Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F48 I1 R1	45	83.3	2696702	99.2%	2675128	139.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,125,373	C→A	G480C (GGT→TGT)	priA ←	primosome factor N'

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,125,373	0	C	A	100.0%	320.9 / NA	88	G480C (GGT→TGT)	priA	primosome factor N'
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (45/43); total (45/43)

AGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGC  >  NC_000913/4125237‑4125509

aGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCa                                                                                                                                       >  1:547202/1‑140 (MQ=255)

  ttGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAgg                                                                                                                                     <  1:228681/140‑1 (MQ=255)

  ttGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAgg                                                                                                                                     >  2:1078912/1‑140 (MQ=255)

  ttGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAgg                                                                                                                                     <  1:1242342/140‑1 (MQ=255)

  ttGCTGTTCCAGCGCCCCTTTGCGGCT‑GTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGa                                                                                                                                    >  2:1273850/1‑140 (MQ=255)

             gcgcCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTgg                                                                                                                          >  1:835942/1‑140 (MQ=255)

              cgcCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGgc                                                                                                                         >  1:1087577/1‑140 (MQ=255)

               gcCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGgcg                                                                                                                        <  2:547202/140‑1 (MQ=255)

               gcCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGgcg                                                                                                                        <  1:503173/140‑1 (MQ=255)

               gcCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGgcg                                                                                                                        >  2:619551/1‑140 (MQ=255)

               gcCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGgcg                                                                                                                        <  2:1087577/140‑1 (MQ=255)

                ccccTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGgcgc                                                                                                                       >  2:530308/1‑140 (MQ=255)

                ccccTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGgcg                                                                                                                        >  2:973394/1‑139 (MQ=255)

                ccccTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGgcg                                                                                                                        <  1:973394/139‑1 (MQ=255)

                  ccTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCgg                                                                                                                     >  1:875842/1‑140 (MQ=255)

                      tGCGGCT‑GTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCg                                                                                                                <  1:1273850/140‑1 (MQ=255)

                       gCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCg                                                                                                                >  1:893138/1‑140 (MQ=255)

                           cTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACg                                                                                                            <  2:983974/140‑1 (MQ=255)

                           cTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACg                                                                                                            <  2:283964/140‑1 (MQ=255)

                             ggtggtATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCt                                                                                                          <  2:1285681/140‑1 (MQ=255)

                             ggtggtATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCt                                                                                                          >  2:1272340/1‑140 (MQ=255)

                              gtggtATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTg                                                                                                         <  1:530308/140‑1 (MQ=255)

                                ggtATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGAc                                                                                                       <  2:1067188/140‑1 (MQ=255)

                                   aTCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGt                                                                                                    >  1:697537/1‑140 (MQ=255)

                                       cgGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTcaca                                                                                                >  2:1062726/1‑140 (MQ=255)

                                        ggTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAg                                                                                               >  1:1171692/1‑140 (MQ=255)

                                        ggTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAg                                                                                               >  2:960156/1‑140 (MQ=255)

                                         gTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAgt                                                                                              >  1:37036/1‑140 (MQ=255)

                                         gTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAgt                                                                                              >  1:320227/1‑140 (MQ=255)

                                           cGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAgtgg                                                                                            >  1:457002/1‑140 (MQ=255)

                                           cGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAgtgg                                                                                            >  1:609751/1‑140 (MQ=255)

                                                       tGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGa                                                                                <  2:320227/140‑1 (MQ=255)

                                                        gggCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGAt                                                                               <  2:327375/140‑1 (MQ=255)

                                                           cACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGt                                                                            >  1:933731/1‑140 (MQ=255)

                                                            aCGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGtg                                                                           >  1:1173411/1‑140 (MQ=255)

                                                             cGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGtgt                                                                          >  2:553558/1‑139 (MQ=255)

                                                              gCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGtgct                                                                         >  1:1264847/1‑140 (MQ=255)

                                                              gCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGtgct                                                                         >  2:1255368/1‑140 (MQ=255)

                                                                cGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGtgctgc                                                                       <  2:1171692/140‑1 (MQ=255)

                                                                   ggAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGcc                                                                    >  1:593276/1‑140 (MQ=255)

                                                                        aacGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATg                                                               <  2:893138/140‑1 (MQ=255)

                                                                        aacGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATg                                                               <  1:1165521/140‑1 (MQ=255)

                                                                        aacGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGGGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATg                                                               >  1:1047676/1‑140 (MQ=255)

                                                                          ctgcgcGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCa                                                             <  2:835942/138‑1 (MQ=255)

                                                                          cGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCa                                                             <  2:37036/140‑1 (MQ=255)

                                                                          cGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCa                                                             <  2:697537/140‑1 (MQ=255)

