Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,361,266 C→A V223V (GTG→GTT)  cadC ← DNA‑binding transcriptional activator CadC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,361,2660CA100.0% 528.4 / NA 152V223V (GTG→GTT) cadCDNA‑binding transcriptional activator CadC
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (79/73);  total (79/73)

Only 100 of 155 total aligned reads displayed.

GCACGGTATTGGCGCTGATTAACAAACGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAA  >  NC_000913/4361129‑4361401
                                                                                                                                         |                                                                                                                                       
gCACGGTATTGGCGCTGATTAACAAACGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAAc                                                                                                                                       >  2:610322/1‑140 (MQ=255)
 cACGGTATTGGCGCTGATTAACAAACGCAATAGATAATGCTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACg                                                                                                                                      >  2:1593210/1‑140 (MQ=255)
 aaCGGTATTGGCGCTGATTAACAAACGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACg                                                                                                                                      <  2:647210/139‑1 (MQ=255)
    ggTATTGGCGCTGATTAACAAACGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCt                                                                                                                                   >  2:1408233/1‑140 (MQ=255)
    ggTATTGGCGCTGATTAACAAACGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCt                                                                                                                                   >  1:1525590/1‑140 (MQ=255)
     gTATTGGCGCTGATTAACAAACGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTa                                                                                                                                  <  1:1358183/140‑1 (MQ=255)
      tATTGGCGCTGATTAACAAACGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTAt                                                                                                                                 >  2:193190/1‑140 (MQ=255)
          ggCGGTGATTAACAAACGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATcgcg                                                                                                                             <  2:2095032/140‑1 (MQ=255)
              cTGATTAACAAACGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAag                                                                                                                         <  1:158741/140‑1 (MQ=255)
              cTGATTAACAAACGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAag                                                                                                                         <  2:1414248/140‑1 (MQ=255)
                gATTAACAAACGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGCAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAagag                                                                                                                       >  2:2103609/1‑140 (MQ=255)
                gATTAACAAACGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGTCACCAAATCACCAACGCCTATCGCGTAagag                                                                                                                       >  1:1474695/1‑140 (MQ=255)
                gATTAACAAACGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAagag                                                                                                                       >  2:1521607/1‑140 (MQ=255)
                gATTAACAAACGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAagag                                                                                                                       >  2:1617439/1‑140 (MQ=255)
                gATTAACAAACGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAagag                                                                                                                       >  2:1752820/1‑140 (MQ=255)
                gATTAACAAACGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGCTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAagag                                                                                                                       >  2:1615809/1‑140 (MQ=255)
                          cGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACg                                                                                                             <  1:610322/140‑1 (MQ=255)
                           gCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTaa                                                                                                                          <  2:460732/126‑1 (MQ=255)
                           gCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACgg                                                                                                            >  1:178759/1‑140 (MQ=255)
                             aaTAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACgggg                                                                                                          <  1:2127959/140‑1 (MQ=255)
                             aaTAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACgggg                                                                                                          <  2:656060/140‑1 (MQ=255)
                               tAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTaa                                                                                                                          <  2:519638/122‑1 (MQ=255)
                               tAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGAAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTaa                                                                                                                          >  1:519638/1‑122 (MQ=255)
                                         tttACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGt                                                                                              >  1:966331/1‑140 (MQ=255)
                                         tttACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGt                                                                                              >  1:302856/1‑140 (MQ=255)
                                         tttACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGt                                                                                              >  1:2099343/1‑140 (MQ=255)
                                          ttACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGtt                                                                                             <  1:403488/140‑1 (MQ=255)
                                           tACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTa                                                                                            >  2:1910960/1‑140 (MQ=255)
                                           tACCGGAACTGCTCGGTTCAACAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGCGGAGAAGGGGTTAAGTGATGTCGCCACCAAATTACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTa                                                                                            >  2:2018764/1‑140 (MQ=255)
                                            aCCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTAc                                                                                           <  2:1474695/140‑1 (MQ=255)
                                            aCCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTAc                                                                                           <  1:333319/140‑1 (MQ=255)
                                             acGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACa                                                                                          <  2:1078258/139‑1 (MQ=255)
                                              cGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACaa                                                                                         <  1:1159348/140‑1 (MQ=255)
                                                gAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACt                                                                                       <  2:1052067/140‑1 (MQ=255)
                                                      cTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTtttatt                                                                                 >  1:69518/1‑140 (MQ=255)
                                                      cTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTtttatt                                                                                 <  2:178759/140‑1 (MQ=255)
                                                      cTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTtttatt                                                                                 >  2:806874/1‑140 (MQ=255)
                                                      cTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTtttatt                                                                                 <  1:445493/140‑1 (MQ=255)
                                                      cTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTtttatt                                                                                 >  2:276700/1‑140 (MQ=255)
                                                      cTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTtttatt                                                                                 <  1:1559523/140‑1 (MQ=255)
                                                      cTCGGTTCATCAATGTTGTAGCTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGAATGAGAGCTGTTACGGGGAACTCCAGCTGTTACAACTtttatt                                                                                 >  2:928467/1‑140 (MQ=255)
                                                        cGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTtttattta                                                                               <  2:1878478/140‑1 (MQ=255)
                                                        cGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTtttattta                                                                               <  1:1408233/140‑1 (MQ=255)
                                                        cGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTtttattta                                                                               <  2:2067198/140‑1 (MQ=255)
                                                         ggTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCTCCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTAc                                                                              <  1:1230847/140‑1 (MQ=255)
                                                          gTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTAcc                                                                             <  1:1910960/140‑1 (MQ=255)
                                                          gTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTAcc                                                                             <  1:1504583/140‑1 (MQ=255)
                                                           ttCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCa                                                                            >  2:1733061/1‑140 (MQ=255)
