Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,364,660	C→A	C128F (TGT→TTT)	dsbD ←	protein disulfide oxidoreductase ‑ DsbDreduced

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,364,660	0	C	A	100.0%	397.7 / NA	114	C128F (TGT→TTT)	dsbD	protein disulfide oxidoreductase ‑ DsbDreduced
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (59/55); total (59/55)

Only 100 of 114 total aligned reads displayed.

GATCAACAACGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAACAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTCATGCCAGA  >  NC_000913/4364524‑4364795

gATCAACAACGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGa                                                                                                                                      >  1:1470119/1‑140 (MQ=255)

gATCAACAACGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGa                                                                                                                                      >  1:1755413/1‑140 (MQ=255)

gATCAACAACGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGa                                                                                                                                      >  2:1032444/1‑140 (MQ=255)

 aTCAACAACGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGaa                                                                                                                                     >  1:1753577/1‑140 (MQ=255)

 aTCAACAACGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGaa                                                                                                                                     >  2:1804546/1‑140 (MQ=255)

 aTCAACAACGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGaa                                                                                                                                     >  2:108297/1‑140 (MQ=255)

 aTCAACAACGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGaa                                                                                                                                     >  2:1025794/1‑140 (MQ=255)

 aTCAACAACGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGaa                                                                                                                                     >  1:2033781/1‑140 (MQ=255)

 aTCAACAACGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGaa                                                                                                                                     >  1:1335643/1‑140 (MQ=255)

 aTCAACAACGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGaa                                                                                                                                     >  1:465700/1‑140 (MQ=255)

  tCAACAACGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGaaa                                                                                                                                    >  1:1243591/1‑140 (MQ=255)

  tCAACAACGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGaaa                                                                                                                                    >  1:1551303/1‑140 (MQ=255)

  tCAACAACGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGaaa                                                                                                                                    >  2:1064480/1‑140 (MQ=255)

   caacaaCGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAAc                                                                                                                                   >  2:942334/1‑140 (MQ=255)

    aacaacGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAAcc                                                                                                                                  <  1:345691/140‑1 (MQ=255)

    aacaacGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAAcc                                                                                                                                  >  1:600209/1‑140 (MQ=255)

      caacGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCgg                                                                                                                                >  1:2081750/1‑140 (MQ=255)

      caacGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCgg                                                                                                                                >  1:1060116/1‑140 (MQ=255)

         cGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCAt                                                                                                                             <  1:1032444/140‑1 (MQ=255)

             cAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGc                                                                                                                         <  1:942334/140‑1 (MQ=255)

              agagCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGca                                                                                                                        <  2:600209/140‑1 (MQ=255)

              agagCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGca                                                                                                                        <  2:1586479/140‑1 (MQ=255)

              agagCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGca                                                                                                                        <  2:887758/140‑1 (MQ=255)

              agagCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGca                                                                                                                        <  2:1428111/140‑1 (MQ=255)

              agagCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGca                                                                                                                        >  1:931901/1‑140 (MQ=255)

              agagCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGca                                                                                                                        <  2:1243591/140‑1 (MQ=255)

              agagCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGca                                                                                                                        <  1:1064480/140‑1 (MQ=255)

              agagCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGca                                                                                                                        <  1:1370340/140‑1 (MQ=255)

              agagCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGca                                                                                                                        <  1:1060560/140‑1 (MQ=255)

              agagCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAAACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGca                                                                                                                        <  1:663124/140‑1 (MQ=255)

                agCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGcaca                                                                                                                      >  1:574866/1‑140 (MQ=255)

                agCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGcaca                                                                                                                      >  2:1027275/1‑140 (MQ=255)

                agCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGcaca                                                                                                                      >  2:1260251/1‑140 (MQ=255)

                agCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGcaca                                                                                                                      <  2:1060116/140‑1 (MQ=255)

                    cgGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGccc                                                                                                                  <  2:373993/140‑1 (MQ=255)

                    cgGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGccc                                                                                                                  >  1:1058633/1‑140 (MQ=255)

                    cgGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGccc                                                                                                                  <  2:1470119/140‑1 (MQ=255)

                    cgGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGccc                                                                                                                  <  1:733623/140‑1 (MQ=255)

                        aaaGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGt                                                                                                              <  2:887514/140‑1 (MQ=255)

                        aaaGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGt                                                                                                              <  2:1654417/140‑1 (MQ=255)

                         aaGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTa                                                                                                             <  1:463109/140‑1 (MQ=255)

                            ggCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGt                                                                                                          >  2:1745232/1‑140 (MQ=255)

                             gCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTg                                                                                                         <  1:424224/140‑1 (MQ=255)

                                      cgGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTAGTAGGTGACAGTTAAc                                                                                                >  1:801959/1‑140 (MQ=255)

                                        gTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGt                                                                                              <  2:465700/140‑1 (MQ=255)

                                              tgctCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTcc                                                                                        >  2:631308/1‑140 (MQ=255)

                                               gctCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTccc                                                                                       <  1:1574420/140‑1 (MQ=255)

                                                  ctTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCa                                                                                    <  2:574866/140‑1 (MQ=255)

                                                  ctTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCa                                                                                    <  2:1755413/140‑1 (MQ=255)

                                                     gctgcGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTc                                                                                 >  1:704726/1‑140 (MQ=255)