                                                                          cGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCa                                                             <  1:1062726/140‑1 (MQ=255)

                                                                          cGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCa                                                             <  1:1078912/140‑1 (MQ=255)

                                                                          cGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCa                                                             <  1:38217/140‑1 (MQ=255)

                                                                          cGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCa                                                             <  1:1272340/140‑1 (MQ=255)

                                                                          cGGCGCGAGCGTCTGTTCAAGCTGTTCGATGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCa                                                             <  2:1264847/140‑1 (MQ=255)

                                                                            gcgcGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCa                                                             >  2:571009/1‑138 (MQ=255)

                                                                            gcgcGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCa                                                             <  1:571009/138‑1 (MQ=255)

                                                                            gcgcGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGc                                                           >  2:468085/1‑140 (MQ=255)

                                                                            gcgcGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGc                                                           <  2:1173411/140‑1 (MQ=255)

                                                                            gcgcGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGc                                                           <  1:906404/140‑1 (MQ=255)

                                                                               cgAGCGTCTGTTCAAGCTGTTCGGTGCTCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCgtg                                                        >  1:1094191/1‑140 (MQ=255)

                                                                               cgAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCgtg                                                        <  1:619551/140‑1 (MQ=255)

                                                                                 aGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTgta                                                      <  2:457002/140‑1 (MQ=255)

                                                                                 aGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTgta                                                      <  2:609751/140‑1 (MQ=255)

                                                                                           cAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCg                                            <  2:394769/140‑1 (MQ=255)

                                                                                                 gTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGt                                      >  1:69020/1‑140 (MQ=255)

                                                                                                   tCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTgg                                    >  1:1166436/1‑140 (MQ=255)

                                                                                                   tCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTgg                                    >  2:406781/1‑140 (MQ=255)

                                                                                                         cccAGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGAGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTc                              >  1:273569/1‑140 (MQ=255)

                                                                                                            aGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAATGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGc                           <  2:606034/140‑1 (MQ=255)

                                                                                                            aGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGc                           >  1:55545/1‑140 (MQ=255)

                                                                                                            aGCCCCACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGc                           >  2:275695/1‑140 (MQ=255)

                                                                                                                ccACGGGGACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATc                       <  2:875842/140‑1 (MQ=255)

                                                                                                                      ggACCAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCca                 <  1:1255368/140‑1 (MQ=255)

                                                                                                                          cAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGt             >  2:416614/1‑140 (MQ=255)

                                                                                                                          cAGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGt             <  2:1094191/140‑1 (MQ=255)

                                                                                                                          aaGGTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGt             <  2:69020/139‑1 (MQ=255)

                                                                                                                            ggTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCg           <  1:468085/140‑1 (MQ=255)

                                                                                                                            ggTGCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCg           <  1:731131/140‑1 (MQ=255)

                                                                                                                               gCGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTgg        >  1:501829/1‑140 (MQ=255)

                                                                                                                                cGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAAt                        <  1:1101080/123‑1 (MQ=255)

                                                                                                                                cGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAAt                        >  2:1101080/1‑123 (MQ=255)

                                                                                                                                cGTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGc       >  1:918414/1‑140 (MQ=255)

                                                                                                                                 gTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGca      >  2:570447/1‑140 (MQ=255)

                                                                                                                                 gTGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGca      <  1:406781/140‑1 (MQ=255)

                                                                                                                                  tGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGcac     >  2:327158/1‑140 (MQ=255)

                                                                                                                                  tGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGcac     >  1:846170/1‑140 (MQ=255)

                                                                                                                                  tGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGcac     >  2:1050983/1‑140 (MQ=255)

                                                                                                                                  tGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGcac     >  2:1095840/1‑140 (MQ=255)

                                                                                                                                  tGGAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGcac     >  2:422962/1‑140 (MQ=255)

                                                                                                                                    gAACAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCAcag   <  2:933731/140‑1 (MQ=255)

                                                                                                                                     aaCAGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCAcagc  <  1:553558/140‑1 (MQ=255)

AGTTGCTGTTCCAGCGCCCCTTTGCGGCTGGTGGTATCGCGGTCGATACGAGAAATGGGCACGCCGGGGAACAACGGCGCGAGCGTCTGTTCAAGCTGTTCGGTGCCCAGCCCCACGGGGACCAGGTGCGTGGAACCGCAGGAAGGGCACTGGCGCGGCACCGGACGCTGACTGTCACAGTGGTGGCAGCGCAGATGGTGCTGCGCCTGATGCAGCGTGTAGTAGTGATCGCAACGTGGGCATTCGGCAATCCAGCCACAGTCGTGGCACAGC  >  NC_000913/4125237‑4125509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A