                                                               tcaATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATAtt                                                                        <  1:193190/140‑1 (MQ=255)
                                                               tcaATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATAtt                                                                        <  1:760704/140‑1 (MQ=255)
                                                               tcaATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATAtt                                                                        <  1:1188192/140‑1 (MQ=255)
                                                               tcaATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATAtt                                                                        <  2:350189/140‑1 (MQ=255)
                                                               tcaATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATAtt                                                                        <  1:2103609/140‑1 (MQ=255)
                                                                   tgttgtAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTAcc                                                                             <  2:848827/131‑1 (MQ=255)
                                                                   tgttgtAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTAcc                                                                             >  1:848827/1‑131 (MQ=255)
                                                                     ttgtAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTc                                                                  >  2:2045484/1‑140 (MQ=255)
                                                                     ttgtAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTc                                                                  >  2:1135656/1‑140 (MQ=255)
                                                                     ttgtAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTc                                                                  >  1:1161696/1‑140 (MQ=255)
                                                                        tAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAat                                                               <  1:1733061/140‑1 (MQ=255)
                                                                        tAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAat                                                               <  2:697329/140‑1 (MQ=255)
                                                                        tAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAat                                                               <  2:896149/140‑1 (MQ=255)
                                                                        tAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAat                                                               <  2:1528334/140‑1 (MQ=255)
                                                                        aaGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCATAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAat                                                               <  2:196186/139‑1 (MQ=255)
                                                                        aaGTTGATTTTGCCATGCACCATAAAGGTGGAGAAGGCGTTAATTGCTGTCGCCACCAAATCACCAGCGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCact                                                               >  2:1228278/2‑138 (MQ=255)
                                                                          gTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAatat                                                             >  2:2142533/1‑140 (MQ=255)
                                                                          gTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAatat                                                             <  1:1446310/140‑1 (MQ=255)
                                                                             gATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATcgc                                                          >  1:495800/1‑140 (MQ=255)
                                                                              aTTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACTGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATcgcg                                                         >  1:2103131/1‑140 (MQ=255)
                                                                                  tGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGa                                                     <  2:69518/140‑1 (MQ=255)
                                                                                  tGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGa                                                     <  1:276700/140‑1 (MQ=255)
                                                                                  tGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGa                                                     <  2:1148360/140‑1 (MQ=255)
                                                                                    tCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGAtt                                                   >  2:190136/1‑140 (MQ=255)
                                                                                       tGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGGGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAg                                                <  1:713756/140‑1 (MQ=255)
                                                                                         cACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCa                                              >  2:2133678/1‑140 (MQ=255)
                                                                                              tAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATa                                         >  2:504108/1‑140 (MQ=255)
                                                                                                   gTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGa                                    >  2:1864237/1‑140 (MQ=255)
                                                                                                    tGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGAt                                   <  1:1465350/140‑1 (MQ=255)
                                                                                                    tGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGAt                                   <  2:1787667/140‑1 (MQ=255)
                                                                                                    tGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGAt                                   <  2:553184/140‑1 (MQ=255)
                                                                                                      gagaAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGAttt                                 >  1:1560021/1‑140 (MQ=255)
                                                                                                      gagaAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGAttt                                 >  2:1838572/1‑140 (MQ=255)
                                                                                                      gagaAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGAttt                                 >  1:1932641/1‑140 (MQ=255)
                                                                                                      gagaAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGAttt                                 >  1:284783/1‑140 (MQ=255)
                                                                                                      gagaAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGAttt                                 >  2:43193/1‑140 (MQ=255)
                                                                                                      gagaAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGAttt                                 >  1:1311345/1‑140 (MQ=255)
                                                                                                      gagaAGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGAttt                                 >  1:1339415/1‑140 (MQ=255)
                                                                                                          aGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTc                             >  2:1299557/1‑140 (MQ=255)
                                                                                                          aGGTGTTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTc                             <  1:1135656/140‑1 (MQ=255)
                                                                                                            gtgtTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTCAt                           >  2:1580033/1‑140 (MQ=255)
                                                                                                             tgtTAAGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTCATa                          >  1:898842/1‑140 (MQ=255)
                                                                                                                 aaGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTCATAGGaa                      <  1:1838572/140‑1 (MQ=255)
                                                                                                                  aGTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTCATAGGAAg                     <  1:504108/140‑1 (MQ=255)
                                                                                                                   gTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTCATAGGAAGa                    <  1:1802134/140‑1 (MQ=255)
                                                                                                                   gTGATGTCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTCATAGGAAGa                    <  2:756350/140‑1 (MQ=255)
                                                                                                                         tCGCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTCATAGGAAGACGTGTa              >  2:440076/1‑140 (MQ=255)
                                                                                                                           gCCACCAAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTCATAGGAAGACGTGTATc            <  1:1580033/140‑1 (MQ=255)
                                                                                                                            ccaccaAATCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTCATAGGAAGACGTGTATCa           >  1:2066537/1‑140 (MQ=255)
                                                                                                                                  aaTCACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACtt     >  1:859414/1‑140 (MQ=255)
                                                                                                                                     cACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGaa  >  1:1034021/1‑140 (MQ=255)
                                                                                                                                     cACCAACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGaa  <  1:70321/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
GCACGGTATTGGCGCTGATTAACAAACGCAATAGATAATGTTTTACCGGAACTGCTCGGTTCATCAATGTTGTAGTTGATTTTGTCATGCACCATAAAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAA  >  NC_000913/4361129‑4361401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A