Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,054,697 C→A A194A (GCG→GCT)  glnG ← DNA‑binding transcriptional dual regulator NtrC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,054,6970CA97.9% 307.3 / ‑1.5 93A194A (GCG→GCT) glnGDNA‑binding transcriptional dual regulator NtrC
Reads supporting (aligned to +/- strand):  ref base C (1/1);  new base A (41/50);  total (42/51)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATGTACCGCCATCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGCGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAACGCGAAAGCCGACCGATAATACGGAACACG  >  NC_000913/4054573‑4054832
                                                                                                                            |                                                                                                                                       
atGTACCGCCATCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCt                                                                                                                          <  2:880569/140‑1 (MQ=255)
atGTACCGCCATCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCt                                                                                                                          <  1:1911083/140‑1 (MQ=255)
     ccGCCATCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGgc                                                                                                                     >  1:832388/1‑140 (MQ=255)
     ccGCCATCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGgc                                                                                                                     >  1:2736/1‑140 (MQ=255)
      cGCCATCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGCGCGATAAACGGCGCTTTGgcg                                                                                                                    >  1:26153/1‑140 (MQ=255)
      cGCCATCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGgcg                                                                                                                    >  2:1752139/1‑140 (MQ=255)
      cGCCATCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGgcg                                                                                                                    >  2:1137304/1‑140 (MQ=255)
      cGCCATCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGgcg                                                                                                                    >  1:1664068/1‑140 (MQ=255)
        ccATCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGgcgcg                                                                                                                  <  1:652558/140‑1 (MQ=255)
        ccATCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGgcgcg                                                                                                                  >  2:1231389/1‑140 (MQ=255)
        ccATCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGgcgcg                                                                                                                  >  2:1817877/1‑140 (MQ=255)
        ccATCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGgcgcg                                                                                                                  >  2:880374/1‑140 (MQ=255)
        ccATCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGgcgcg                                                                                                                  >  2:1467040/1‑140 (MQ=255)
          aTCGGCCTGTTCAAAACGCCCCTGACTAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGTTAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGcgcgcg                                                                                                                <  1:334083/140‑1 (MQ=255)
          aTCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGcgcgcg                                                                                                                <  2:997504/140‑1 (MQ=255)
          aTCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGcgcgcg                                                                                                                <  2:713890/140‑1 (MQ=255)
           tCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGcgcgcg                                                                                                                >  2:1701570/1‑139 (MQ=255)
           tCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGcgcgcg                                                                                                                <  1:1701570/139‑1 (MQ=255)
             ggCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGAc                                                                                                             <  2:1028616/140‑1 (MQ=255)
             ggCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGAc                                                                                                             <  2:843569/140‑1 (MQ=255)
             ggCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGAc                                                                                                             <  2:832388/140‑1 (MQ=255)
                  gTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTgg                                                                                                        <  1:1137304/140‑1 (MQ=255)
                   ttCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGc                                                                                                       >  1:953787/1‑140 (MQ=255)
                   ttCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGc                                                                                                       >  2:2088897/1‑140 (MQ=255)
                       aaaCGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAAAAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGTCTGTGGCGATg                                                                                                   <  1:659275/140‑1 (MQ=255)
                                tGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATg                                                                                          >  2:1058824/1‑140 (MQ=255)
                                 gACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGa                                                                                         <  1:2088897/140‑1 (MQ=255)
                                 gACGAATCGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAACCAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGa                                                                                         <  2:1870735/140‑1 (MQ=255)
                                  aCGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAg                                                                                        >  1:496265/1‑140 (MQ=255)
                                      aTGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGAc                                                                                    <  1:1467040/140‑1 (MQ=255)
                                      aTGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGAc                                                                                    <  2:1365764/140‑1 (MQ=255)
                                      aTGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGAc                                                                                    <  1:891506/140‑1 (MQ=255)
                                       tGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGAcc                                                                                   <  1:2056116/140‑1 (MQ=255)
                                       tGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGAcc                                                                                   >  1:496603/1‑140 (MQ=255)
                                          tATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGt                                                                                >  2:1584038/1‑140 (MQ=255)
                                              cgcgCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATCCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCtt                                                                            >  1:285141/1‑140 (MQ=255)
                                                cgcCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTa                                                                          >  2:617971/1‑140 (MQ=255)
                                                 gcCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTAc                                                                         >  2:177967/1‑140 (MQ=255)
                                                 gcCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTAc                                                                         <  2:671545/140‑1 (MQ=255)
                                                 gcCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTAc                                                                         >  1:677806/1‑140 (MQ=255)
                                                  ccAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTAcc                                                                        >  2:2143222/1‑140 (MQ=255)
                                                    aGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCgg                                                                      >  2:119619/1‑140 (MQ=255)
                                                    aGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCgg                                                                      >  1:1002831/1‑140 (MQ=255)
                                                             gcCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGAtt                                                             <  1:58261/140‑1 (MQ=255)
                                                             gcCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGAtt                                                             >  2:274976/1‑140 (MQ=255)
                                                               cTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTct                                                           >  2:878561/1‑139 (MQ=255)
