Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,069,904	C→A	V166V (GTG→GTT)	yihR ←	putative aldose 1‑epimerase YihR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,069,904	0	C	A	100.0%	299.8 / NA	86	V166V (GTG→GTT)	yihR	putative aldose 1‑epimerase YihR
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (52/34); total (52/34)

AATTTAAATCCAGCTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGGGCGGCAGAAAAG  >  NC_000913/4069765‑4070037

aaTTTAAATCCAGCTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATAccc                                                                                                                                       <  1:1641835/140‑1 (MQ=255)

     aaaTCCAGCTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTTAGTTGCAGGTTAAATAAGGATGAATACCAACGcc                                                                                                                                  <  2:140770/140‑1 (MQ=255)

            gCTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGgc                                                                                                                           >  1:1069620/1‑140 (MQ=255)

            gCTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGgc                                                                                                                           >  1:830688/1‑140 (MQ=255)

            gCTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGgc                                                                                                                           >  1:1160300/1‑140 (MQ=255)

             cTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGgcg                                                                                                                          >  2:2106212/1‑140 (MQ=255)

             cTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGgcg                                                                                                                          >  2:238136/1‑140 (MQ=255)

             cTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGgcg                                                                                                                          >  2:952084/1‑140 (MQ=255)

             cTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGgcg                                                                                                                          >  2:2066896/1‑140 (MQ=255)

             cTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGgcg                                                                                                                          >  1:875560/1‑140 (MQ=255)

                atcaACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTg                                                                                                                       <  1:1881655/140‑1 (MQ=255)

                      gtggtgAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAg                                                                                                                 <  1:180567/140‑1 (MQ=255)

                      gtggtgAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAg                                                                                                                 <  1:2124441/140‑1 (MQ=255)

                       tggtgAAGCTTTTTCTGATTCTCGTGCACATCGCCGGCATAAACCTGTTTTGCCGGAATCTGTAATAGATATTCATCAACAGATGATTAGTTGCAGGGTAAATCGGGCTGAATACCAACACCATAAGGCGATgtgcaagt                                                                                                                >  2:1100254/1‑133 (MQ=255)

                       tggtgAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGt                                                                                                                >  1:1147906/1‑140 (MQ=255)

                       tggtgAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGt                                                                                                                >  2:1757502/1‑140 (MQ=255)

                          tgAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGcc                                                                                                             >  1:153992/1‑140 (MQ=255)

                          tgAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGcc                                                                                                             <  1:238136/140‑1 (MQ=255)

                                gTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATAtt                                                                                                       >  1:382134/1‑140 (MQ=255)

                                 ttGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACa                                                                                                                  <  2:598854/128‑1 (MQ=255)

                                 ttGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACa                                                                                                                  >  1:598854/1‑128 (MQ=255)

                                  tGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCt                                                                                                     <  2:962346/140‑1 (MQ=255)

                                            gcgTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGAt                                                                                           <  2:146813/140‑1 (MQ=255)

                                            gcgTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGAt                                                                                           <  2:1147906/140‑1 (MQ=255)

                                              gTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGAtct                                                                                         >  2:1094263/1‑140 (MQ=255)

                                                gCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCa                                                                                       <  1:1100254/140‑1 (MQ=255)

                                                      cGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGaa                                                                                 >  2:336610/1‑140 (MQ=255)

                                                      cGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGaa                                                                                 <  2:405586/140‑1 (MQ=255)

                                                      cGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGaa                                                                                 <  1:1651653/140‑1 (MQ=255)

                                                      cGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGaa                                                                                 >  1:1917467/1‑140 (MQ=255)

                                                          ggCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGAc                                                                             <  1:900137/140‑1 (MQ=255)

                                                           gCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGAcc                                                                            <  2:1734436/140‑1 (MQ=255)

                                                           gCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGAcc                                                                            <  1:952084/140‑1 (MQ=255)

                                                            cATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGAccc                                                                           >  2:92185/1‑140 (MQ=255)

                                                            cATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGAccc                                                                           >  1:670061/1‑140 (MQ=255)

                                                                aaCCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCgtgt                                                                       >  2:443643/1‑140 (MQ=255)

                                                                aaCCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCgtgt                                                                       <  1:1242049/140‑1 (MQ=255)

                                                                       tttGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGtt                                                                <  2:1917467/140‑1 (MQ=255)

                                                                          gCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAg                                                             <  2:153992/140‑1 (MQ=255)

                                                                          gCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAg                                                             <  1:225088/140‑1 (MQ=255)

                                                                          gCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAg                                                             <  2:382134/140‑1 (MQ=255)

                                                                           ccGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGc                                                            >  2:531980/1‑140 (MQ=255)

                                                                           ccGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGc                                                            >  2:2085967/1‑140 (MQ=255)

                                                                           ccGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGc                                                            >  1:242014/1‑140 (MQ=255)

                                                                                   tGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAaac                                                    <  1:336610/140‑1 (MQ=255)

