Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,175,375	C→A	intergenic (‑349/‑13)	coaA ← / → thrU	pantothenate kinase/tRNA‑Thr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,175,375	0	C	A	99.1%	391.5 / ‑3.6	115	intergenic (‑349/‑13)	coaA/thrU	pantothenate kinase/tRNA‑Thr
Reads supporting (aligned to +/- strand): ref base C (1/0); new base A (53/61); total (54/61)
Fisher's exact test for biased strand distribution p-value = 4.70e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 115 total aligned reads displayed.

TGATGTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAA  >  NC_000913/4175247‑4175510

tgatgTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTgt                                                                                                                              >  2:1100808/1‑139 (MQ=255)

tgatgTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTgt                                                                                                                              >  2:1006685/1‑139 (MQ=255)

tgatgTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGa                                                                                                                              >  1:2102741/1‑140 (MQ=255)

tgatgTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGa                                                                                                                              >  1:451876/1‑140 (MQ=255)

tgatgTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGa                                                                                                                              >  2:1004652/1‑140 (MQ=255)

tgatgTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGa                                                                                                                              >  2:500236/1‑140 (MQ=255)

tgatgTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGa                                                                                                                              >  2:1897738/1‑140 (MQ=255)

  atgTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATg                                                                                                                            <  1:1101945/140‑1 (MQ=255)

   tgTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGc                                                                                                                           <  2:634082/140‑1 (MQ=255)

   tgTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGc                                                                                                                           <  1:1323113/140‑1 (MQ=255)

   tgTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGc                                                                                                                           <  2:1696205/140‑1 (MQ=255)

    gTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGcc                                                                                                                          >  1:1829335/1‑140 (MQ=255)

      tGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGa                                                                                                                        <  1:1004652/140‑1 (MQ=255)

        aaaaaGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACt                                                                                                                      <  1:923186/140‑1 (MQ=255)

        aaaaaGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACt                                                                                                                      >  2:483823/1‑140 (MQ=255)

        aaaaaGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACt                                                                                                                      >  1:570326/1‑140 (MQ=255)

        aaaaaGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACt                                                                                                                      <  2:8194/140‑1 (MQ=255)

        aaaaaGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAACGAGCGCTACTTGATGCCGACt                                                                                                                      >  1:1186775/1‑140 (MQ=255)

          aaaGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTa                                                                                                                    <  1:915221/140‑1 (MQ=255)

           aaGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAg                                                                                                                   <  1:375748/140‑1 (MQ=255)

           aaGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAg                                                                                                                   <  2:1507954/140‑1 (MQ=255)

            aGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATATAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAgt                                                                                                                  >  2:1710079/1‑139 (MQ=255)

            aGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGc                                                                                                                  <  1:500236/140‑1 (MQ=255)

            aGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGc                                                                                                                  <  1:1049091/140‑1 (MQ=255)

             gtgtGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCt                                                                                                                 <  2:1997362/140‑1 (MQ=255)

              tgtgCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTc                                                                                                                <  1:197084/140‑1 (MQ=255)

              tgtgCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTc                                                                                                                <  2:1559061/140‑1 (MQ=255)

              tgtgCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTc                                                                                                                <  2:570326/140‑1 (MQ=255)

               gtgCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCa                                                                                                               <  1:1613688/140‑1 (MQ=255)

               gtgCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCa                                                                                                               >  2:1613688/1‑140 (MQ=255)

               gtgCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATATGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCa                                                                                                               >  1:879898/1‑140 (MQ=255)

                tgCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCa                                                                                                               >  2:1197025/1‑139 (MQ=255)

                tgCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAg                                                                                                              >  1:187151/1‑140 (MQ=255)

                    aaTCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAgtagg                                                                                                          <  1:1474891/140‑1 (MQ=255)

                     aTCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAgtaggt                                                                                                         <  2:546967/140‑1 (MQ=255)

                         gCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTagag                                                                                                     <  1:1006685/140‑1 (MQ=255)

                          cccTCCGTTGGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGc                                                                                                    >  2:1380970/1‑140 (MQ=255)

                            cTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCaa                                                                                                  <  1:1532557/140‑1 (MQ=255)

                              ccGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACt                                                                                                <  2:1044042/140‑1 (MQ=255)

                              ccGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACt                                                                                                <  2:1815629/140‑1 (MQ=255)

                               cGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTg                                                                                               >  1:878150/1‑140 (MQ=255)

                               cGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTg                                                                                               >  1:796221/1‑140 (MQ=255)

                               cGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTg                                                                                               >  1:1236176/1‑140 (MQ=255)

                               cGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTg                                                                                               >  2:1304814/1‑140 (MQ=255)

                               cGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTg                                                                                               >  2:307058/1‑140 (MQ=255)

                               cGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTg                                                                                               >  1:1856478/1‑140 (MQ=255)

                               cGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCACAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTg                                                                                               >  1:606412/1‑140 (MQ=255)

                                 ttCGGCTGTTTCTTCATCTTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGAc                                                                                             <  1:1604990/140‑1 (MQ=255)

                                 ttCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGAc                                                                                             >  1:888299/1‑140 (MQ=255)

                                 ttCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGAc                                                                                             <  2:1829335/140‑1 (MQ=255)

