Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F48 I1 R1 45 83.3 2696702 99.2% 2675128 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,113,188 G→T P97Q (CCG→CAG)  yghG ← lipoprotein YghG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,113,1880GT100.0% 276.3 / NA 76P97Q (CCG→CAG) yghGlipoprotein YghG
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (41/35);  total (41/35)

TATATCTACCCGACGTTATGCTTTGACTATTCCACAGGTGGTACGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCGGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAG  >  NC_000913/3113052‑3113313
                                                                                                                                        |                                                                                                                             
tataTCTCCCCGACGTTATGCTTTGACTATTCCACAGGTGGTACGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGt                                                                                                                            <  1:44776/140‑1 (MQ=255)
  tatCTACCCGACGTTATGCTTTGACTATTCCACAGGTGGTACGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCa                                                                                                                          <  1:560830/140‑1 (MQ=255)
       aCCCGACGTTATGCTTTGACTATTCCACAGGTGGTACGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGca                                                                                                                     >  1:1288141/1‑140 (MQ=255)
        cccGACGTTATGCTTTGACTATTCCACAGGTGGTACGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGcat                                                                                                                    >  2:96696/1‑139 (MQ=255)
        cccGACGTTATGCTTTGACTATTCCACAGGTGGTACGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGcac                                                                                                                    >  2:1248418/1‑140 (MQ=255)
        cccGACGTTATGCTTTGACTATTCCACAGGTGGTACGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGcac                                                                                                                    >  2:311449/1‑140 (MQ=255)
          cGACGTTATGCTTTGACTATTCCACAGGTGGTACGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACAt                                                                                                                  <  2:3166/140‑1 (MQ=255)
             cGTTATGCTTTGACTATTCCACAGGTGGTACGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTg                                                                                                               <  2:1064213/140‑1 (MQ=255)
                 aTGCTTTGACTATTCCACAGGTGGTACGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGt                                                                                                           >  2:206990/1‑140 (MQ=255)
                      ttGACTATTCCACAGGTGGTACGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATa                                                                                                      <  2:412876/140‑1 (MQ=255)
                       tGACTATTCCACAGGTGGTGCGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAg                                                                                                     <  1:540298/140‑1 (MQ=255)
                                     gtggtACGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAaggc                                                                                       >  1:964743/1‑140 (MQ=255)
                                       ggtACGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAaggcgt                                                                                     >  2:1240229/1‑140 (MQ=255)
                                        gtACGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAaggcgtc                                                                                    >  1:75951/1‑140 (MQ=255)
                                         tACGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAaggcgtca                                                                                   >  2:328219/1‑140 (MQ=255)
                                         tACGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAaggcgtca                                                                                   >  2:533882/1‑140 (MQ=255)
                                           cGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAaggcgtcagg                                                                                 <  1:328219/140‑1 (MQ=255)
                                               ccAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAaggcgtcaggcgtc                                                                             >  1:344857/1‑140 (MQ=255)
                                               ccAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAaggcgtcaggcgtc                                                                             >  2:211328/1‑140 (MQ=255)
                                               ccAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAaggcgtcaggcgtc                                                                             >  2:499566/1‑140 (MQ=255)
                                                  gTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGc                                                                          >  1:501861/1‑140 (MQ=255)
                                                  gTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGc                                                                          <  1:503831/140‑1 (MQ=255)
                                                   tttCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAATGCGTCAGGCGTCTGCg                                                                         >  2:273108/1‑140 (MQ=255)
                                                   tttCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCg                                                                         >  1:469564/1‑140 (MQ=255)
                                                   tttCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCg                                                                         >  2:990617/1‑140 (MQ=255)
                                                      ccGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTgg                                                                      <  2:789249/140‑1 (MQ=255)
                                                        gCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGtt                                                                    >  1:333164/1‑140 (MQ=255)
                                                        gCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTATCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGtt                                                                    >  1:427824/1‑140 (MQ=255)
                                                               cTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTAc                                                             <  2:344857/140‑1 (MQ=255)
                                                                        tGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGc                                                    <  2:1084252/140‑1 (MQ=255)
                                                                        tGTACGCGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGc                                                    >  2:448244/1‑140 (MQ=255)
                                                                          tACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTg                                                  >  1:1084766/1‑140 (MQ=255)
                                                                            cGTGTATCATTAATCGTTGTGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGAt                                                >  1:1198308/1‑140 (MQ=255)
                                                                            cGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGAt                                                >  2:32419/1‑140 (MQ=255)
                                                                                tATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAAtt                                            >  2:835051/1‑139 (MQ=255)
                                                                                  tCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAATGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGt                                          <  1:1203265/140‑1 (MQ=255)
