Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,426,293	G→T	L62L (CTG→CTT)	rplI →	50S ribosomal subunit protein L9

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,426,293	0	G	T	100.0%	412.0 / NA	118	L62L (CTG→CTT)	rplI	50S ribosomal subunit protein L9
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (51/67); total (51/67)

Only 100 of 118 total aligned reads displayed.

ATCAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTGGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCG  >  NC_000913/4426157‑4426429

aTCAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCa                                                                                                                                       <  1:1641031/140‑1 (MQ=255)

 tCAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAGGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAg                                                                                                                                      >  1:851453/1‑140 (MQ=255)

 tCAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAg                                                                                                                                      <  1:40905/140‑1 (MQ=255)

 tCAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAg                                                                                                                                      <  2:171788/140‑1 (MQ=255)

 tCAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAg                                                                                                                                      >  2:1579902/1‑140 (MQ=255)

 tCAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAg                                                                                                                                      <  1:1862781/140‑1 (MQ=255)

 tCAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAg                                                                                                                                      <  2:1462995/140‑1 (MQ=255)

 tCAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAg                                                                                                                                      <  2:1399573/140‑1 (MQ=255)

 tCAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAg                                                                                                                                      <  2:2087025/140‑1 (MQ=255)

 tCAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAg                                                                                                                                      <  1:994123/140‑1 (MQ=255)

 tCAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGATAAACTGGCTGAAGTTCTTGCAg                                                                                                                                      <  1:1076008/140‑1 (MQ=255)

 acAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGTGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAg                                                                                                                                      <  2:550122/139‑1 (MQ=255)

 acAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAg                                                                                                                                      <  2:773666/139‑1 (MQ=255)

 acAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAg                                                                                                                                      <  2:670573/139‑1 (MQ=255)

  cAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAgc                                                                                                                                     <  2:1822410/140‑1 (MQ=255)

  cAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAgc                                                                                                                                     >  1:543309/1‑140 (MQ=255)

  cAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAgc                                                                                                                                     >  1:1203184/1‑140 (MQ=255)

  cAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAg                                                                                                                                      <  1:1232973/139‑1 (MQ=255)

          cGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATg                                                                                                                             >  2:1521781/1‑140 (MQ=255)

            ttAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCt                                                                                                                           <  1:631432/140‑1 (MQ=255)

               aaGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTcgc                                                                                                                        >  1:1552662/1‑140 (MQ=255)

                aGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACGTTAAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTcgcg                                                                                                                       <  2:1922328/140‑1 (MQ=255)

                aGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTcgcg                                                                                                                       <  2:1870657/140‑1 (MQ=255)

                  cGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCt                                                                                                                     <  1:1909168/140‑1 (MQ=255)

                    ggCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTga                                                                                                                   >  1:1417498/1‑140 (MQ=255)

                     gCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTgag                                                                                                                  <  1:1724412/140‑1 (MQ=255)

                     gCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTgag                                                                                                                  >  1:510531/1‑140 (MQ=255)

                     gCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTgag                                                                                                                  >  1:1067730/1‑140 (MQ=255)

                      cTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTgaga                                                                                                                 <  2:1848096/140‑1 (MQ=255)

                       tATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGaa                                                                                                                <  2:840503/140‑1 (MQ=255)

                          gCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAAt                                                                                                             >  1:1051943/1‑140 (MQ=255)

                            tCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCa                                                                                                           <  1:1433332/140‑1 (MQ=255)

                            tCGTAACTTCCTGGTAACGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCa                                                                                                           <  1:1845864/140‑1 (MQ=255)

                              gTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAAt                                                                                                         <  2:1203184/140‑1 (MQ=255)

                              gTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAAt                                                                                                         <  1:1521781/140‑1 (MQ=255)

                              gTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAAt                                                                                                         <  1:1702496/140‑1 (MQ=255)

                               tAAATTCCTGGTATCGTAGGGTAAAGCTGTTACAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTAGCGCTGAACTGGAAGCTAAACTGGATGAAGTTCTTGCAGCTGGTAATGCTCGCGCTGAGAAAATCAGTg                                                                                                        <  2:1571315/140‑1 (MQ=255)

                                 aCTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCa                                                                                                      <  2:1575542/140‑1 (MQ=255)

                                   ttCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACt                                                                                                    <  1:231337/140‑1 (MQ=255)

                                    tCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTg                                                                                                   <  1:947782/140‑1 (MQ=255)

                                    tCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTg                                                                                                   <  1:31892/140‑1 (MQ=255)

                                     ccTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTgg                                                                                                  >  2:1646052/1‑140 (MQ=255)

                                     ccTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTgg                                                                                                  <  2:1552662/140‑1 (MQ=255)

                                     ccTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTgg                                                                                                  <  2:543309/140‑1 (MQ=255)

                                     ccTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTgg                                                                                                  >  1:2128899/1‑140 (MQ=255)

                                     ccTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATCCACTgg                                                                                                  >  1:202604/1‑140 (MQ=255)

                                      cTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAGGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGa                                                                                                 <  2:851453/140‑1 (MQ=255)

                                      cTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGa                                                                                                 <  1:1135113/140‑1 (MQ=255)

                                       tGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGaa                                                                                                <  2:718201/140‑1 (MQ=255)

                                       tGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGaa                                                                                                <  1:1177145/140‑1 (MQ=255)

