Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,094,938	G→T	L349M (CTG→ATG)	rhaA ←	L‑rhamnose isomerase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,094,938	0	G	T	100.0%	457.7 / NA	131	L349M (CTG→ATG)	rhaA	L‑rhamnose isomerase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (60/71); total (60/71)

Only 100 of 134 total aligned reads displayed.

ACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCAGGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACTGGCAATTGCCTGGGTTTCA  >  NC_000913/4094801‑4095074

aCGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCAtgg                                                                                                                                        >  2:718271/1‑140 (MQ=255)

   ttGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCtt                                                                                                                                     <  1:313192/140‑1 (MQ=255)

   ttGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCtt                                                                                                                                     <  2:2087554/140‑1 (MQ=255)

   ttGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCtt                                                                                                                                     <  2:1558261/140‑1 (MQ=255)

   ttGGAAATCCATTTCCCAGCCCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCtt                                                                                                                                     <  2:375231/140‑1 (MQ=255)

     ggCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCtttt                                                                                                                                   >  1:1639360/1‑140 (MQ=255)

     ggCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCtttt                                                                                                                                   >  2:1504808/1‑140 (MQ=255)

     ggCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCtttt                                                                                                                                   >  2:528123/1‑140 (MQ=255)

           aCATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCata                                                                                                                             <  1:736065/140‑1 (MQ=255)

           aCATTTCCCAGAACGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCata                                                                                                                             <  1:2127481/140‑1 (MQ=255)

            cATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACACACGCAGCATGGCTTTTTTCatat                                                                                                                            <  2:597548/140‑1 (MQ=255)

             aTTTCCCAGCCCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATAtt                                                                                                                           <  1:1138435/140‑1 (MQ=255)

               ttCCCAGACCGCCTGCCACGGCAACGATTTCTGCTTTTCCAGCAGTGCCAGACGCGAAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGc                                                                                                                         <  2:174869/140‑1 (MQ=255)

               ttCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGc                                                                                                                         >  1:28458/1‑140 (MQ=255)

               ttCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGGGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGc                                                                                                                         <  1:581708/140‑1 (MQ=255)

                tCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCg                                                                                                                        >  2:1456539/1‑140 (MQ=255)

                  ccAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCgtg                                                                                                                      <  1:2012152/140‑1 (MQ=255)

                  ccAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCgtg                                                                                                                      <  1:1097862/140‑1 (MQ=255)

                      aCCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTAcc                                                                                                                  >  1:644300/1‑140 (MQ=255)

                      aCCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTAcc                                                                                                                  >  2:1074239/1‑140 (MQ=255)

                      aCCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTAcc                                                                                                                  >  2:837739/1‑140 (MQ=255)

                      aCCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTAcc                                                                                                                  >  2:1641107/1‑140 (MQ=255)

                       ccGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCa                                                                                                                 >  1:36772/1‑140 (MQ=255)

                          ccTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATg                                                                                                              >  1:338637/1‑140 (MQ=255)

                          ccTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATg                                                                                                              >  1:203640/1‑140 (MQ=255)

                          ccTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATg                                                                                                              >  1:1056162/1‑140 (MQ=255)

                           cTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGa                                                                                                             >  2:1573456/1‑140 (MQ=255)

                           cTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGa                                                                                                             >  1:1824580/1‑140 (MQ=255)

                                   gCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCAcg                                                                                                       <  2:1557429/138‑1 (MQ=255)

                                      aCGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCa                                                                                                  <  2:338637/140‑1 (MQ=255)

                                       cGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCaa                                                                                                 >  2:1484708/1‑140 (MQ=255)

                                        gATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAAt                                                                                                <  1:1058856/140‑1 (MQ=255)

                                        gATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAAt                                                                                                <  2:234132/140‑1 (MQ=255)

                                         aTTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATg                                                                                               <  2:1316785/140‑1 (MQ=255)

                                         aTTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATg                                                                                               <  1:1573456/140‑1 (MQ=255)

                                           ttCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCg                                                                                             >  1:1828173/1‑140 (MQ=255)

                                           ttCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCg                                                                                             <  1:1653304/140‑1 (MQ=255)

                                           ttCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCg                                                                                             <  1:1566459/140‑1 (MQ=255)

                                            tCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCATCGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCgg                                                                                            <  2:1798358/140‑1 (MQ=255)

                                            tCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCgg                                                                                            <  2:202415/140‑1 (MQ=255)

                                                 tctTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGAt                                                                                       <  1:856115/140‑1 (MQ=255)

                                                   ttCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATag                                                                                     >  1:1893056/1‑140 (MQ=255)

                                                    tCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATaga                                                                                    >  1:1547067/1‑140 (MQ=255)

                                                      aagcagTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAgg                                                                                  <  2:922154/139‑1 (MQ=255)

                                                        gcagTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCa                                                                                <  1:1484708/140‑1 (MQ=255)

                                                        acagTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCa                                                                                <  2:859429/139‑1 (MQ=255)

                                                            tGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCga                                                                            >  2:832793/1‑140 (MQ=255)

                                                             gCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGTGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCgaa                                                                           <  2:1297998/140‑1 (MQ=255)

                                                              ccAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCgaag                                                                          <  2:1547067/140‑1 (MQ=255)

                                                              ccAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCgaag                                                                          >  1:1793127/1‑140 (MQ=255)

                                                                 gACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGaagaag                                                                       >  2:1921955/1‑140 (MQ=255)

                                                                   cgcgCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTc                                                                     <  1:1883343/140‑1 (MQ=255)