                                                                                          gATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTtgt                                             <  1:2085967/140‑1 (MQ=255)

                                                                                           atatTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTtgtg                                            >  1:908028/1‑140 (MQ=255)

                                                                                           atatTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTtgtg                                            >  1:714301/1‑140 (MQ=255)

                                                                                              ttCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAg                                         <  1:1757502/140‑1 (MQ=255)

                                                                                              ttCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAg                                         <  1:92185/140‑1 (MQ=255)

                                                                                                catcaACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGcc                                       >  1:1078061/1‑140 (MQ=255)

                                                                                                catcaACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGcc                                       >  2:535297/1‑140 (MQ=255)

                                                                                                   caACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAg                                         >  2:80787/1‑135 (MQ=255)

                                                                                                   caACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAg                                         <  1:80787/135‑1 (MQ=255)

                                                                                                     aCAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCAt                                  >  1:772459/1‑140 (MQ=255)

                                                                                                      cAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATa                                 >  2:1612215/1‑140 (MQ=255)

                                                                                                         aTGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAAc                              >  2:390006/1‑140 (MQ=255)

                                                                                                         aTGTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAAc                              >  1:929305/1‑140 (MQ=255)

                                                                                                           gTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACgg                            <  2:670061/140‑1 (MQ=255)

                                                                                                           gTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACgg                            >  2:1492770/1‑140 (MQ=255)

                                                                                                           gTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACgg                            <  1:2026841/140‑1 (MQ=255)

                                                                                                           gTTAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACgg                            <  2:908028/140‑1 (MQ=255)

                                                                                                             tAAGTTGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGAt                          <  2:969860/140‑1 (MQ=255)

                                                                                                                 ttGCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGcc                      >  2:1213862/1‑140 (MQ=255)

                                                                                                                   gCAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGt                    >  2:410821/1‑140 (MQ=255)

                                                                                                                    cAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTa                   >  1:1531654/1‑140 (MQ=255)

                                                                                                                    cAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTa                   >  2:90937/1‑140 (MQ=255)

                                                                                                                    cAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTa                   >  2:1224093/1‑140 (MQ=255)

                                                                                                                    cAGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTACGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTa                   >  1:348426/1‑140 (MQ=255)

                                                                                                                     aGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTaa                  >  2:1729144/1‑140 (MQ=255)

                                                                                                                     aGGTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTaa                  >  1:1869319/1‑140 (MQ=255)

                                                                                                                      ggTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAAc                 >  1:1838659/1‑140 (MQ=255)

                                                                                                                      ggTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAAc                 >  1:1813436/1‑140 (MQ=255)

                                                                                                                      ggTTAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGCGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAAc                 >  2:894226/1‑140 (MQ=255)

                                                                                                                         tAAATAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTgg              >  2:1186667/1‑140 (MQ=255)

                                                                                                                           aaTAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGggc            <  1:1729144/140‑1 (MQ=255)

                                                                                                                             tAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGggcgg          <  2:1069620/140‑1 (MQ=255)

                                                                                                                             tAAGGATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGggcgg          <  1:1094263/140‑1 (MQ=255)

                                                                                                                                ggATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGGGCGGCAg       <  2:1813436/140‑1 (MQ=255)

                                                                                                                                 gATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGGGCGGCAGa      >  1:1063695/1‑140 (MQ=255)

                                                                                                                                 gATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGGGCGGCAGa      >  2:867773/1‑140 (MQ=255)

                                                                                                                                 gATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGGGCGGCAGa      >  1:1774673/1‑140 (MQ=255)

                                                                                                                                 gATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGGGCGGCAGa      >  1:202620/1‑140 (MQ=255)

                                                                                                                                 gATGAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGGGCGGCAGa      >  2:1436017/1‑140 (MQ=255)

                                                                                                                                    gAATACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGGGCGGCAGaaaa   <  2:772459/140‑1 (MQ=255)

                                                                                                                                     aaTACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGGGCGGCAGAAAAg  >  2:1597375/1‑140 (MQ=255)

                                                                                                                                     aaTACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGGGCGGCAGAAAAg  >  2:154085/1‑140 (MQ=255)

                                                                                                                                     aaTACCAACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGGGCGGCAGAAAAg  >  1:1448239/1‑140 (MQ=255)

AATTTAAATCCAGCTCATCAACGTGGTGAAGCGTTGTCGGATTCGCGTGCTCATCGACGGCATAAACCTGGTTTGCCGGAAGCTGGAACAGATATTCATCAACAGATGTTAAGTTGCAGGTTAAATAAGGATGAATACCCACGCCATAAGGCGCTGCGACAGTGCCGATATTCTGGCTTGCGATCTCAACGGAAAGACCCGTGTGTGCGTTGAGCGAATAAACAACTTGTGAAGCCAGCATAAACGGATAGCCGTAACTGGGCGGCAGAAAAG  >  NC_000913/4069765‑4070037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A