                                         gTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAAc                                                                                              <  2:1277545/140‑1 (MQ=255)

                                          tACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACt                                                                                             >  2:1881982/1‑140 (MQ=255)

                                          tACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACt                                                                                             >  1:127524/1‑140 (MQ=255)

                                            ccGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGt                                                                                           >  1:811542/1‑140 (MQ=255)

                                             cGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGtt                                                                                          >  2:871827/1‑140 (MQ=255)

                                               cAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTAc                                                                                        >  1:1302891/1‑140 (MQ=255)

                                               cAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTAc                                                                                        >  1:318876/1‑140 (MQ=255)

                                               cAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTAc                                                                                        >  2:133424/1‑140 (MQ=255)

                                               cAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTAc                                                                                        >  2:705290/1‑140 (MQ=255)

                                                  ggTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATGCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCAt                                                                                     <  2:722590/140‑1 (MQ=255)

                                                   gTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATc                                                                                    <  1:1010162/140‑1 (MQ=255)

                                                   gTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATc                                                                                    <  2:292262/140‑1 (MQ=255)

                                                         cTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCt                                                                              >  1:120721/1‑140 (MQ=255)

                                                            ttCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTaaa                                                                           >  2:1225394/1‑140 (MQ=255)

                                                            ttCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTaaa                                                                           >  2:1351104/1‑140 (MQ=255)

                                                            ttCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTaaa                                                                           >  1:176433/1‑140 (MQ=255)

                                                             tCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAg                                                                          <  1:133424/140‑1 (MQ=255)

                                                                  cTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGc                                                                     <  2:1600048/140‑1 (MQ=255)

                                                                    aCCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGcga                                                                   <  1:1579902/140‑1 (MQ=255)

                                                                      cAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGcgacg                                                                 >  2:117630/1‑140 (MQ=255)

                                                                      cAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGcgacg                                                                 >  1:651980/1‑140 (MQ=255)

                                                                      cAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGcgacg                                                                 <  1:961996/140‑1 (MQ=255)

                                                                      cAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGcgacg                                                                 <  2:1302891/140‑1 (MQ=255)

                                                                         gAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAg                                                              <  2:1986971/140‑1 (MQ=255)

                                                                           aaaaCATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGt                                                            <  2:1113483/140‑1 (MQ=255)

                                                                               cATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAAc                                                        >  1:1026168/1‑140 (MQ=255)

                                                                               cATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAAc                                                        >  2:1297049/1‑140 (MQ=255)

                                                                               cATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAAc                                                        >  1:964035/1‑140 (MQ=255)

                                                                               cATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAAc                                                        >  2:485512/1‑140 (MQ=255)

                                                                                    aaTTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGTTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTc                                                   >  2:406508/1‑140 (MQ=255)

                                                                                    aaTTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTc                                                   <  1:117630/140‑1 (MQ=255)

                                                                                    aaTTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTc                                                   <  2:2128899/140‑1 (MQ=255)

                                                                                       tcttcGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGt                                                <  2:1888159/140‑1 (MQ=255)

                                                                                           cGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAg                                                              >  2:459874/1‑122 (MQ=255)

                                                                                           cGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAg                                                              <  1:459874/122‑1 (MQ=255)

                                                                                            gAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCAt                                           <  1:804208/140‑1 (MQ=255)

                                                                                              aGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCg                                         <  1:1881982/140‑1 (MQ=255)

                                                                                                cTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTTTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGt                                       >  2:733962/1‑140 (MQ=255)

                                                                                                   gtcgCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACt                                    >  1:826125/1‑140 (MQ=255)

                                                                                                   gtcgCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACt                                    >  2:1151929/1‑140 (MQ=255)

                                                                                                                 gAAGCTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGa                      <  2:811542/140‑1 (MQ=255)

                                                                                                                    acTAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGc                   <  2:826125/139‑1 (MQ=255)

                                                                                                                      tAAACTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTg                 >  1:1913785/1‑140 (MQ=255)

                                                                                                                        aaCTGGCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTa               >  1:879000/1‑140 (MQ=255)

                                                                                                                           tGGCTGAAGTTTTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACt            <  1:733962/140‑1 (MQ=255)

                                                                                                                             gCTGAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGc          >  2:591488/1‑140 (MQ=255)

                                                                                                                                gAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGc       <  1:485512/140‑1 (MQ=255)

                                                                                                                                gAAGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGc       <  2:1164384/140‑1 (MQ=255)

                                                                                                                                  aGTTCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTg     >  2:1540561/1‑140 (MQ=255)

                                                                                                                                     tCTTGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCg  >  2:1472728/1‑140 (MQ=255)

ATCAGGTAAACGTTAAAGCGGGCTATGCTCGTAACTTCCTGGTACCGCAGGGTAAAGCTGTTCCAGCTACCAAGAAAAACATTGAATTCTTCGAAGCTCGTCGCGCTGAACTGGAAGCTAAACTGGCTGAAGTTCTGGCAGCTGCTAATGCTCGCGCTGAGAAAATCAATGCACTGGAAACTGTTACCATCGCGTCTAAAGCTGGCGACGAAGGTAAACTGTTCGGTTCCATCGGTACTCGCGACATCGCTGACGCTGTAACTGCAGCTGGCG  >  NC_000913/4426157‑4426429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A