=255)
                                                                                              agcaTAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGtctctc                                         <  1:2081646/140‑1 (MQ=255)
                                                                                                caTAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAg                                       >  1:1827011/1‑140 (MQ=255)
                                                                                                  tAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATCGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGAc                                     >  2:306480/1‑140 (MQ=255)
                                                                                                  aaaaaaaGTGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGAc                                     <  2:207600/139‑1 (MQ=255)
                                                                                                          tGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCa                             >  1:1873216/1‑140 (MQ=255)
                                                                                                          tGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCa                             >  1:1754496/1‑140 (MQ=255)
                                                                                                          tGCCAGTATGAAGACTCCGTAAACGTTTCCACCGCGAGTC‑AATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCat                            >  2:221975/1‑139 (MQ=255)
                                                                                                            ccAGTATGAAGACTCCGTAAACGTTTCCCCCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGt                           <  1:560897/140‑1 (MQ=255)
                                                                                                               gTATGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGt                        <  1:18384/140‑1 (MQ=255)
                                                                                                                 aTGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTc                      <  2:1676232/140‑1 (MQ=255)
                                                                                                                 aTGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTc                      >  2:368274/1‑140 (MQ=255)
                                                                                                                 aTGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTc                      <  1:1771351/140‑1 (MQ=255)
                                                                                                                 aTGAAGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTc                      <  2:1094433/140‑1 (MQ=255)
                                                                                                                    aaGACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCg                   >  1:2123902/1‑140 (MQ=255)
                                                                                                                      gACTCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTa                 <  1:1431586/140‑1 (MQ=255)
                                                                                                                         tCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAaag              >  1:1021520/1‑140 (MQ=255)
                                                                                                                         tCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAaag              >  1:21057/1‑140 (MQ=255)
                                                                                                                         tCCGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAaag              >  1:1810892/1‑140 (MQ=255)
                                                                                                                         tCCGTAAACGTTTCCACAGCTAGTCAAGTGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAaag              <  2:1088677/140‑1 (MQ=255)
                                                                                                                          ccGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATTAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTTTCAGTCGTTCCCGTAaaga             >  2:384099/1‑140 (MQ=255)
                                                                                                                          ccGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAaaga             >  1:612468/1‑140 (MQ=255)
                                                                                                                          ccGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTGCCCGTAaaga             >  1:1123542/1‑140 (MQ=255)
                                                                                                                           cGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAaagaa            >  1:1289348/1‑140 (MQ=255)
                                                                                                                           cGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAaagaa            >  2:1798479/1‑140 (MQ=255)
                                                                                                                           cGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAaagaa            >  1:776405/1‑140 (MQ=255)
                                                                                                                           cGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAaagaa            >  2:1788971/1‑140 (MQ=255)
                                                                                                                           cGTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAaagaa            >  2:1728588/1‑140 (MQ=255)
                                                                                                                            gTAAACGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAaagaag           >  2:123990/1‑140 (MQ=255)
                                                                                                                               aaCGTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAAAGAAGCga        >  2:478844/1‑140 (MQ=255)
                                                                                                                                  gTTTCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAAAGAAGCgatga     <  2:624807/140‑1 (MQ=255)
                                                                                                                                   tttCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGAGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAAAGAAGCgatgat    >  1:751257/1‑140 (MQ=255)
                                                                                                                                     tCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAAAGAAGCGATGATgg  >  1:873221/1‑140 (MQ=255)
                                                                                                                                     tCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAAAGAAGCGATGATgg  <  2:525473/140‑1 (MQ=255)
                                                                                                                                     tCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAAAGAAGCGATGATgg  <  2:775645/140‑1 (MQ=255)
                                                                                                                                     tCCACCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAAAGAAGCGATGATgg  <  2:268545/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
ACGGCGTTGGGATGCGCAAGCTGGAACGCTTTGGCAAACCGTTTATGGCGCTGATTCGTGCGCATGTTGATGGCGATGACGAAGAGTAGTCAGCAGCATAAAAAAGTGCCAGTATGAAGACTCCGTAAACGTTTCCCCCGCGAGTCAAATGTATGTTGATGTTATTTCTCACCGTCGCCATGGTGCACATTGTGGCGCTTATGAGCCCCGGTCCCGATTTCTTTTTTGTCTCTCAGACCGCTGTCAGTCGTTCCCGTAAAGAAGCGATGATGG  >  NC_000913/4007605‑4007877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A