Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,364,787	C→A	E86* (GAA→TAA)	dsbD ←	protein disulfide oxidoreductase ‑ DsbDreduced

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,364,787	0	C	A	100.0%	313.6 / NA	90	E86* (GAA→TAA)	dsbD	protein disulfide oxidoreductase ‑ DsbDreduced
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (40/50); total (40/50)

TGGCGGATAACAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTCATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGATCTGCCAGGTCAGATTAAGGTCATGTTGGTTTTGCTGAA  >  NC_000913/4364650‑4364921

tGGCGGATAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAAt                                                                                                                                      >  1:1448327/1‑140 (MQ=255)

      aTAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGa                                                                                                                                <  1:1804546/140‑1 (MQ=255)

      aTAAAAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGa                                                                                                                                <  1:1745232/140‑1 (MQ=255)

        aaaaGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACg                                                                                                                              <  2:1797778/137‑1 (MQ=255)

           aGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCt                                                                                                                           <  1:1612578/140‑1 (MQ=255)

              aaCCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGc                                                                                                                        <  2:1551303/140‑1 (MQ=255)

               aCCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCg                                                                                                                       <  2:1473720/140‑1 (MQ=255)

               aCCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCg                                                                                                                       >  2:1344665/1‑140 (MQ=255)

                              gCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCgg                                                                                                        <  1:1412849/140‑1 (MQ=255)

                               cccTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGc                                                                                                                        >  2:792915/1‑123 (MQ=255)

                               cccTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGc                                                                                                                        <  1:792915/123‑1 (MQ=255)

                               cccTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGc                                                                                                       >  1:757963/1‑140 (MQ=255)

                                    gTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAAttt                                                                                                  >  2:2096963/1‑140 (MQ=255)

                                    gTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGACAAttt                                                                                                  >  1:1897355/1‑140 (MQ=255)

                                         tGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTcgct                                                                                             >  2:1861432/1‑139 (MQ=255)

                                         tGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTcgct                                                                                             >  2:576676/1‑139 (MQ=255)

                                         tGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTcgcg                                                                                             >  1:823711/1‑140 (MQ=255)

                                         tGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTcgcg                                                                                             >  2:1054589/1‑140 (MQ=255)

                                         tGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTcgcg                                                                                             >  1:1198978/1‑140 (MQ=255)

                                         tGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTcgcg                                                                                             >  1:972340/1‑140 (MQ=255)

                                         tGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTcgcg                                                                                             >  1:665370/1‑140 (MQ=255)

                                         tGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTcgcg                                                                                             >  1:2083603/1‑140 (MQ=255)

                                             aGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGtt                                                                                         <  2:1448327/140‑1 (MQ=255)

                                             aGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGtt                                                                                         >  1:1381312/1‑140 (MQ=255)

                                              gTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTc                                                                                        <  1:2096963/140‑1 (MQ=255)

                                              gTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTc                                                                                        >  2:107525/1‑140 (MQ=255)

                                              gTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTc                                                                                        <  2:816026/140‑1 (MQ=255)

                                              gTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTc                                                                                        >  1:1730196/1‑140 (MQ=255)

                                              gTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTCGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTc                                                                                        >  2:634762/1‑140 (MQ=255)

                                               ttAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTcc                                                                                       >  1:856859/1‑140 (MQ=255)

                                                  aCGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCTTGTTCCGGc                                                                                    >  2:1795614/1‑140 (MQ=255)

                                                  aCGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGc                                                                                    >  2:775422/1‑140 (MQ=255)

                                                   cGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCg                                                                                   <  1:302465/140‑1 (MQ=255)

                                                   cGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCg                                                                                   <  1:1930932/140‑1 (MQ=255)

                                                   cGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCg                                                                                   <  2:757963/140‑1 (MQ=255)

                                                     tCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTa                                                                                 <  1:775422/140‑1 (MQ=255)

                                                       gCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAAt                                                                               >  1:2008101/1‑140 (MQ=255)

                                                       gCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAAt                                                                               >  1:963309/1‑140 (MQ=255)

                                                        cTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATg                                                                              <  1:107304/140‑1 (MQ=255)

                                                          cccGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCg                                                                            <  1:687839/140‑1 (MQ=255)

                                                            cGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGa                                                                          <  2:1335643/140‑1 (MQ=255)

                                                             gCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGAt                                                                         <  2:1662560/140‑1 (MQ=255)

                                                             gCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGAt                                                                         <  2:1243668/140‑1 (MQ=255)

                                                             gCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGAt                                                                         <  2:665370/140‑1 (MQ=255)

                                                             gCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGAt                                                                         <  2:2068385/140‑1 (MQ=255)

                                                             gCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGAt                                                                         <  2:43239/140‑1 (MQ=255)

                                                             gCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGAt                                                                         <  1:2028045/140‑1 (MQ=255)

                                                             gCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGAt                                                                         <  1:1861432/140‑1 (MQ=255)

                                                             gCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGAt                                                                         <  1:1164848/140‑1 (MQ=255)