                                 ttCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGAc                                                                                             >  2:1390172/1‑140 (MQ=255)

                                 ttCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGAc                                                                                             <  2:19388/140‑1 (MQ=255)

                                   cGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACtt                                                                                           <  1:1710079/140‑1 (MQ=255)

                                    ggCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTg                                                                                          <  2:187151/140‑1 (MQ=255)

                                      cTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTa                                                                                        <  2:796221/140‑1 (MQ=255)

                                         tttCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATc                                                                                     <  1:1380970/140‑1 (MQ=255)

                                         tttCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATc                                                                                     <  1:967244/140‑1 (MQ=255)

                                           tcttcATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCat                                                                                   >  2:1749471/1‑139 (MQ=255)

                                           tcttcATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAg                                                                                   >  2:480917/1‑140 (MQ=255)

                                                   gtgtCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCAc                                                                           <  1:1669855/140‑1 (MQ=255)

                                                   gtgtCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCAc                                                                           <  2:1858123/140‑1 (MQ=255)

                                                   gtgtCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCAc                                                                           >  2:1984841/1‑140 (MQ=255)

                                                    tgtCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCAcc                                                                          >  1:1016899/1‑140 (MQ=255)

                                                     gtCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCa                                                                         >  2:884322/1‑140 (MQ=255)

                                                      tCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAg                                                                        >  2:1373374/1‑140 (MQ=255)

                                                         cATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTc                                                                     >  2:844676/1‑140 (MQ=255)

                                                              aaTGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTc                                                                <  2:449405/140‑1 (MQ=255)

                                                                   gACCAATAAAACAAATTATGCAATTTTTTAGTTGAATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTa                                                           >  2:539258/1‑140 (MQ=255)

                                                                     ccAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGt                                                         <  1:307058/140‑1 (MQ=255)

                                                                     ccAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGt                                                         <  2:1236176/140‑1 (MQ=255)

                                                                     acAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGt                                                         <  2:878150/139‑1 (MQ=255)

                                                                       aaTAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCg                                                       <  1:480917/140‑1 (MQ=255)

                                                                        aTAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGt                                                         >  2:271837/1‑137 (MQ=255)

                                                                        aTAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGt                                                         <  1:271837/137‑1 (MQ=255)

                                                                        aTAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCgg                                                      >  1:2139225/1‑140 (MQ=255)

                                                                        aTAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCgg                                                      <  1:1373374/140‑1 (MQ=255)

                                                                         tAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGc                                                     >  2:846561/1‑140 (MQ=255)

                                                                          aaaaCAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAACGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCa                                                    <  2:1186775/140‑1 (MQ=255)

                                                                               aaaTTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATc                                               <  2:1016899/140‑1 (MQ=255)

                                                                                aaTTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCa                                              >  1:1214418/1‑140 (MQ=255)

                                                                                 aTTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCaa                                             >  1:1421707/1‑140 (MQ=255)

                                                                                     tGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTcc                                         >  2:1202211/1‑140 (MQ=255)

                                                                                           tttttAGTTGCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTggg                                   <  2:451876/140‑1 (MQ=255)

                                                                                                    gCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAg                          <  2:1188647/140‑1 (MQ=255)

                                                                                                    gCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAg                          <  2:1421707/140‑1 (MQ=255)

                                                                                                    gCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAg                          <  1:1283368/140‑1 (MQ=255)

                                                                                                    gCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAg                          <  1:1897738/140‑1 (MQ=255)

                                                                                                    gCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAg                          <  1:990691/140‑1 (MQ=255)

                                                                                                    gCATGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAg                          <  1:884322/140‑1 (MQ=255)

                                                                                                       tGAACTCGCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCgg                       <  2:879898/140‑1 (MQ=255)

                                                                                                              gCATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAgg                <  1:496149/140‑1 (MQ=255)

                                                                                                               cATGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAggg               >  2:224358/1‑140 (MQ=255)

                                                                                                                 tGTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAg             <  2:14147/140‑1 (MQ=255)

                                                                                                                  gTCTCCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCTGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGc            <  1:1145633/140‑1 (MQ=255)

                                                                                                                   tctcCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCa           <  1:942389/140‑1 (MQ=255)

                                                                                                                    ctcCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAg          >  2:941748/1‑140 (MQ=255)

                                                                                                                     tcCATAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGa         >  1:1515683/1‑140 (MQ=255)

                                                                                                                        aTAGAATGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTg      >  2:1974488/1‑140 (MQ=255)

                                                                                                                            aaTGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAATGGAGCAGACTGTaaa  >  1:1381561/1‑140 (MQ=255)

                                                                                                                            aaTGAGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTaaa  <  1:539258/140‑1 (MQ=255)

TGATGTTGAAAAAGTGTGCTAATCTGCCCTCCGTTCGGCTGTTTCTTCATCGTGTCGCATAAAATGTGACCAATAAAACAAATTATGCAATTTTTTAGTTGCATGAACTCGCATGTCTCCATAGAATGCGCGCTACTTGATGCCGACTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATCAAGTCCGGTGGGGTTCCCGAGCGGCCAAAGGGAGCAGACTGTAAA  >  NC_000913/4175247‑4175510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A