Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A19 F48 I1 R1	83	81.6	2760494	99.1%	2735649	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,373,926	C→A	L103L (CTG→CTT)	yjeJ ←	protein YjeJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,373,926	0	C	A	100.0%	277.8 / NA	77	L103L (CTG→CTT)	yjeJ	protein YjeJ
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (46/31); total (46/31)

TATTAATTGCATGAATGATTGCTCGCGCCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCCAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCATACTGAAGGTGTGCAGCAGCATCCAGTTTA  >  NC_000913/4373796‑4374061

tattaATTGCATGAATGATTGCTCGCGCCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGGAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTa                                                                                                                                >  1:50384/1‑140 (MQ=255)

  ttaATTGCATGAATGATTGCTCGCGCCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAAc                                                                                                                              >  2:511850/1‑140 (MQ=255)

    aaTTGCATGAATGATTGCTCGCGCCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAAccc                                                                                                                            <  1:308920/140‑1 (MQ=255)

     aTTGCATGAATGATTGCTCGCGCCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCcg                                                                                                                           <  2:593302/140‑1 (MQ=255)

      ttGCATGAATGATTGCTCGCGCCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCcga                                                                                                                          <  1:801981/140‑1 (MQ=255)

          atgaatgaTTGCTCGCGCCAGCATTTCAATCTGCACCTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGAt                                                                                                                      >  1:1323899/1‑140 (MQ=255)

          atgaatgaTTGCTCGCGCCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGAt                                                                                                                      >  1:1020537/1‑140 (MQ=255)

          atgaatgaTTGCTCGCGCCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGAt                                                                                                                      >  2:853495/1‑140 (MQ=255)

          atgaatgaTTGCTCGCGCCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGAt                                                                                                                      >  2:1343659/1‑140 (MQ=255)

            gaatgaTTGCTCGCGCCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTa                                                                                                                    >  1:455724/1‑140 (MQ=255)

              atgaTTGCTCGCGCCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAat                                                                                                                  >  1:1151376/1‑140 (MQ=255)

                gaTTGCTCGCGCCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAatat                                                                                                                <  1:914058/140‑1 (MQ=255)

                gaTTGCTCGCGCCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAatat                                                                                                                <  2:15483/140‑1 (MQ=255)

                 aTTGCTCGCGCCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATc                                                                                                               >  2:1326745/1‑140 (MQ=255)

                   tGCTCGCGCCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCgg                                                                                                             >  1:414704/1‑140 (MQ=255)

                       cgcgCCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCAtt                                                                                                         >  2:123959/1‑140 (MQ=255)

                        gcgcCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCAttt                                                                                                        >  1:439473/1‑140 (MQ=255)

                        gcgcCAGCATTTCAATCTGCAACACATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCAttt                                                                                                        >  1:794308/1‑140 (MQ=255)

                          gcCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCAttttt                                                                                                      >  2:571408/1‑140 (MQ=255)

                               cATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCt                                                                                                 >  1:11037/1‑140 (MQ=255)

                                      aTCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAAc                                                                                          >  2:671149/1‑140 (MQ=255)

                                         tGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAg                                                                                       <  1:671149/140‑1 (MQ=255)

                                         tGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAg                                                                                       <  1:264542/140‑1 (MQ=255)

                                                 aTTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTg                                                                               >  2:108889/1‑140 (MQ=255)

                                                 aTTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTg                                                                               <  1:918781/140‑1 (MQ=255)

                                                     acgacTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGAt                                                                           >  2:387228/1‑140 (MQ=255)

                                                     acgacTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGAt                                                                           >  1:456930/1‑140 (MQ=255)

                                                     acgacTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGAt                                                                           <  1:508973/140‑1 (MQ=255)

                                                         cTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGttt                                                                       >  1:1121453/1‑140 (MQ=255)

                                                          tAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGtttt                                                                      <  2:794308/140‑1 (MQ=255)

                                                                 caTTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCAt                                                               >  1:84787/1‑140 (MQ=255)

                                                                  aTTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCAtt                                                              <  2:252217/140‑1 (MQ=255)

                                                                  aTTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCAtt                                                              >  2:309707/1‑140 (MQ=255)

                                                                    ttGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCAtttt                                                            >  2:790465/1‑140 (MQ=255)

                                                                    ttGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCAtttt                                                            >  1:130941/1‑140 (MQ=255)

                                                                        tACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTa                                                        >  1:182411/1‑140 (MQ=255)

                                                                           cGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATg                                                     <  1:1033238/140‑1 (MQ=255)

                                                                              cATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACt                                                  >  1:723573/1‑140 (MQ=255)

                                                                                    gCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATcg                                            <  1:511850/140‑1 (MQ=255)

