Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,100,835	C→A	P9Q (CCG→CAG)	sodA →	superoxide dismutase (Mn)

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,100,835	0	C	A	100.0%	424.9 / NA	122	P9Q (CCG→CAG)	sodA	superoxide dismutase (Mn)
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (79/43); total (79/43)

Only 100 of 124 total aligned reads displayed.

TTACGAAAAGTACGGCATTGATAATCATTTTCAATATCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCCGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGCCAACCTGCC  >  NC_000913/4100698‑4100967

ttACGAAAAGTACGGCATTGATAATCATTTTCAATATCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGt                                                                                                                                    >  1:52494/1‑140 (MQ=255)

 tACGAAAAGTACGGCATTGATAATCATTTTCAATATCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTa                                                                                                                                   >  1:760597/1‑140 (MQ=255)

  aCGAAAAGTACGGCATTGATAATCATTTTCAATATCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTAt                                                                                                                                  <  2:2148544/140‑1 (MQ=255)

  aCGAAAAGTACGGCATTGATAATCATTTTCAATATCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTAt                                                                                                                                  >  1:2057468/1‑140 (MQ=255)

          tACGGCATTGATAATCATTTTCAATATCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGa                                                                                                                          <  1:1020993/140‑1 (MQ=255)

          tACGGCATTGATAATCATTTTCAATATCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGa                                                                                                                          <  1:2007898/140‑1 (MQ=255)

          tACGGCATTGATAATCATTTTCAATATCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGa                                                                                                                          <  1:190397/140‑1 (MQ=255)

            cGGCATTGATAATCATTTTCAATATCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATg                                                                                                                        >  1:116155/1‑140 (MQ=255)

                        tCATTTTCAATATCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGc                                                                                                            >  1:1418189/1‑140 (MQ=255)

                         cATTTTCAATATCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCa                                                                                                           >  2:742758/1‑140 (MQ=255)

                           ttttCAATATCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACt                                                                                                         >  1:482324/1‑140 (MQ=255)

                            tttCAATATCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACtt                                                                                                        >  2:1839914/1‑140 (MQ=255)

                             ttCAATTTCATTTAATTAACTATAATGAACCATCTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTc                                                                                                       >  1:1541337/1‑140 (MQ=255)

                             ttCAATATCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTc                                                                                                       >  1:422246/1‑140 (MQ=255)

                             ttCAATATCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTc                                                                                                       >  1:161791/1‑140 (MQ=255)

                                   atCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAg                                                                                                 <  2:2057468/140‑1 (MQ=255)

                                   atCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAg                                                                                                 <  1:742758/140‑1 (MQ=255)

                                   atCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAg                                                                                                 >  1:967609/1‑140 (MQ=255)

                                   atCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAg                                                                                                 <  1:1839914/140‑1 (MQ=255)

                                    tCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGc                                                                                                >  1:840334/1‑140 (MQ=255)

                                    tCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGc                                                                                                >  2:592244/1‑140 (MQ=255)

                                     cATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATACCCCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAg                                                                                                 <  1:381815/140‑1 (MQ=255)

                                               aCTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGaa                                                                                     >  2:58669/1‑140 (MQ=255)

                                                cTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGaa                                                                                     >  1:875710/1‑139 (MQ=255)

                                                cTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGaa                                                                                     <  2:875710/139‑1 (MQ=255)

                                                   taATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATcc                                                                                 >  1:76588/1‑140 (MQ=255)

                                                    aaTGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATcca                                                                                >  1:920785/1‑140 (MQ=255)

                                                    aaTGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATcca                                                                                <  2:881379/140‑1 (MQ=255)

                                                     aTGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTTCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATccac                                                                               <  2:1541337/140‑1 (MQ=255)

                                                         aCCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCcaccaca                                                                           >  1:1098822/1‑140 (MQ=255)

                                                          ccAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATccacc                                                                              >  2:960873/1‑136 (MQ=255)

                                                          ccAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATccacc                                                                              <  1:960873/136‑1 (MQ=255)

                                                          ccAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCcaccacac                                                                          >  1:361940/1‑140 (MQ=255)

                                                          ccAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCcaccacac                                                                          >  2:1855810/1‑140 (MQ=255)

                                                          ccAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCcaccacac                                                                          >  2:1133752/1‑140 (MQ=255)

                                                           cAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCcaccacacc                                                                         >  1:569147/1‑140 (MQ=255)

                                                            aaCTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCcaccacacca                                                                        <  2:586678/140‑1 (MQ=255)

                                                             aCTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATccac                                                                               >  2:1155171/1‑132 (MQ=255)

                                                             aCTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATccac                                                                               <  1:1155171/132‑1 (MQ=255)

                                                             aCTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATcca                                                                                <  2:211245/131‑1 (MQ=255)

                                                             aCTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCaa                                                                       >  2:2114217/1‑140 (MQ=255)

                                                             aCTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCaa                                                                       >  1:2014861/1‑140 (MQ=255)

                                                             aCTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCaa                                                                       >  1:2086801/1‑140 (MQ=255)

                                                             aCTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCaa                                                                       >  1:631066/1‑140 (MQ=255)

                                                             aCTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCaa                                                                       >  1:629893/1‑140 (MQ=255)

                                                             aCTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGA‑AAGCAGACCATGGAAATCCACCACACCaaa                                                                      >  2:1107679/1‑140 (MQ=255)

                                                               tGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAac                                                                     <  2:76588/140‑1 (MQ=255)

                                                                  ttACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCATACCAAac                                                                     <  1:668692/137‑1 (MQ=255)

                                                                  ttACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCATACCAAac                                                                     >  2:668692/1‑137 (MQ=255)

                                                                        ggCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGa                                                            <  1:1855810/140‑1 (MQ=255)

