Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,372,597	C→A	P525T (CCG→ACG)	groL →	chaperonin GroEL

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,372,597	0	C	A	100.0%	390.3 / NA	113	P525T (CCG→ACG)	groL	chaperonin GroEL
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (62/51); total (62/51)

Only 100 of 117 total aligned reads displayed.

GCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTT  >  NC_000913/4372462‑4372732

  agcaACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGaaaa                                                                                                                                   >  2:1822174/1‑140 (MQ=255)

   gcaACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGaaaaa                                                                                                                                  >  2:149960/1‑140 (MQ=255)

   gcaACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGaaaaa                                                                                                                                  >  1:1640416/1‑140 (MQ=255)

      aCCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGa                                                                                                                               <  1:1855292/140‑1 (MQ=255)

      aCCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGa                                                                                                                               <  2:879668/140‑1 (MQ=255)

           agaaTACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAg                                                                                                                          <  2:1913360/140‑1 (MQ=255)

                 cGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACt                                                                                                                    >  2:371682/1‑140 (MQ=255)

                     aaCATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAgg                                                                                                                <  2:285004/140‑1 (MQ=255)

                       cATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGgcg                                                                                                              >  2:703980/1‑140 (MQ=255)

                       cATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGgcg                                                                                                              <  1:1472078/140‑1 (MQ=255)

                        aTGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGgcgc                                                                                                             <  1:120084/140‑1 (MQ=255)

                         tGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCgct                                                                                                            <  1:825110/140‑1 (MQ=255)

                          gATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCgctg                                                                                                           <  1:1822174/140‑1 (MQ=255)

                                      tATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATgg                                                                                               >  1:1900947/1‑140 (MQ=255)

                                      tATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATgg                                                                                               >  2:873075/1‑140 (MQ=255)

                                      tATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATgg                                                                                               >  2:1369121/1‑140 (MQ=255)

                                       aTCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATggg                                                                                              <  2:1802348/140‑1 (MQ=255)

                                        tCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGggc                                                                                             >  1:1147270/1‑140 (MQ=255)

                                         ccTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGggcg                                                                                            >  1:1579287/1‑140 (MQ=255)

                                          cTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGggcgg                                                                                           >  1:1153750/1‑140 (MQ=255)

                                           tGGATCGAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGggcggc                                                                                          <  2:1728108/140‑1 (MQ=255)

                                           tGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGggcggc                                                                                          >  1:23559/1‑140 (MQ=255)

                                            ggATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCa                                                                                         <  1:1151230/140‑1 (MQ=255)

                                            ggATCCAACCAAAGTAACTCGTTCTGCTCGGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGAGGAAAAGCGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCa                                                                                         <  2:1503513/140‑1 (MQ=255)

                                             gATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGggcggc                                                                                          <  1:1990998/138‑1 (MQ=255)

                                             gATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGggcggc                                                                                          >  2:1990998/1‑138 (MQ=255)

                                                 caaccaaAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGt                                                                                    <  2:1373722/140‑1 (MQ=255)

                                                  aaccaaAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGAGCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTg                                                                                   >  2:1618582/1‑140 (MQ=255)

                                                  aaccaaAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCATCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTg                                                                                   >  2:1751068/1‑140 (MQ=255)

                                                  aaccaaAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTg                                                                                   >  2:1607246/1‑140 (MQ=255)

                                                  aaccaaAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTg                                                                                   >  2:1079455/1‑140 (MQ=255)

                                                  aaccaaAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTg                                                                                   >  1:90049/1‑140 (MQ=255)

                                                  aaccaaAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCAGCATGGGTg                                                                                   >  2:1328030/1‑140 (MQ=255)

                                                    ccaaAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGc                                                                                 <  1:1644327/140‑1 (MQ=255)

                                                    ccaaAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGc                                                                                 <  1:1383856/140‑1 (MQ=255)

                                                       aaGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATg                                                                              >  1:134019/1‑140 (MQ=255)

                                                        aGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATgg                                                                             >  1:1137941/1‑140 (MQ=255)

                                                         gTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATggg                                                                            <  1:371682/140‑1 (MQ=255)

                                                         gTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATggg                                                                            <  1:1369121/140‑1 (MQ=255)

                                                         gTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATggg                                                                            <  2:1900947/140‑1 (MQ=255)

                                                            aCTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGggcgg                                                                         <  1:1103598/140‑1 (MQ=255)

                                                            aCTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGggcgg                                                                         <  1:1009217/140‑1 (MQ=255)

                                                             cTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGggcggc                                                                        >  2:485424/1‑140 (MQ=255)

                                                              tCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCa                                                                       <  1:712160/140‑1 (MQ=255)

                                                                gTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCatg                                                                     <  2:1134558/140‑1 (MQ=255)

                                                                  tctgctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCatgat                                                                   >  2:396333/1‑140 (MQ=255)

                                                                  tctgctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCatgat                                                                   >  2:883836/1‑140 (MQ=255)

                                                                      ctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTaa                                                               <  1:703980/140‑1 (MQ=255)

                                                                      ctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTaa                                                               <  1:1079455/140‑1 (MQ=255)

                                                                      ctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTaa                                                               <  2:1579287/140‑1 (MQ=255)

                                                                      ctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTaa                                                               <  2:1153750/140‑1 (MQ=255)

                                                                      ctctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTaa                                                               <  2:1147270/140‑1 (MQ=255)

