Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F48 I1 R1	79	90.7	3162666	99.0%	3131039	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,058,356	C→A	intergenic (‑322/‑51)	glnA ← / → bipA	glutamine synthetase/ribosome‑dependent GTPase, ribosome assembly factor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,058,356	0	C	A	100.0%	456.5 / NA	128	intergenic (‑322/‑51)	glnA/bipA	glutamine synthetase/ribosome‑dependent GTPase, ribosome assembly factor
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (67/61); total (67/61)

Only 100 of 132 total aligned reads displayed.

TGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGACAAGCTGCTCCAACAAT  >  NC_000913/4058220‑4058491

tGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGAt                                                                                                                                      >  2:981889/1‑140 (MQ=255)

tGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGAt                                                                                                                                      >  2:1468397/1‑140 (MQ=255)

  cTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTa                                                                                                                                    >  1:1062785/1‑140 (MQ=255)

  cTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTa                                                                                                                                    >  2:285817/1‑140 (MQ=255)

  cTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTa                                                                                                                                    >  2:299764/1‑140 (MQ=255)

  cTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTa                                                                                                                                    >  2:452357/1‑140 (MQ=255)

  cTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCATTGGATAACCCTTTTTATGCGCAGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTa                                                                                                                                    >  1:1489528/1‑140 (MQ=255)

   ttCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTaa                                                                                                                                   >  2:221888/1‑140 (MQ=255)

    tCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCTCAAAGGGGCTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAAt                                                                                                                                  <  1:734286/140‑1 (MQ=255)

    tCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAAt                                                                                                                                  <  2:1491992/140‑1 (MQ=255)

    tCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAAt                                                                                                                                  >  1:532625/1‑140 (MQ=255)

    tCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAAt                                                                                                                                  <  1:630937/140‑1 (MQ=255)

    tCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAAt                                                                                                                                  <  1:837794/140‑1 (MQ=255)

    tCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAAt                                                                                                                                  >  1:846452/1‑140 (MQ=255)

    tCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAAt                                                                                                                                  <  2:75322/140‑1 (MQ=255)

    tCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAAt                                                                                                                                  <  2:905466/140‑1 (MQ=255)

    tCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAAt                                                                                                                                  >  2:8890/1‑140 (MQ=255)

     cAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATc                                                                                                                                 >  1:483969/1‑140 (MQ=255)

     cAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATc                                                                                                                                 >  1:1379615/1‑140 (MQ=255)

     cAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATc                                                                                                                                 >  1:1072885/1‑140 (MQ=255)

     cAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATc                                                                                                                                 >  2:626594/1‑140 (MQ=255)

     cAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATc                                                                                                                                 >  1:1505119/1‑140 (MQ=255)

       aTGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATcct                                                                                                                               >  2:1385422/1‑139 (MQ=255)

       aTGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCg                                                                                                                               >  1:577995/1‑140 (MQ=255)

                  aaGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAAc                                                                                                                    <  1:915135/140‑1 (MQ=255)

                  aaGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAAc                                                                                                                    <  1:1238805/140‑1 (MQ=255)

                  aaGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAAc                                                                                                                    >  1:264458/1‑140 (MQ=255)

                     ccccATGTTGGTGCAATGAACTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAAcgcg                                                                                                                 <  1:409492/138‑1 (MQ=255)

                     cACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAAcgcg                                                                                                                 <  1:1385422/140‑1 (MQ=255)

                     aaCCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGCCTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAAcgcg                                                                                                                 <  2:788419/139‑1 (MQ=255)

                      aCCATGTTGGTGCAATGACCTTTGGATAACACTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACgcgc                                                                                                                <  1:93279/140‑1 (MQ=255)

                          tGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTAtt                                                                                                            >  1:760966/1‑140 (MQ=255)

                          tGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTAtt                                                                                                            >  2:486580/1‑140 (MQ=255)

                          tGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGGGAAAGCGATCACAAAGGGACTCGGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTGGTAGTGAGATTAATCCGTGTACAATAACGCCCTAtt                                                                                                            >  1:905380/1‑140 (MQ=255)

                               gTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTaa                                                                                                       >  2:1508517/1‑140 (MQ=255)

                               gTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTaa                                                                                                       >  1:62974/1‑140 (MQ=255)

                                  cAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGc                                                                                                    >  2:1133827/1‑140 (MQ=255)

                                  cAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGc                                                                                                    >  1:774190/1‑140 (MQ=255)

                                     tGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTg                                                                                                 >  1:544600/1‑140 (MQ=255)

                                     tGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTg                                                                                                 >  1:323835/1‑140 (MQ=255)

                                     tGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTg                                                                                                 >  1:1547609/1‑140 (MQ=255)

                                     agACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTg                                                                                                 <  2:544600/139‑1 (MQ=255)

                                     agACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTg                                                                                                 <  2:532625/139‑1 (MQ=255)

                                          tttGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCa                                                                                            <  2:100233/140‑1 (MQ=255)

                                                 aaCCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTtgt                                                                                     >  2:254843/1‑140 (MQ=255)

                                                 aaCCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTtgt                                                                                     <  1:338940/140‑1 (MQ=255)

                                                   cccTTTTTATGGTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTtgtgt                                                                                   >  2:1244210/1‑139 (MQ=255)

                                                   cccTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGa                                                                                   >  1:225224/1‑140 (MQ=255)

                                                           aTGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGaaaaa                                                                           <  2:1239961/140‑1 (MQ=255)

                                                              cTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGTCTGAGGCAAAGTTGTGATCGAAAAATTg                                                                        >  2:1484855/1‑140 (MQ=255)

                                                                  gTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTa                                                                    <  2:1547609/140‑1 (MQ=255)

