Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,035,811 G→T noncoding (281/1542 nt) rrsA → 16S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,035,8110GT98.9% 210.0 / NA 94noncoding (281/1542 nt)rrsA16S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base T (51/42);  total (52/42)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCT  >  NC_000913/4035675‑4035873
                                                                                                                                        |                                                              
ggggATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATc                                                             >  2:1128535/1‑140 (MQ=17)
ggggATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATc                                                             >  1:1604618/1‑140 (MQ=17)
ggggATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATc                                                             >  2:1371059/1‑140 (MQ=17)
ggggATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATc                                                             >  1:1696900/1‑140 (MQ=17)
    aTAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAAGGGCTCACCTAGGCGACTATCCCtt                                                         >  2:1185784/1‑139 (MQ=12)
    aTAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTa                                                         >  1:2061566/1‑140 (MQ=17)
     tAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGTAAGACCAAAGGGGGGTACCTTGGGGCCTCATGCCCTCCGATGTCCCGCGATTGCATTAGCTAGTAGGTGGGGTAACGGCTCCCCTAGGCGACTTTCCCTAg                                                        <  2:2019706/140‑1 (MQ=11)
     tAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGGCTATCCCTAg                                                        <  2:1517706/140‑1 (MQ=17)
     tAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAg                                                        <  1:1083709/140‑1 (MQ=17)
     aaaCTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAg                                                        <  2:1220198/139‑1 (MQ=17)
      aaCTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATc                                                             <  2:1654154/134‑1 (MQ=17)
      aaCTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATc                                                             >  1:1654154/1‑134 (MQ=17)
       actactGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCt                                                      >  2:1737623/1‑140 (MQ=17)
        atactGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTg                                                     <  2:184347/139‑1 (MQ=17)
          actGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGt                                                   >  2:1158917/1‑140 (MQ=17)
           ctGGAAACGGCAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTc                                                  >  1:1506758/1‑140 (MQ=17)
            tGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCt                                                 >  2:1043710/1‑140 (MQ=17)
            tGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCt                                                 <  1:1957775/140‑1 (MQ=17)
            tGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCt                                                 >  2:1167681/1‑140 (MQ=17)
            tGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCt                                                 >  2:1636047/1‑140 (MQ=17)
             ggAAACTGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTg                                                >  2:774217/1‑140 (MQ=17)
             ggAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTg                                                >  1:834331/1‑140 (MQ=17)
             ggAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTg                                                >  1:717805/1‑140 (MQ=17)
             ggAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTg                                                <  2:995609/140‑1 (MQ=17)
                aaCGGTATCTAATACCGCATAACGTCGCAAGACCAAAGAAGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTgaga                                             >  1:1944459/1‑140 (MQ=12)
                aaCGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTgaga                                             >  1:1468991/1‑140 (MQ=17)
                aaCGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTgaga                                             <  2:1881298/140‑1 (MQ=17)
                aaCGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGAGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTgaga                                             >  1:1476907/1‑140 (MQ=17)
                   ggTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTg                                                <  1:1990275/134‑1 (MQ=17)
                   ggTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTg                                                >  2:1990275/1‑134 (MQ=17)
                   ggTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGa                                          >  2:1401606/1‑140 (MQ=17)
                     tAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGAtt                                        >  2:675278/1‑139 (MQ=17)
                     tAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATg                                        <  2:449369/140‑1 (MQ=17)
                       gCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCTAGATGGGCTTAGCTAGTAGGTGGGGTAACGTCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGAc                                      <  2:1429333/140‑1 (MQ=255)
                           aTACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTTTCCCTAGCTGGTCTGAGAGGATGACCAGc                                  <  1:1904017/140‑1 (MQ=17)
                           aTACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGc                                  <  1:1737623/140‑1 (MQ=17)
                             aCCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCca                                >  1:183619/1‑140 (MQ=17)
                             aCCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCca                                >  2:1788535/1‑140 (MQ=17)
                             aCCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCca                                >  2:2136429/1‑140 (MQ=17)
                             aCCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCca                                >  2:1931109/1‑140 (MQ=17)
                               cGCATGACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCcaca                              >  1:751600/1‑140 (MQ=17)
                               cGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGc                                  <  1:30822/136‑1 (MQ=17)
                               cGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGc                                  >  2:30822/1‑136 (MQ=18)
                                gCATAACGTCGCAAGCCCAAAGAGGGGTACCTTCGGGCCTCTTGGCATCGGATGTGCCCAGATGGGATTAGCTGGTAGGTGGGGTAACCGCTCACCTAGGGGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCacac                             <  2:1969686/140‑1 (MQ=11)
                                 cATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGc                                  <  2:1921604/134‑1 (MQ=17)
                                 cATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGc                                  >  1:860584/1‑134 (MQ=17)