                                                             gCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGAt                                                                         <  1:1025794/140‑1 (MQ=255)

                                                             gCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGAt                                                                         <  1:107525/140‑1 (MQ=255)

                                                             gCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGAAATGCGGAt                                                                         <  2:1381312/140‑1 (MQ=255)

                                                             gCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACACATCTTAATGCCAGACGCCTTGCGGCAGCTGCTCGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGAt                                                                         <  1:1054589/140‑1 (MQ=255)

                                                                 tCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGt                                                                     <  2:963309/140‑1 (MQ=255)

                                                                 tCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGt                                                                     <  2:740136/140‑1 (MQ=255)

                                                                   gCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGC‑‑CAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTAc                                                                 >  2:2026707/1‑140 (MQ=255)

                                                                     cTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTCGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTAc                                                                 <  1:634762/140‑1 (MQ=255)

                                                                       ggTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACgg                                                               <  2:823711/140‑1 (MQ=255)

                                                                         ttGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTa                                                             <  1:1255590/140‑1 (MQ=255)

                                                                         ttGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTa                                                             <  2:1591044/140‑1 (MQ=255)

                                                                         ttGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTa                                                             <  2:1058633/140‑1 (MQ=255)

                                                                         ttGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTa                                                             <  2:2008101/140‑1 (MQ=255)

                                                                             tGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAgg                                                         >  2:1522131/1‑140 (MQ=255)

                                                                             tGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAgg                                                         >  1:1369739/1‑140 (MQ=255)

                                                                              ggTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGgt                                                        >  1:564685/1‑140 (MQ=255)

                                                                              ggTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACGCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATTCGGTTCTGTTTACGGTAGAGgt                                                        >  1:749710/1‑140 (MQ=255)

                                                                                 gACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGgtagt                                                     <  1:937712/140‑1 (MQ=255)

                                                                                  aCGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGgtagta                                                    >  2:1403277/1‑140 (MQ=255)

                                                                                  aCGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGgtagta                                                    >  2:288915/1‑140 (MQ=255)

                                                                                  aCGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGgtagta                                                    >  2:322002/1‑140 (MQ=255)

                                                                                  aCGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGgtagta                                                    >  2:335307/1‑140 (MQ=255)

                                                                                   cGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTaa                                                   >  1:461444/1‑140 (MQ=255)

                                                                                    gggAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAAc                                                  <  2:104482/140‑1 (MQ=255)

                                                                                    gggAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAAc                                                  <  2:1730196/140‑1 (MQ=255)

                                                                                             cAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGa                                         <  1:108297/140‑1 (MQ=255)

                                                                                             cAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGa                                         <  2:1810120/140‑1 (MQ=255)

                                                                                             cAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGACAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGa                                         <  2:1897355/140‑1 (MQ=255)

                                                                                               gCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGATc                                       <  2:1539180/140‑1 (MQ=255)

                                                                                                  gATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGATCTGc                                    <  2:1369739/140‑1 (MQ=255)

                                                                                                    tCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGATCTGcc                                   >  2:1717786/1‑139 (MQ=255)

                                                                                                    tCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGATCTGcc                                   <  1:1717786/139‑1 (MQ=255)

                                                                                                    tCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGATCTGc                                    >  1:1494120/1‑138 (MQ=255)

                                                                                                    tCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGATCTGc                                    <  2:1494120/138‑1 (MQ=255)

                                                                                                    tCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGATCTGCCa                                  >  1:813244/1‑140 (MQ=255)

                                                                                                       cgGTAAATCTCGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGATCTGCCAGGt                               <  2:461444/140‑1 (MQ=255)

                                                                                                                 cGCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGATCTGCCAGGTCAGATTAAgg                     <  2:2120113/140‑1 (MQ=255)

                                                                                                                  gCTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGATCTGCCAGGTCAGATTAAGGt                    >  2:2098065/1‑140 (MQ=255)

                                                                                                                   cTTTTGCCGTAAAACTCATCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGATCTGCCAGGTCAGATTAAGGTc                   >  2:1328991/1‑140 (MQ=255)

                                                                                                                                    aTCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGATCTGCCAGGTCAGATTAAGGTCATGTTGGTTTTGCTGaa  >  1:659941/1‑140 (MQ=255)

                                                                                                                                    aTCTTAATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGATCTGCCAGGTCAGATTAAGGTCATGTTGGTTTTGCTGaa  >  1:1226980/1‑140 (MQ=255)

TGGCGGATAACAGAAACCGGCATCAGCACAGCCCTGGTAGGTGACAGTTAACGTCGCTCCCGCACTCGCCTGGTTGATGGTGACGGGAAGCGTCAGCCGATCGCGGTAAATCTCGCTTTTGCCGTAAAACTCATCTTCATGCCAGACGCCTTGCGGCAGCTGCACGTCGGCAATTTTCGCGTGTTCCGGCGTAATGCGGATCTGTTTACGGTAGAGGTAGTAACCGTCTTTGATCTGCCAGGTCAGATTAAGGTCATGTTGGTTTTGCTGAA  >  NC_000913/4364650‑4364921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A