                                                               cTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCg                                                           >  2:653840/1‑140 (MQ=255)
                                                                  tctcGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCg                                                        <  2:1002831/140‑1 (MQ=255)
                                                                  tctcGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCg                                                        <  2:496603/140‑1 (MQ=255)
                                                                  tctcGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCg                                                        <  2:1278552/140‑1 (MQ=255)
                                                                         gCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCa                                                 <  1:274976/140‑1 (MQ=255)
                                                                         gCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCACTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCa                                                 >  2:1792425/1‑140 (MQ=255)
                                                                          ccAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAg                                                <  1:878561/140‑1 (MQ=255)
                                                                          ccAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAg                                                <  1:1817877/140‑1 (MQ=255)
                                                                          ccAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAg                                                <  2:1664068/140‑1 (MQ=255)
                                                                          ccAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAg                                                <  1:1569650/140‑1 (MQ=255)
                                                                          ccAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAg                                                <  1:653840/140‑1 (MQ=255)
                                                                           cAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGc                                               <  1:989219/140‑1 (MQ=255)
                                                                           cAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGc                                               >  2:989219/1‑140 (MQ=255)
                                                                           cAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGc                                               <  1:1058824/140‑1 (MQ=255)
                                                                             aaCAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCAc                                             <  2:677806/140‑1 (MQ=255)
                                                                             aaCAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCAc                                             <  1:1584038/140‑1 (MQ=255)
                                                                             aaCAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCAc                                             <  1:880374/140‑1 (MQ=255)
                                                                             aaCAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCAc                                             <  1:1752139/140‑1 (MQ=255)
                                                                             aaCAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCAc                                             <  2:567803/140‑1 (MQ=255)
                                                                             aaCAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCAc                                             <  1:2142263/140‑1 (MQ=255)
                                                                               aaGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGc                                           <  2:2736/139‑1 (MQ=255)
                                                                                  ttCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTaa                                        >  1:393254/1‑140 (MQ=255)
                                                                                    cTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATa                                      >  2:1454788/1‑140 (MQ=255)
                                                                                    cTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATa                                      >  1:1539635/1‑140 (MQ=255)
                                                                                    cTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATa                                      >  1:788176/1‑140 (MQ=255)
                                                                                    cTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATa                                      >  1:1860796/1‑140 (MQ=255)
                                                                                       aTTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATagaa                                   >  1:1009534/1‑140 (MQ=255)
                                                                                        ttCGATCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATagaag                                  <  1:1231389/140‑1 (MQ=255)
                                                                                            aTCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCAc                                             <  2:245359/125‑1 (MQ=255)
                                                                                            aTCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCAc                                             >  1:245359/1‑125 (MQ=255)
                                                                                            aTCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAAcg                              >  2:1212581/1‑140 (MQ=255)
                                                                                            aTCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAAcg                              >  1:1239311/1‑140 (MQ=255)
                                                                                            aTCAAATCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAAcg                              >  2:1188698/1‑140 (MQ=255)
                                                                                                 aTCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAACGCGaaa                         >  1:257682/1‑140 (MQ=255)
                                                                                                 aTCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAACGCGaaa                         >  2:596172/1‑140 (MQ=255)
                                                                                                  tCTTTTGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAACGCGAAAg                        <  2:1239311/140‑1 (MQ=255)
                                                                                                     tttGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAACGCGAAAGccg                     <  1:177967/140‑1 (MQ=255)
                                                                                                      ttGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAACGCGAAAGccga                    <  2:1009534/140‑1 (MQ=255)
                                                                                                       tGGGATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAACGCGAAAGccgac                   <  1:1188698/140‑1 (MQ=255)
                                                                                                          gATAGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAACGCGAAAGccgaccga                <  1:596172/140‑1 (MQ=255)
                                                                                                             aGCTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAACGCGAAAGCCGACCGataa             <  1:1249482/140‑1 (MQ=255)
                                                                                                               cggCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTATTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAACGCGAAAGCCGACCGataatt           <  2:1973464/138‑2 (MQ=255)
                                                                                                               cTGCCATATTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAACGCGAAAGCCGACCGataata           >  1:110092/1‑140 (MQ=255)
                                                                                                                  acATATTCAGCGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAACGCGAAAGCCGACCGATAATACgg        <  2:26153/139‑1 (MQ=255)
                                                                                                                   aatatTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAACGCGAAAGCCGACCGATAATACGGa       <  2:721929/139‑1 (MQ=255)
                                                                                                                    atatTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAACGCGAAAGCCGACCGATAATACGGaa      <  2:1003832/140‑1 (MQ=255)
                                                                                                                    atatTCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAACGCGAAAGCCGACCGATAATACGGaa      <  1:1212581/140‑1 (MQ=255)
                                                                                                                        tCAGAGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAACGCGAAAGCCGACCGATAATACGGAACACg  <  1:389556/140‑1 (MQ=255)
                                                                                                                            |                                                                                                                                       
ATGTACCGCCATCGGCCTGTTCAAAACGCCCCTGACGAATGGTATTCGCGCCAGTAAACGCGCCTTTCTCGTGGCCAAACAGTTCTGATTCGATCAAATCTTTTGGGATAGCTGCCATATTCAGCGCGATAAACGGCGCTTTGGCGCGCGGACTGTGGCGATGCAGGGCATGAGCGACCAGTTCTTTACCGGTGCCGGATTCGCCGTTAATCAGCACGCTAATAGAAGAACGCGAAAGCCGACCGATAATACGGAACACG  >  NC_000913/4054573‑4054832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A