Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F48 I1 R1 45 83.3 2696702 99.2% 2675128 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,414,676 C→A G271G (GGC→GGA)  acrE → multidrug efflux pump membrane fusion lipoprotein AcrE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,414,6760CA98.4% 222.8 / ‑2.8 63G271G (GGC→GGA) acrEmultidrug efflux pump membrane fusion lipoprotein AcrE
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base A (25/37);  total (25/38)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.15e-01

AGCAATCCGTAGAGCAAGGAAATTTGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGCTCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCATTCTTATCCCGCAACAAGGCGTTAGCCGCACACCGC  >  NC_000913/3414540‑3414812
                                                                                                                                        |                                                                                                                                        
aGCAATCCGTAGAGCAAGGAAATTTGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATcc                                                                                                                                       <  1:780738/140‑1 (MQ=255)
   aaTCCGTAGAGCAAGGAAATTTGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGCTCCATa                                                                                                                                    <  2:204499/140‑1 (MQ=255)
   aaTCCGTAGAGCAAGGAAATTTGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATa                                                                                                                                    <  2:423502/140‑1 (MQ=255)
     tCCGTAGAGCAAGGAAATTTGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAAc                                                                                                                                  >  2:451986/1‑140 (MQ=255)
     tCCGTAGAGCAAGGAAATTTGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAAc                                                                                                                                  >  2:1236183/1‑140 (MQ=255)
     tCCGTAGAGCAAGGAAATTTGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAAc                                                                                                                                  >  2:351035/1‑140 (MQ=255)
        gTAGAGCAAGGAAATTTGCATAAGGAAAGCGCCACCAGCAACGTAGAGTTGGACATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCt                                                                                                                               <  2:577336/140‑1 (MQ=255)
        gTAGAGCAAGGAAATTTGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCt                                                                                                                               <  1:583634/140‑1 (MQ=255)
        gTAGAGCAAGGAAATTTGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCt                                                                                                                               <  2:87476/140‑1 (MQ=255)
         tAGAGCAAGGAAATTTGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTa                                                                                                                              >  2:236480/1‑140 (MQ=255)
            agCAAGGAAATTTGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGt                                                                                                                           <  1:1279586/140‑1 (MQ=255)
             gCAAGGAAATTTGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTg                                                                                                                          <  1:1317330/140‑1 (MQ=255)
                 ggAAATTTGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGt                                                                                                                      <  2:194193/140‑1 (MQ=255)
                 ggAAATTTGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGt                                                                                                                      <  1:236480/140‑1 (MQ=255)
                 ggAAATTTGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGt                                                                                                                      >  1:596507/1‑140 (MQ=255)
                  gAAATTTGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTc                                                                                                                     <  1:1183683/140‑1 (MQ=255)
                       ttGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTccc                                                                                                                <  1:829942/140‑1 (MQ=255)
                             aaGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAAccc                                                                                                          <  1:1236183/140‑1 (MQ=255)
                              aGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCg                                                                                                         <  2:1101619/140‑1 (MQ=255)
                               ggAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGc                                                                                                        <  1:742036/140‑1 (MQ=255)
                                             gCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTg                                                                                          <  1:138800/140‑1 (MQ=255)
                                             gCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTg                                                                                          <  2:474614/140‑1 (MQ=255)
                                                     gagTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTAt                                                                                  >  2:645152/1‑140 (MQ=255)
                                                        ttGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACTCGCAACATACGCTTTTGCCGGGTATGtt                                                                               >  2:1262628/1‑140 (MQ=255)
                                                           gTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTtgt                                                                            <  2:1052072/140‑1 (MQ=255)
                                                            tCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTtgtg                                                                           <  2:53143/140‑1 (MQ=255)
                                                                ggAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTgtgcgtg                                                                       <  2:596507/140‑1 (MQ=255)
                                                                 gAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTgtgcgtgc                                                                      <  1:1262628/140‑1 (MQ=255)
                                                                 gAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTgtgcgtgc                                                                      <  1:561762/140‑1 (MQ=255)
                                                                 gAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTgtgcgtgc                                                                      >  2:1171109/1‑140 (MQ=255)
                                                                    aaCGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCGCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTATCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGcgcg                                                                   <  2:436007/140‑1 (MQ=255)
