Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F48 I1 R1
|
508 |
125.6 |
4303852 |
99.2% |
4269421 |
139.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,279,933 |
C→G |
intergenic (+105/‑47) |
ghxP → / → yjcE |
guanine/hypoxanthine transporter GhxP/putative transporter YjcE |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,279,933 | 0 | C | G | 99.2%
| 469.0
/ ‑3.6
| 119 | intergenic (+105/‑47) | ghxP/yjcE | guanine/hypoxanthine transporter GhxP/putative transporter YjcE |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base G (55/63); total (55/64) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.78e-01 |
Only 100 of 122 total aligned reads displayed.
TGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATCCCGCT > NC_000913/4279794‑4280068
|
tGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGc > 2:110030/1‑140 (MQ=255)
tGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATa < 2:1198328/140‑1 (MQ=255)
tGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATa < 2:1951474/140‑1 (MQ=255)
ccTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACg < 1:1309886/140‑1 (MQ=255)
cTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGt > 1:717916/1‑140 (MQ=255)
ttCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTc < 2:1198127/140‑1 (MQ=255)
aTGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTtc > 1:1078456/1‑140 (MQ=255)
aTGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTtc > 2:2074322/1‑140 (MQ=255)
tGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTtct < 2:2060478/140‑1 (MQ=255)
cGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCa < 2:1580569/140‑1 (MQ=255)
ggTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACg < 1:385205/129‑1 (MQ=255)
ggTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACg > 2:385205/1‑129 (MQ=255)
ggTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGa > 1:1143472/1‑140 (MQ=255)
ggTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGa > 1:1915142/1‑140 (MQ=255)
gTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATa < 1:914918/125‑1 (MQ=255)
gTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGAt > 1:150314/1‑140 (MQ=255)
gTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGAt > 2:2038776/1‑140 (MQ=255)
tGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATc > 1:169298/1‑140 (MQ=255)
ggCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCa > 2:1951866/1‑140 (MQ=255)
tGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATaa > 1:482902/1‑140 (MQ=255)
tATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAAc < 1:1521777/140‑1 (MQ=255)
tattCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCg < 1:1090573/137‑1 (MQ=255)
tAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCg < 2:74192/140‑1 (MQ=255)
aaTCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGc < 1:148248/140‑1 (MQ=255)
aaTCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGc < 1:353735/140‑1 (MQ=255)
tttCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAAc > 2:1378942/1‑140 (MQ=255)
cATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCaaa > 1:1933976/1‑136 (MQ=255)
cATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCaaa < 2:1933976/136‑1 (MQ=255)
cATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAgg > 1:784199/1‑140 (MQ=255)
cATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAgg > 1:755401/1‑140 (MQ=255)
cATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAgg > 1:722736/1‑140 (MQ=255)
cATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAgg > 1:1064260/1‑140 (MQ=255)
cATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAgg > 1:1544680/1‑140 (MQ=255)
tCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGa < 1:2074322/140‑1 (MQ=255)
aTTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGc > 2:1390820/1‑140 (MQ=255)
ttCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCa < 2:1391572/140‑1 (MQ=255)
ttCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCa < 2:842761/140‑1 (MQ=255)
aaaCGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGaaa < 1:208406/140‑1 (MQ=255)
aaaCGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGaaa < 1:660596/140‑1 (MQ=255)
cGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAAtct > 1:1113062/1‑140 (MQ=255)
gggTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAAtctt < 2:1064260/140‑1 (MQ=255)
gggTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAAtctt > 2:2128583/1‑140 (MQ=255)
aggTGGCAATGGCTGCCAGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAAtctt < 2:869067/139‑1 (MQ=255)
ggTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAAtcttc > 2:1550322/1‑140 (MQ=255)
gTGACAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAAtcttct < 1:106805/140‑1 (MQ=255)
tGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAAtctt > 1:1937101/1‑137 (MQ=255)
tGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAAtctt < 2:1937101/137‑1 (MQ=255)
tGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATcttctt < 1:1051413/140‑1 (MQ=255)
tGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATcttctt < 2:1113062/140‑1 (MQ=255)
gCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCa < 1:1390820/140‑1 (MQ=255)
gCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCa > 2:51020/1‑140 (MQ=255)
gCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCa < 1:1116491/140‑1 (MQ=255)
cAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCAc < 2:784199/140‑1 (MQ=255)
aaTGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCAcc < 2:169339/140‑1 (MQ=255)
aaTGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCAcc < 1:1139467/140‑1 (MQ=255)
aaTGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCAcc < 1:2038776/140‑1 (MQ=255)
aTGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCa < 2:1143472/140‑1 (MQ=255)
ggCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATa < 2:1544680/140‑1 (MQ=255)
gCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATAc < 1:61502/140‑1 (MQ=255)
cTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACt > 2:1735362/1‑140 (MQ=255)
cccGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGAt > 1:466612/1‑140 (MQ=255)
tcCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑t > 2:1633752/1‑140 (MQ=255)
tcCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑t > 1:1812406/1‑140 (MQ=255)
cGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTgg < 2:1194058/137‑1 (MQ=255)
cGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTgg > 1:1194058/1‑137 (MQ=255)
gCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑tctc < 2:755401/140‑1 (MQ=255)
cacaTTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑tctct > 2:836167/1‑139 (MQ=255)
cacaTTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCg < 1:1550322/140‑1 (MQ=255)
cacaTTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCg < 1:1735362/140‑1 (MQ=255)
cacaTTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCg < 2:1638238/140‑1 (MQ=255)
cacaTTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCg < 2:6030/140‑1 (MQ=255)
cacaTTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCg < 1:1227472/140‑1 (MQ=255)
acaTTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGc > 1:1356312/1‑140 (MQ=255)
tgtgtgAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTc > 2:1880682/1‑140 (MQ=255)
tgtgtgAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTc > 1:192449/1‑140 (MQ=255)
tgtgtgAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTc > 2:394394/1‑140 (MQ=255)
tgtgtgAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTc > 1:499312/1‑140 (MQ=255)
gtgtgAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTcc > 2:691462/1‑140 (MQ=255)
tgtgAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCg < 1:691462/140‑1 (MQ=255)
aGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGggt > 2:4942/1‑140 (MQ=255)
gCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGggtg > 2:433580/1‑140 (MQ=255)
cTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGggtgg > 2:838789/1‑140 (MQ=255)
ttttGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGggtggt < 2:1078456/140‑1 (MQ=255)
tttGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGGTCTCTCGCTGTCCGGggtgg > 2:299151/1‑140 (MQ=255)
ttGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCa < 2:722736/140‑1 (MQ=255)
tGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCAc > 2:201473/1‑140 (MQ=255)
tGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCAc > 1:409146/1‑140 (MQ=255)
tGCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCAc > 2:1939541/1‑140 (MQ=255)
gCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCACt < 2:125424/140‑1 (MQ=255)
gCGATATTCTGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCACt < 1:2128583/140‑1 (MQ=255)
tGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCACTCGTGTCATg < 2:1812406/140‑1 (MQ=255)
tGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCACTCGTGTCATg < 2:499312/140‑1 (MQ=255)
tGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCACTCGTGTCATg < 1:1880682/140‑1 (MQ=255)
tGAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCACTCGTGTCATg < 1:834522/140‑1 (MQ=255)
gAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCACTCGTGTCATGc < 1:742437/140‑1 (MQ=255)
gAAAAAAATGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCACTCGTGTCATGc < 1:51020/140‑1 (MQ=255)
aaaaaaaTGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCACTCGTGTCATGcc < 2:1415250/140‑1 (MQ=255)
aaTGAGAATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTc > 1:382/1‑140 (MQ=255)
agaATTCAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGAt < 1:394394/140‑1 (MQ=255)
cAGGGATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATCccgct > 1:1164618/1‑140 (MQ=255)
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TGGTGACCTTCTATGCGGGTGGCTGGGCTATCTAATCTTTCATCGGATTCTGAAAACGGGTGGCAATGGCTGCCCGTTTTTATTTTCTCCGCACATTGTGTGAGCTTTTGCGATATTCTGAAAAAAATGAGAATTCAGGCATAACGTCTTTCTCAGATCATAAAAAACATCGCAAACAGGGAACGCATGGAAATCTTCTTCACCATACTGATAATGACCCTCGTGG‑‑TCTCGCTGTCCGGGGTGGTCACTCGTGTCATGCCCTTTCAGATCCCGCT > NC_000913/4279794‑4280068
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