                                                                                  tCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGt                                          <  1:273108/140‑1 (MQ=255)
                                                                                  tCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGt                                          <  1:443944/140‑1 (MQ=255)
                                                                                  tCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGt                                          <  1:432142/140‑1 (MQ=255)
                                                                                   cATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTc                                         <  2:266903/140‑1 (MQ=255)
                                                                                    aTTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATATCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCa                                        >  1:502435/1‑140 (MQ=255)
                                                                                    aTTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCa                                        >  2:723922/1‑140 (MQ=255)
                                                                                     ttAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCAt                                       >  2:776900/1‑140 (MQ=255)
                                                                                        aTCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCAtttt                                    >  2:814882/1‑140 (MQ=255)
                                                                                        aTCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCAtttt                                    <  2:469564/140‑1 (MQ=255)
                                                                                         tCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCAttttt                                   >  2:8306/1‑140 (MQ=255)
                                                                                              aTGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGt                              >  2:116831/1‑140 (MQ=255)
                                                                                              aTGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGt                              >  1:1341985/1‑140 (MQ=255)
                                                                                                      attaattCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGc                      >  1:37907/1‑140 (MQ=255)
                                                                                                      attaattCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGc                      <  2:212173/140‑1 (MQ=255)
                                                                                                      attaattCCCTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGc                      <  1:776900/140‑1 (MQ=255)
                                                                                                              ccTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTgc              >  2:480303/1‑140 (MQ=255)
                                                                                                              ccTCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTgc              >  1:1214598/1‑140 (MQ=255)
                                                                                                                tCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTgcgc            <  1:8306/140‑1 (MQ=255)
                                                                                                                tCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTgcgc            >  2:371636/1‑140 (MQ=255)
                                                                                                                tCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTgcgc            <  1:211328/140‑1 (MQ=255)
                                                                                                                tCAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTgcgc            <  2:1084766/140‑1 (MQ=255)
                                                                                                                 cAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGcc           <  2:796146/140‑1 (MQ=255)
                                                                                                                 cAGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGcc           <  1:116831/140‑1 (MQ=255)
                                                                                                                  aGTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCa          >  1:907287/1‑140 (MQ=255)
                                                                                                                   gTGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAg         <  1:646886/140‑1 (MQ=255)
                                                                                                                    tGATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGc        >  1:602042/1‑140 (MQ=255)
                                                                                                                     gATCATTAATTTCACCGTCTGGTCAGCGCGCATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCa       <  1:448244/140‑1 (MQ=255)
                                                                                                                     gATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCa       <  2:1198308/140‑1 (MQ=255)
                                                                                                                     gATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCa       <  1:723922/140‑1 (MQ=255)
                                                                                                                     gATCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCa       <  1:371636/140‑1 (MQ=255)
                                                                                                                       tCATTAATTTCACCGTCTGGTCAGCGCCCATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACt     <  1:835051/140‑1 (MQ=255)
                                                                                                                       tCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACt     <  1:96696/140‑1 (MQ=255)
                                                                                                                       tCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACt     <  2:907287/140‑1 (MQ=255)
                                                                                                                       tCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACt     <  2:1341985/140‑1 (MQ=255)
                                                                                                                       tCATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACt     <  2:1214598/140‑1 (MQ=255)
                                                                                                                        cATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTa    >  1:1306045/1‑140 (MQ=255)
                                                                                                                        cATTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTa    >  1:113919/1‑140 (MQ=255)
                                                                                                                         aTTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTaa   >  1:667405/1‑140 (MQ=255)
                                                                                                                         aTTAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTaa   >  1:566268/1‑140 (MQ=255)
                                                                                                                          ttAATTTCACCGTCTGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAg  <  2:465025/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                             
TATATCTACCCGACGTTATGCTTTGACTATTCCACAGGTGGTACGATCCAGTTTCCGCTGATACTGGTTACCTGTACGTGTATCATTAATCGTTATGCTGTAATTAATTCCCTCAGTGATCATTAATTTCACCGTCGGGTCAGCGCACATTTGTCGTTGATAGCTGGTTAAAAAGGCGTCAGGCGTCTGCGTGGTTTGTGTACCCGCTTCGCTGATAATGGTCATTTTTACCGTTGTGCCGCTACTTTGCGCCAGCACTAAG  >  NC_000913/3113052‑3113313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A