                                                                     aCGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACgg                                                                  >  1:434033/1‑140 (MQ=255)
                                                                     aCGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACgg                                                                  >  1:577216/1‑140 (MQ=255)
                                                                              ccTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGaa                                                         <  1:1171109/140‑1 (MQ=255)
                                                                                       tGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCaa                                                >  2:1108698/1‑140 (MQ=255)
                                                                                        gAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAAc                                               >  2:109250/1‑140 (MQ=255)
                                                                                         aaaGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAAcc                                              <  2:484152/140‑1 (MQ=255)
                                                                                         aaaGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAAcc                                              <  2:138741/140‑1 (MQ=255)
                                                                                         aaaGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAAcc                                              <  2:435027/140‑1 (MQ=255)
                                                                                             gTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGAc                                          <  2:1081948/140‑1 (MQ=255)
                                                                                              tACGCTGCAATTCTCCGATGTGACCGTTGATGAAATCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACg                                         >  2:60106/1‑140 (MQ=255)
                                                                                              tACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACg                                         >  2:472678/1‑140 (MQ=255)
                                                                                              tACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACg                                         <  1:645152/140‑1 (MQ=255)
                                                                                              tACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACg                                         <  1:451986/140‑1 (MQ=255)
                                                                                              tACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACg                                         <  1:351035/140‑1 (MQ=255)
                                                                                              tACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACg                                         <  1:1108698/140‑1 (MQ=255)
                                                                                              tACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGCGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACg                                         >  2:1021243/1‑140 (MQ=255)
                                                                                                   tGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCAtt                                    >  1:9863/1‑140 (MQ=255)
                                                                                                   tGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCAtt                                    >  1:1288934/1‑140 (MQ=255)
                                                                                                     cAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCATTCt                                  >  1:554585/1‑140 (MQ=255)
                                                                                                     cAATTCTCCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCATTCt                                  >  1:408995/1‑140 (MQ=255)
                                                                                                       aTTCTCCGATGTGACCGTTGATGAAAGCGCCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCATTCTTa                                >  2:947968/1‑140 (MQ=255)
                                                                                                           tcCGATGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCATTCTTATccc                            <  2:9863/140‑1 (MQ=255)
                                                                                                               aTGTGACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCATTCTTATCCCGcaa                        >  2:412322/1‑140 (MQ=255)
                                                                                                                tgtgACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCATTCTTATCCCGcaac                       <  2:577216/140‑1 (MQ=255)
                                                                                                                tgtgACCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCATTCTTATCCCGcaac                       >  2:1250642/1‑140 (MQ=255)
                                                                                                                    aCCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCATTCTTATCCCGCAACAAgg                   >  2:336034/1‑140 (MQ=255)
                                                                                                                    aCCGTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCATTCTTATCCCGCAACAAgg                   >  2:1165488/1‑140 (MQ=255)
                                                                                                                       gTTGATGAAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCATTCTTATCCCGCAACAAGGCGt                <  1:1301850/140‑1 (MQ=255)
                                                                                                                           atgaAAGCACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCATTCTTATCCCGCAACAAGGCGTTAGc            <  1:1165488/140‑1 (MQ=255)
                                                                                                                                  cACCGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCATTCTTATCCCGCAACAAGGCGTTAGCCGCacac     >  1:437295/1‑140 (MQ=255)
                                                                                                                                    acGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCATTCTTATCCCGCAACAAGGCGTTAGCCGCACACcg   <  2:434033/139‑1 (MQ=255)
                                                                                                                                     cGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCATTCTTATCCCGCAACAAGGCGTTAGCCGCACACcgc  <  1:60106/140‑1 (MQ=255)
                                                                                                                                     cGGATCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCATTCTTATCCCGCAACAAGGCGTTAGCCGCACACcgc  <  1:336034/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
AGCAATCCGTAGAGCAAGGAAATTTGCATAAGGAAAACGCCACCAGCAACGTAGAGTTGGTCATGGAAAACGGTCAAACCTATCCCCTGAAAGGTACGCTGCAATTCTCCGATGTGACCGTTGATGAAAGCACCGGCTCCATAACCCTACGTGCTGTCTTCCCTAACCCGCAACATACGCTTTTGCCGGGTATGTTTGTGCGTGCACGGATTGATGAAGGCGTCCAACCTGACGCCATTCTTATCCCGCAACAAGGCGTTAGCCGCACACCGC  >  NC_000913/3414540‑3414812

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A