                                                                    gcgcAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCa                                                                    <  1:887303/140‑1 (MQ=255)

                                                                     cgcAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCaa                                                                   <  2:1056162/140‑1 (MQ=255)

                                                                      gcAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAg                                                                  >  1:5091/1‑140 (MQ=255)

                                                                      gcAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAg                                                                  >  1:2129760/1‑140 (MQ=255)

                                                                       cAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAgg                                                                 >  2:1183491/1‑140 (MQ=255)

                                                                        aGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGc                                                                <  2:1133405/140‑1 (MQ=255)

                                                                        aGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGc                                                                <  1:2000555/140‑1 (MQ=255)

                                                                        aGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGc                                                                <  1:1070498/140‑1 (MQ=255)

                                                                        aGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGc                                                                <  2:1828173/140‑1 (MQ=255)

                                                                             aaTCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGata                                                           <  1:1421147/140‑1 (MQ=255)

                                                                                 gcccgccGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCa                                                       <  2:28458/140‑1 (MQ=255)

                                                                                  cccgccGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCAc                                                      >  2:910921/1‑140 (MQ=255)

                                                                                   ccgccgCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCAcc                                                     <  1:1641107/140‑1 (MQ=255)

                                                                                   ccgccgCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCAcc                                                     <  2:1893056/140‑1 (MQ=255)

                                                                                    cgccgcTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCAccc                                                    >  2:160726/1‑140 (MQ=255)

                                                                                    cgccgcTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCAccc                                                    >  2:732219/1‑140 (MQ=255)

                                                                                    cgccgcTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCAccc                                                    >  1:2063068/1‑140 (MQ=255)

                                                                                     gccgcTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCg                                                   <  1:832793/140‑1 (MQ=255)

                                                                                      ccgcTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCgg                                                  >  1:476905/1‑140 (MQ=255)

                                                                                       cgcTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGt                                                 <  1:1504808/140‑1 (MQ=255)

                                                                                               gCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGa                                         <  1:404889/140‑1 (MQ=255)

                                                                                                    cgcAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGt                                     >  2:135703/1‑139 (MQ=255)

                                                                                                    cgcAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGt                                     <  1:135703/139‑1 (MQ=255)

                                                                                                    cgcAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTg                                    >  2:970460/1‑140 (MQ=255)

                                                                                                    cgcAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTg                                    >  2:481063/1‑140 (MQ=255)

                                                                                                    cgcAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTg                                    >  1:1375569/1‑140 (MQ=255)

                                                                                                              cGGTAGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAAtc                          >  2:466536/1‑140 (MQ=255)

                                                                                                                  aGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCAc                      <  1:1173218/140‑1 (MQ=255)

                                                                                                                  aGGTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCAc                      <  2:1327021/140‑1 (MQ=255)

                                                                                                                   ggTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACt                     >  2:422044/1‑140 (MQ=255)

                                                                                                                   ggTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACt                     >  2:971807/1‑140 (MQ=255)

                                                                                                                   ggTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACt                     >  1:1979540/1‑140 (MQ=255)

                                                                                                                   ggTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACt                     >  1:947415/1‑140 (MQ=255)

                                                                                                                   ggTTCCAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACt                     >  1:277606/1‑140 (MQ=255)

                                                                                                                   ggTTCCAACAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACt                     >  1:1904646/1‑140 (MQ=255)

                                                                                                                       ccAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACTGGCa                 <  1:971807/140‑1 (MQ=255)

                                                                                                                       ccAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACTGGCa                 <  2:5091/140‑1 (MQ=255)

                                                                                                                        cAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACTGGCaa                >  1:2058637/1‑140 (MQ=255)

                                                                                                                        cAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACTGGCaa                <  1:970460/140‑1 (MQ=255)

                                                                                                                        cAGCAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACTGGCaa                <  2:1979540/140‑1 (MQ=255)

                                                                                                                           cAACGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACTGGCAATTg             >  2:1777851/1‑140 (MQ=255)

                                                                                                                            aaCGCACGCAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACTGGCAATTGc            <  2:1375569/140‑1 (MQ=255)

                                                                                                                             acgcacgcAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAGGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACTGGCAATTGcc           <  2:1580321/140‑1 (MQ=255)

                                                                                                                             acgcacgcAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACTGGCAATTGcc           <  1:732219/140‑1 (MQ=255)

                                                                                                                             acgcacgcAGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACTGGCAATTGcc           <  2:1904646/140‑1 (MQ=255)

                                                                                                                              cgcacgcaGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACTGGCAATTGCCt          >  1:1567146/1‑140 (MQ=255)

                                                                                                                               gcacgcaGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACTGGCAATTGCCTg         <  2:203640/140‑1 (MQ=255)

                                                                                                                                  cgcaGCATGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACTGGCAATTGCCTGGGt      >  2:782526/1‑140 (MQ=255)

ACGTTGGCAATACATTTCCCAGACCGCCTGCCACGGCAACGATTTCTGCTCTTCCAGCAGTGCCAGACGCGCAGTGTAATCGCCCGCCGCTTCCAGCTTGCGCAGCTCAGCGGTAGGTTCCAGCAACGCACGCAGCAGGGCTTTTTTCATATTGCGTGTACCAATGACCCACGCGGCAATGCGGTTGATAGAGGCATCGAAGAAGTCAAGGCCGATATGCACCCGGTCAAACAGATCGTGACGCACAATCTCACTGGCAATTGCCTGGGTTTCA  >  NC_000913/4094801‑4095074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A