                                                                    gAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAat                                                                  <  1:254843/140‑1 (MQ=255)

                                                                    gAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAat                                                                  <  2:577995/140‑1 (MQ=255)

                                                                          gATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGcc                                                            >  1:1029640/1‑140 (MQ=255)

                                                                                 aaGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTTAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATcg                                                     <  2:458069/140‑1 (MQ=255)

                                                                                 aaGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATcg                                                     <  2:225224/140‑1 (MQ=255)

                                                                                 aaGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATcg                                                     <  1:1508517/140‑1 (MQ=255)

                                                                                  aGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATcgc                                                    >  1:1030003/1‑140 (MQ=255)

                                                                                  aGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATcgc                                                    <  2:659395/140‑1 (MQ=255)

                                                                                  aGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATcgc                                                    <  1:1133827/140‑1 (MQ=255)

                                                                                      aCTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCAc                                                >  1:1487671/1‑140 (MQ=255)

                                                                                        tctGCAAGACTGGATTGCGGGGGAAGTGTGTGATCGTCTTTTGTAGAGAAATTAATGCATGTACAAGAACGCGATATTTCGAATGCTTTATGCAAAGTTGTTATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGt                                              >  2:1488855/1‑140 (MQ=255)

                                                                                         ctGCAACACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGACGCAACGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTa                                             <  1:1488855/140‑1 (MQ=255)

                                                                                          tGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCATGTAg                                            >  2:1273005/1‑140 (MQ=255)

                                                                                          tGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAg                                            >  2:829429/1‑140 (MQ=255)

                                                                                          tGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAg                                            >  1:1482971/1‑140 (MQ=255)

                                                                                          tGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAg                                            >  1:799693/1‑140 (MQ=255)

                                                                                          tGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAg                                            >  2:1436460/1‑140 (MQ=255)

                                                                                          tGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAg                                            >  1:975356/1‑140 (MQ=255)

                                                                                            cAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGAc                                          <  1:486580/140‑1 (MQ=255)

                                                                                             aaTACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGAcc                                         <  1:1571321/140‑1 (MQ=255)

                                                                                                aCTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATg                                      <  1:125214/140‑1 (MQ=255)

                                                                                                    gTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTaa                                  >  2:1184124/1‑140 (MQ=255)

                                                                                                    gTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTaa                                  >  2:178949/1‑140 (MQ=255)

                                                                                                      ttGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTaaaa                                <  1:480363/140‑1 (MQ=255)

                                                                                                      ttGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTaaaa                                <  1:1515934/140‑1 (MQ=255)

                                                                                                         gggaggaTGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAacca                             <  1:626594/139‑1 (MQ=255)

                                                                                                         cGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAacca                             <  2:799693/140‑1 (MQ=255)

                                                                                                         cGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAacca                             <  2:640647/140‑1 (MQ=255)

                                                                                                         cGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAacca                             >  1:1264575/1‑140 (MQ=255)

                                                                                                         cGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAacca                             <  2:760966/140‑1 (MQ=255)

                                                                                                         cGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAacca                             <  1:1468397/140‑1 (MQ=255)

                                                                                                         cGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAacca                             <  2:1072885/140‑1 (MQ=255)

                                                                                                         cGGAGGATGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAacca                             >  2:1519726/1‑140 (MQ=255)

                                                                                                              gaTGTTTGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTg                        >  1:657493/1‑140 (MQ=255)

                                                                                                                   ttGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGa                   <  1:285817/140‑1 (MQ=255)

                                                                                                                   ttGTGATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGa                   <  2:1097446/140‑1 (MQ=255)

                                                                                                                       gATCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGACAAg               <  2:272882/140‑1 (MQ=255)

                                                                                                                        aTCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGCCAAgc              <  2:1029640/140‑1 (MQ=255)

                                                                                                                        aTCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGACAAgc              >  1:776847/1‑140 (MQ=255)

                                                                                                                         tCCTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGACAAgct             >  1:1398008/1‑140 (MQ=255)

                                                                                                                           cTGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGACAAgctgc           <  1:1436460/140‑1 (MQ=255)

                                                                                                                            tGTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGACAAgctgct          >  1:1290204/1‑140 (MQ=255)

                                                                                                                             gTTTTGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGACAAGCTGCTc         >  2:1367001/1‑140 (MQ=255)

                                                                                                                              ttttGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGACAAGCTGCTcc        >  2:1538805/1‑140 (MQ=255)

                                                                                                                                ttGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGACAAGCTGCTCcaa      <  1:998607/140‑1 (MQ=255)

                                                                                                                                ttGTAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGACAAGCTGCTCcaa      <  1:178949/140‑1 (MQ=255)

                                                                                                                                   tAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGACAAgctg            >  1:731264/1‑131 (MQ=255)

                                                                                                                                   tAGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGACAAgctg            <  2:731264/131‑1 (MQ=255)

                                                                                                                                    aGTGAGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGACAAGCTGCTCCAACAAt  <  1:1184124/140‑1 (MQ=255)

TGCTTCAATGGAAACATTAAGCACCATGTTGGTGCAATGACCTTTGGATAACCCTTTTTATGCTCCGTGAAAGCGATCACAAAGGGACTCTGCAATACTTGTTTGCGGAGGATGTTTGTGATCCTGTTTTGTAGTGCGATTAATCCGTGTACAATAACGCGCTATTTCTAATGCCTGAGGCAAAGTTGTGATCGAAAAATTGCGTAATATCGCCATCATCGCGCACGTAGACCATGGTAAAACCACCCTGGTAGACAAGCTGCTCCAACAAT  >  NC_000913/4058220‑4058491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A