                                 cATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGc                                  <  2:860584/134‑1 (MQ=17)
                                 cATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGc                                  >  1:1921604/1‑134 (MQ=17)
                                 cATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                            >  2:1647004/1‑140 (MQ=18)
                                 cATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                            >  2:160977/1‑140 (MQ=18)
                                 cATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                            >  2:2094344/1‑140 (MQ=17)
                                 cATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                            >  2:1587091/1‑140 (MQ=18)
                                 cATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                            >  2:686081/1‑140 (MQ=17)
                                 cATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                            >  2:134838/1‑140 (MQ=17)
                                 cATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                            >  1:1655824/1‑140 (MQ=17)
                                 cATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                            >  1:1718392/1‑140 (MQ=18)
                                 cATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                            >  2:1397653/1‑140 (MQ=17)
                                 cATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                            >  1:2081745/1‑140 (MQ=17)
                                 cATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACt                            >  2:1311527/1‑140 (MQ=18)
                                  aTAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGTTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTg                           >  2:926554/1‑140 (MQ=17)
                                  aTAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTg                           >  1:294275/1‑140 (MQ=17)
                                  aTAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTg                           >  2:2094253/1‑140 (MQ=17)
                                   tAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTgg                          >  1:1506969/1‑140 (MQ=17)
                                   tAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTgg                          <  2:1468991/140‑1 (MQ=17)
                                   tAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTgg                          <  1:1035034/140‑1 (MQ=17)
                                   aaaCGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTgg                          <  2:805935/139‑1 (MQ=17)
                                   aaaCGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTgg                          <  2:1718392/139‑1 (MQ=17)
                                      cGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAAc                       >  1:1934985/1‑140 (MQ=17)
                                        tCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTg                     >  2:1222448/1‑140 (MQ=17)
                                           cAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTgaga                  >  2:2091520/1‑140 (MQ=17)
                                            aaGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCTCCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGac                 <  1:1931109/140‑1 (MQ=17)
                                            aaGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGac                 <  1:1647004/140‑1 (MQ=17)
                                            aaGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGac                 <  1:1561408/140‑1 (MQ=17)
                                             aGACCAAAGTGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGaca                <  2:294275/140‑1 (MQ=17)
                                             aGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGaca                <  1:926554/140‑1 (MQ=17)
                                             aGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGaca                <  1:1158917/140‑1 (MQ=17)
                                             aGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGaca                <  2:717805/140‑1 (MQ=17)
                                             aGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGaca                <  2:2061566/140‑1 (MQ=17)
                                             aGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGaca                <  1:1158970/140‑1 (MQ=17)
                                             aGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGaca                <  1:223135/140‑1 (MQ=17)
                                             aGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGaca                <  2:265010/140‑1 (MQ=17)
                                             aGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGaca                <  1:2094344/140‑1 (MQ=17)
                                             aGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGaca                <  1:1371059/140‑1 (MQ=17)
                                             aGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGAGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGaca                <  2:1476907/140‑1 (MQ=17)
                                              gACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGacac               <  1:1788535/140‑1 (MQ=17)
                                                ccAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACgg             >  1:1614241/1‑140 (MQ=17)
                                                  aaaGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTc           <  2:2015687/140‑1 (MQ=17)
                                                   aaGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTcc          >  1:1027486/1‑140 (MQ=17)
                                                     gagGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAg        <  2:1696900/140‑1 (MQ=17)
                                                     gagGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAg        <  2:1631262/140‑1 (MQ=17)
                                                     gagGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTATGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAg        <  1:1222448/140‑1 (MQ=17)
                                                      agGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGa       <  1:1128535/140‑1 (MQ=17)
                                                        gggTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACt     >  2:354505/1‑140 (MQ=17)
                                                          gTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTcc   >  2:773729/1‑140 (MQ=14)
                                                          gTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTcc   >  1:1269523/1‑140 (MQ=14)
                                                           tACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACTATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCt  >  1:301149/1‑140 (MQ=11)
                                                                                                                                        |                                                              
GGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCT  >  NC_000913/4035675‑4035873

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A