                                                      ctgcGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCg                                                                                >  2:1612578/1‑140 (MQ=255)

                                                       tgcGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGc                                                                               <  2:2081750/140‑1 (MQ=255)

                                                       tgcGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGCAGGTGACAGTTAACGTCGCTCCCGCACTCGc                                                                               >  1:1810120/1‑140 (MQ=255)

                                                          ggAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTg                                                                            >  1:1788099/1‑140 (MQ=255)

                                                           gAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCa                                                                                    <  1:222348/131‑1 (MQ=255)

                                                           gAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCa                                                                                    >  2:222348/1‑131 (MQ=255)

                                                               aGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGa                                                                       <  1:1260251/140‑1 (MQ=255)

                                                               aGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGa                                                                       <  1:1140574/140‑1 (MQ=255)

                                                                     aGGCTGTGGTGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGa                                                                 <  1:1429593/140‑1 (MQ=255)

                                                                      ggCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGAc                                                                >  1:43239/1‑140 (MQ=255)

                                                                        cTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACgg                                                              >  2:687839/1‑140 (MQ=255)

                                                                        cTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACgg                                                              >  2:1412849/1‑140 (MQ=255)

                                                                        cTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGACTGGTTGATGGTGACgg                                                              >  1:1668978/1‑140 (MQ=255)

                                                                           tgGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGaa                                                           >  1:411297/1‑140 (MQ=255)

                                                                           tgGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGaa                                                           >  2:1255590/1‑140 (MQ=255)

                                                                           tgGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGaa                                                           >  1:2068385/1‑140 (MQ=255)

                                                                            ggCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAg                                                          <  2:35886/140‑1 (MQ=255)

                                                                                 tGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCa                                                     >  2:1164848/1‑140 (MQ=255)

                                                                                 tGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCa                                                     >  1:1662560/1‑140 (MQ=255)

                                                                                    gttgttGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGcc                                                  <  2:609977/140‑1 (MQ=255)

                                                                                     ttgttgGCGACCACTTTGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCg                                                 >  2:107304/1‑140 (MQ=255)

                                                                                     ttgttgGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCg                                                 >  1:816026/1‑140 (MQ=255)

                                                                                     ttgttgGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCg                                                 >  1:104482/1‑140 (MQ=255)

                                                                                      tgttgGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGa                                                <  2:2033781/140‑1 (MQ=255)

                                                                                       gttgGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGAt                                               <  2:411297/140‑1 (MQ=255)

                                                                                       gttgGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGAt                                               <  2:14235/140‑1 (MQ=255)

                                                                                             gACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGt                                         <  2:1753577/140‑1 (MQ=255)

                                                                                             gACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGt                                         >  1:1279575/1‑140 (MQ=255)

                                                                                                 aCTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAAt                                     <  1:1027275/140‑1 (MQ=255)

                                                                                                  cTTCGCTTAACGGAACGGTTTTGGTTTTTGGTGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAAtc                                    >  1:1539180/1‑140 (MQ=255)

                                                                                                  cTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAAtc                                    >  2:815889/1‑140 (MQ=255)

                                                                                                     cGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCg                                 >  2:1903877/1‑140 (MQ=255)

                                                                                                         tAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCttt                             <  2:931901/140‑1 (MQ=255)

                                                                                                         tAACGGAACGGTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCttt                             <  2:704726/140‑1 (MQ=255)

                                                                                                          aaaggaacggTTTTGGTTTCTGTCAGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGGTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCTGTAAATCTCGCtttt                            <  2:1668978/137‑1 (MQ=255)

                                                                                                           acggaacggTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTg                           >  2:937712/1‑140 (MQ=255)

                                                                                                             ggaacggTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGcc                         >  2:302465/1‑140 (MQ=255)

                                                                                                               aacggTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGt                       >  1:1591044/1‑140 (MQ=255)

                                                                                                               aacggTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGt                       >  1:8195/1‑140 (MQ=255)

                                                                                                                acggTTTTGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTa                      <  2:1279575/140‑1 (MQ=255)

                                                                                                                     tttGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACt                 <  2:110371/140‑1 (MQ=255)

                                                                                                                      ttGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTc                <  1:1005235/140‑1 (MQ=255)

                                                                                                                      ttGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTc                <  1:1241891/140‑1 (MQ=255)

                                                                                                                      ttGGTTTCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTc                >  1:1797778/1‑140 (MQ=255)

                                                                                                                          tttCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCt            <  2:8195/140‑1 (MQ=255)

                                                                                                                           ttCTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCtt           <  2:1788099/140‑1 (MQ=255)

                                                                                                                             cTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCttaa         <  1:1903877/140‑3 (MQ=255)

                                                                                                                             cTGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCttaa         <  1:970086/140‑3 (MQ=255)

                                                                                                                              tGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAAt        >  1:1448327/1‑140 (MQ=255)

                                                                                                                                    aTAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGa  <  1:1745232/140‑1 (MQ=255)

GATCAACAACGCCCAGAGCGCGGAAAAGGGCAATTGCGCGGTGGGCTGCTCTTGCTGCGGAACAGACACAGGCTGTGGCGCTGCGTTGTTGGCGACCACTTCGCTTAACGGAACGGTTTTGGTTTCTGGCGGATAACAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTCATGCCAGA  >  NC_000913/4364524‑4364795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A