                                                                                    gCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATcg                                            <  2:1020537/140‑1 (MQ=255)

                                                                                    gCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATcg                                            >  1:288692/1‑140 (MQ=255)

                                                                                     cGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGCTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATcgc                                           >  1:1168595/1‑140 (MQ=255)

                                                                                       ttAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGa                                         >  1:1284880/1‑140 (MQ=255)

                                                                                       ttAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGa                                         >  2:739739/1‑140 (MQ=255)

                                                                                       ttAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGa                                         >  2:505498/1‑140 (MQ=255)

                                                                                       ttAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGa                                         >  2:1224256/1‑140 (MQ=255)

                                                                                       ttAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGa                                         >  2:1187193/1‑140 (MQ=255)

                                                                                       ttAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCATGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGa                                         >  2:1019203/1‑140 (MQ=255)

                                                                                        tAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAg                                        <  1:571408/140‑1 (MQ=255)

                                                                                        tAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAg                                        <  2:1178191/140‑1 (MQ=255)

                                                                                          aTACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGTCGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCt                                      <  2:536258/140‑1 (MQ=255)

                                                                                          aTACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGTTTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCt                                      >  1:322851/1‑140 (MQ=255)

                                                                                          aTACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCt                                      <  1:330248/140‑1 (MQ=255)

                                                                                          aTACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCt                                      <  1:387228/140‑1 (MQ=255)

                                                                                          aTACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCt                                      <  2:1021934/140‑1 (MQ=255)

                                                                                           tACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCtt                                     <  1:309707/140‑1 (MQ=255)

                                                                                              gAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCt                                  <  2:1284880/140‑1 (MQ=255)

                                                                                              gAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCt                                  <  2:188318/140‑1 (MQ=255)

                                                                                              gAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCt                                  <  1:206184/140‑1 (MQ=255)

                                                                                              gAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCt                                  <  2:272489/140‑1 (MQ=255)

                                                                                                aGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAATCGCGTTAACCCGACGATTGATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGTATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCa                                >  1:325797/1‑140 (MQ=255)

                                                                                                aGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTct                                >  2:1124775/1‑139 (MQ=255)

                                                                                                aGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCa                                >  1:516454/1‑140 (MQ=255)

                                                                                                 ggTAAGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCAt                               >  2:273822/1‑140 (MQ=255)

                                                                                                     aGATTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCATACTg                           >  1:240548/1‑140 (MQ=255)

                                                                                                       aTTTTCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCATACTGaa                         >  2:143074/1‑140 (MQ=255)

                                                                                                        ttttCGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCATACTGAAg                        <  1:123959/140‑1 (MQ=255)

                                                                                                        ttttCGCCTTGATTATCGGTAAGTTCAAGCATGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCATACTGAAg                        <  1:1019203/140‑1 (MQ=255)

                                                                                                            cGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCATACTGAAGgtgt                    >  2:271702/1‑140 (MQ=255)

                                                                                                            cGCCTTGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCATACTGAAGgtgt                    >  2:926549/1‑140 (MQ=255)

                                                                                                                ttGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCATACTGAAGGTGTgcag                <  1:853495/140‑1 (MQ=255)

                                                                                                                 tGATTATCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCATACTGAAGGTGTgcagc               <  2:414704/140‑1 (MQ=255)

                                                                                                                       tCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCATACTGAAGGTGTGCAGCAGCATc         <  2:1119579/140‑1 (MQ=255)

                                                                                                                       tCGGTAAGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCATACTGAAGGTGTGCAGCAGCATc         <  1:591307/140‑1 (MQ=255)

                                                                                                                             aGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCATACTGAAGGTGTGCAGCAGCATCCAGttt   >  2:117078/1‑140 (MQ=255)

                                                                                                                             aGTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCATACTGAAGGTGTGCAGCAGCATCCAGttt   >  2:941334/1‑140 (MQ=255)

                                                                                                                              gTTCAAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCATACTGAAGGTGTGCAGCAGCATCCAGtttt  >  2:154176/1‑139 (MQ=255)

TATTAATTGCATGAATGATTGCTCGCGCCAGCATTTCAATCTGCAACTCATTGACGACTAACTCACATTTGCTACCGTCATGTAGCGTTAATACGAAGGTAAGATTTTCGCCTTGATTATCGGTAAGTTCCAGCGTGTTAACCCGACGATTAATATCGGCATTTTTAAGCTCATCAACCAGAATTTCTGGGATGTTTTCTGCCATTTTCTTAATGACTTTATCGCGAGCTTGCTCATACTGAAGGTGTGCAGCAGCATCCAGTTTA  >  NC_000913/4373796‑4374061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A