                                                                        ggCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGa                                                            <  2:840334/140‑1 (MQ=255)

                                                                        ggCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGa                                                            <  2:1452706/140‑1 (MQ=255)

                                                                         gCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGAc                                                           >  2:2043393/1‑140 (MQ=255)

                                                                           aTTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGTAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAg                                                             >  2:1640011/1‑136 (MQ=255)

                                                                           aTTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGTAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAg                                                             <  1:1640011/136‑1 (MQ=255)

                                                                           aTTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCt                                                         >  2:845067/1‑140 (MQ=255)

                                                                                   tCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAaac                                                 >  2:1186951/1‑140 (MQ=255)

                                                                                    cGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAaaca                                                >  1:1170176/1‑140 (MQ=255)

                                                                                      gccgccCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGa                                                            >  2:961400/1‑126 (MQ=255)

                                                                                      gccgccCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGa                                                            <  1:961400/126‑1 (MQ=255)

                                                                                      gccgccCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGT‑AAcaacg                                             >  1:1340915/1‑140 (MQ=255)

                                                                                       ccgccCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAAcaacg                                             >  2:741896/1‑140 (MQ=255)

                                                                                       ccgccCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAAcaacg                                             >  1:257390/1‑140 (MQ=255)

                                                                                       ccgccCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAAcaacg                                             <  2:361940/140‑1 (MQ=255)

                                                                                        cgccCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAAcaacgc                                            >  2:1185457/1‑140 (MQ=255)

                                                                                          cccGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAAcaacgcca                                          >  2:1967008/1‑140 (MQ=255)

                                                                                          cccGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAAcaacgcca                                          >  2:1710862/1‑140 (MQ=255)

                                                                                           ccGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCTACCACACCAAACACCATCAGACCTACGTAAAcaacgccaa                                         >  1:798161/1‑140 (MQ=255)

                                                                                             gACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAAcaacgccaacg                                       <  1:1185457/140‑1 (MQ=255)

                                                                                             gACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAAcaacgccaacg                                       <  1:845067/140‑1 (MQ=255)

                                                                                                          aTGAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAg                          >  1:544169/1‑140 (MQ=255)

                                                                                                            gAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGcc                        >  1:1322768/1‑140 (MQ=255)

                                                                                                            gAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGcc                        >  2:1745894/1‑140 (MQ=255)

                                                                                                            gAATATGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCAACAGGCCTACGTAAACAACGCCAACGCGGCGCTGGAAAGcc                        >  2:1273292/1‑140 (MQ=255)

                                                                                                              atatGAGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTg                      >  2:958555/1‑140 (MQ=255)

                                                                                                                   aGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGa                 >  1:552269/1‑140 (MQ=255)

                                                                                                                   aGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGa                 <  2:920785/140‑1 (MQ=255)

                                                                                                                   aGCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGa                 >  1:265316/1‑140 (MQ=255)

                                                                                                                    gCTATA‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGaa                >  1:454167/1‑140 (MQ=255)

                                                                                                                       ata‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATTAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAAttt             >  2:770905/1‑140 (MQ=255)

                                                                                                                        ta‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTg            >  2:1653269/1‑140 (MQ=255)

                                                                                                                        ta‑‑CCCTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTg            >  2:1358355/1‑140 (MQ=255)

                                                                                                                            cccTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGcc          <  1:741896/140‑1 (MQ=255)

                                                                                                                            cccTGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGcc          >  1:1292498/1‑140 (MQ=255)

                                                                                                                               tGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGCCAAc       <  1:958555/140‑1 (MQ=255)

                                                                                                                               tGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGCCAAc       >  1:2125041/1‑140 (MQ=255)

                                                                                                                               tGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGCCAAc       >  2:378985/1‑140 (MQ=255)

                                                                                                                               tGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGCCAAc       >  1:1125470/1‑140 (MQ=255)

                                                                                                                               tGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGCCAAc       >  1:337654/1‑140 (MQ=255)

                                                                                                                               tGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGCCAAc       <  1:58669/140‑1 (MQ=255)

                                                                                                                               tGCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAAAATTTGCCAAc       <  2:1523248/140‑1 (MQ=255)

                                                                                                                                gCCATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGCCAAcc      >  2:1694299/1‑140 (MQ=255)

                                                                                                                                 ccATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGcc          <  1:1025624/135‑1 (MQ=255)

                                                                                                                                 ccATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGcc          >  2:1025624/1‑135 (MQ=255)

                                                                                                                                 ccATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGCCAACCt     <  2:265316/140‑1 (MQ=255)

                                                                                                                                 ccATCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGCCAACCt     <  2:1232304/140‑1 (MQ=255)

                                                                                                                                   aTCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGCCAACCTGc   <  2:337654/140‑1 (MQ=255)

                                                                                                                                    tCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGCCAACCTGcc  >  1:158476/1‑140 (MQ=255)

                                                                                                                                    tCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGCCAACCTGcc  >  1:1834577/1‑140 (MQ=255)

                                                                                                                                    tCCCTGCAGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGCCAACCTGcc  >  1:1061647/1‑140 (MQ=255)

TTACGAAAAGTACGGCATTGATAATCATTTTCAATATCATTTAATTAACTATAATGAACCAACTGCTTACGCGGCATTAACAATCGGCCGCCCGACAATACTGGAGATGAATATGAGCTATA‑‑CCCTGCCATCCCTGCCGTATGCTTACGATGCCCTGGAACCGCACTTCGATAAGCAGACCATGGAAATCCACCACACCAAACACCATCAGACCTACGTAAACAACGCCAACGCGGCGCTGGAAAGCCTGCCAGAATTTGCCAACCTGCC  >  NC_000913/4100698‑4100967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A