                                                                        ctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAAtt                                                             >  1:1073055/1‑140 (MQ=255)

                                                                        ctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAAt                                                              <  1:1584357/139‑1 (MQ=255)

                                                                        ctgcAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAAt                                                              >  2:1584357/1‑139 (MQ=255)

                                                                           cAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCa                                                                       >  2:512835/1‑127 (MQ=255)

                                                                           cAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCa                                                                       <  1:512835/127‑1 (MQ=255)

                                                                              tACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGggcggc                                                                        >  2:876899/1‑123 (MQ=255)

                                                                              tACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGggcggc                                                                        <  1:876899/123‑1 (MQ=255)

                                                                              tACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCtt                                                       >  2:156104/1‑139 (MQ=255)

                                                                                cGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGcc                                                     >  2:1146129/1‑139 (MQ=255)

                                                                                cGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGcc                                                     >  1:814197/1‑139 (MQ=255)

                                                                                cGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCa                                                     >  1:1109058/1‑140 (MQ=255)

                                                                                cGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGACATGGGCGGCATGATGTAATTGCCCTGCa                                                     >  1:2146040/1‑140 (MQ=255)

                                                                                     cTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGGGGCAAGATGTAATTGCCCTGCACCTCg                                                >  1:1340241/1‑140 (MQ=255)

                                                                                     cTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCg                                                <  2:1109058/140‑1 (MQ=255)

                                                                                     cTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCg                                                >  1:336691/1‑140 (MQ=255)

                                                                                     cTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCg                                                >  2:1134189/1‑140 (MQ=255)

                                                                                               tggcCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATaaa                                      >  2:158122/1‑140 (MQ=255)

                                                                                               tggcCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATaaa                                      >  1:647156/1‑140 (MQ=255)

                                                                                                 gcCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATaaaca                                    >  2:1356091/1‑140 (MQ=255)

                                                                                                 gcCTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATaaaca                                    >  2:1758763/1‑140 (MQ=255)

                                                                                                  ccTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGGTGTAATTGCCCTGCACCTCGCAGAAATaaacaa                                   >  1:116458/1‑140 (MQ=255)

                                                                                                  ccTGATGATCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATaaacaa                                   >  1:912823/1‑140 (MQ=255)

                                                                                                     gatgatCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAAcc                                >  2:1222830/1‑140 (MQ=255)

                                                                                                     gatgatCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGCCGGTATGGGCGGCATGGGTGGCATGGGCGGCCTGATGTAATTCCCCTGCACCTCGCAGAAATAAACAAAcc                                >  2:77044/1‑140 (MQ=255)

                                                                                                      atgatCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAAccc                               <  1:1594728/140‑1 (MQ=255)

                                                                                                      atgatCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAAccc                               <  1:883836/140‑1 (MQ=255)

                                                                                                        gatCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAAccccc                             <  1:156104/140‑1 (MQ=255)

                                                                                                        gatCACCACCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAAccccc                             <  1:485424/140‑1 (MQ=255)

                                                                                                          acaccacCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCgg                           <  2:4691/139‑1 (MQ=255)

                                                                                                           caccacCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCggg                          <  2:1340241/140‑1 (MQ=255)

                                                                                                           caccacCGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCggg                          <  1:396333/140‑1 (MQ=255)

                                                                                                            accaccGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGc                         >  1:1096451/1‑140 (MQ=255)

                                                                                                            accaccGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGc                         >  1:2075955/1‑140 (MQ=255)

                                                                                                                ccGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGaa                     <  2:1841284/140‑1 (MQ=255)

                                                                                                                ccGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGaa                     <  2:2075955/140‑1 (MQ=255)

                                                                                                                ccGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGaa                     <  1:1758763/140‑1 (MQ=255)

                                                                                                                ccGAATGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGGGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGaa                     >  2:620089/1‑140 (MQ=255)

                                                                                                                     tGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGaa                     <  1:1932043/135‑1 (MQ=255)

                                                                                                                     tGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGaa                     >  2:1932043/1‑135 (MQ=255)

                                                                                                                     tGCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGtt                >  2:155204/1‑139 (MQ=255)

                                                                                                                      gCATGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCt               <  2:912823/140‑1 (MQ=255)

                                                                                                                        aTGGTTACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTgg             >  2:1374130/1‑140 (MQ=255)

                                                                                                                            ttACCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGt         >  1:1875643/1‑140 (MQ=255)

                                                                                                                              aCCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGttt       >  2:2014487/1‑140 (MQ=255)

                                                                                                                              aCCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGttt       <  2:1640416/140‑1 (MQ=255)

                                                                                                                              aCCGACCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCAGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGttt       <  1:1328030/140‑1 (MQ=255)

                                                                                                                                  aCCTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCt   >  2:1359062/1‑140 (MQ=255)

                                                                                                                                   ccTGACGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCtt  <  2:1096451/140‑1 (MQ=255)

GCAGCAACCGAAGAATACGGCAACATGATCGACATGGGTATCCTGGATCCAACCAAAGTAACTCGTTCTGCTCTGCAGTACGCAGCTTCTGTGGCTGGCCTGATGATCACCACCGAATGCATGGTTACCGACCTGCCGAAAAACGATGCAGCTGACTTAGGCGCTGCTGGCGGTATGGGCGGCATGGGTGGCATGGGCGGCATGATGTAATTGCCCTGCACCTCGCAGAAATAAACAAACCCCCGGGCAGAAATGTCTGGGGGTTTTTCTT  >  NC_000913/4372462‑4372732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A