Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F48 I1 R1	76	74.1	2532288	99.0%	2506965	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,898,778	C→A	C214F (TGC→TTC)	ygcU ←	putative FAD‑containing dehydrogenase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,898,778	0	C	A	100.0%	232.1 / NA	65	C214F (TGC→TTC)	ygcU	putative FAD‑containing dehydrogenase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (37/28); total (37/28)

GACGGACGATACCCTTCCACCATGATTTCACGCAGGATGTTGAAGCCGGTTTTCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCC  >  NC_000913/2898643‑2898914

gacggacgATACCCTTCCACCATGATTTCACGCAGGATGTTGAAGCCGGTTTTCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACaa                                                                                                                                      <  2:676744/140‑1 (MQ=255)

        aTACCCTTCCACCATGATTTCACGCAGGATGTTGAAGCCGGTTTTCATGTCTTCCAGGATATAGCCGTATAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCtt                                                                                                                              >  2:838875/1‑140 (MQ=255)

        aTACCCTTCCACCATGATTTCACGCAGGATGTTGAAGCCGGTTTTCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGAGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCtt                                                                                                                              >  1:585177/1‑140 (MQ=255)

           cccTTCCACCATGATTTCACGCAGGATGTTGAAGCCGGTTTTCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGt                                                                                                                           >  2:201269/1‑140 (MQ=255)

            ccTTCCACCATGATTTCACGCAGGATGTTGAAGCCGGTTTTCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGtt                                                                                                                          <  2:607929/140‑1 (MQ=255)

                   ccaTGATTTCACGCAGGATGTTGAAGCCGGTTTTCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCgatg                                                                                                                   >  1:582509/1‑140 (MQ=255)

                    caTGATTTCACGCAGGATGTTGAAGCCGGTTTTCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCgatga                                                                                                                  >  2:246206/1‑140 (MQ=255)

                    caTGATTTCACGCAGGATGTTGAAGCCGGCTTTCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCgatgt                                                                                                                  >  2:694510/1‑139 (MQ=255)

                        aTTTCACGCAGGATGTTGAAGCCGGTTTTCATGTCTTCCAGGATATAGCCGTAGATGAGGATGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCgatgatgat                                                                                                              >  2:843214/1‑140 (MQ=255)

                         tttCACGCAGGATGTTGAAGCCGGTTTTCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGatgatgatg                                                                                                             >  1:525422/1‑140 (MQ=255)

                            cACGCAGGATGTTGAAGCCGGTTTTCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGa                                                                                                          >  1:712376/1‑140 (MQ=255)

                                   gATGTTGAAGCCGGTTTTCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGt                                                                                                   >  2:922346/1‑140 (MQ=255)

                                   gATGTTGAAGCCGGTTTTCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGt                                                                                                   >  2:564354/1‑140 (MQ=255)

                                   gATGTTGAAGCCGGTTTTCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGATACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGt                                                                                                   >  2:638284/1‑140 (MQ=255)

                                         gAAGCCGGTTTTCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGc                                                                                             >  2:187645/1‑140 (MQ=255)

                                             ccGGTTTTCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGc                                                                                         >  1:246517/1‑140 (MQ=255)

                                             ccGGTTTTCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGc                                                                                         >  1:177976/1‑140 (MQ=255)

                                                   ttCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCcgcgcg                                                                                   <  1:246206/140‑1 (MQ=255)

                                                     cATGTCTTCCAGGATATAGCCGTATAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCgcggc                                                                                 <  1:838875/140‑1 (MQ=255)

                                                       tGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGt                                                                               <  1:201269/140‑1 (MQ=255)

                                                         tCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTgg                                                                             <  2:10588/140‑1 (MQ=255)

                                                           ttCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCa                                                                           <  2:712376/140‑1 (MQ=255)

                                                           ttCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCa                                                                           <  2:844950/140‑1 (MQ=255)

                                                             ccAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACg                                                                         >  1:293612/1‑140 (MQ=255)

                                                                 gATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGtttt                                                                     >  2:98939/1‑140 (MQ=255)

                                                                 gATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGtttt                                                                     >  2:1137447/1‑140 (MQ=255)

                                                                   tataGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTa                                                                   <  1:187645/140‑1 (MQ=255)

                                                                     taGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAAt                                                                 <  1:638284/140‑1 (MQ=255)

                                                                      aGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATg                                                                >  2:880904/1‑140 (MQ=255)

                                                                      aGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATg                                                                >  2:894180/1‑140 (MQ=255)

                                                                        ccGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCg                                                              <  1:1137447/140‑1 (MQ=255)

                                                                           tAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCgtgt                                                           >  2:147088/1‑140 (MQ=255)

                                                                           tAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCgtgt                                                           >  1:636023/1‑140 (MQ=255)

                                                                             gaagaGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGa                                                         <  1:98939/140‑1 (MQ=255)

                                                                             gaagaGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGa                                                         >  1:773916/1‑140 (MQ=255)

                                                                                   gttgttTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGc                                                   >  2:285189/1‑140 (MQ=255)

                                                                                     tgttTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCa                                                 <  2:739482/140‑1 (MQ=255)

                                                                                     tgttTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCa                                                 >  1:775967/1‑140 (MQ=255)

                                                                                            cGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCa                                          >  2:773184/1‑140 (MQ=255)

                                                                                            cGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCa                                          >  1:675496/1‑140 (MQ=255)

                                                                                               ggTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGTCATCAGCCAATa                                       <  2:177976/140‑1 (MQ=255)

                                                                                                 tGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACt                                     >  2:316406/1‑140 (MQ=255)

                                                                                                   aaTTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGc                                   <  1:925586/140‑1 (MQ=255)

                                                                                                   aaTTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGc                                   >  1:947048/1‑140 (MQ=255)

                                                                                                   aaTTTAAAGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGc                                   >  2:444985/1‑140 (MQ=255)

                                                                                                        aaaGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCa                              <  2:83168/140‑1 (MQ=255)

                                                                                                        aaaGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCa                              <  2:652472/140‑1 (MQ=255)

                                                                                                          aGATTTTCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGa                            <  1:922346/140‑1 (MQ=255)

                                                                                                              tttCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCaa                        <  1:507755/140‑1 (MQ=255)

                                                                                                              tttCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCaa                        >  1:344143/1‑140 (MQ=255)

                                                                                                              tttCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCaa                        >  2:32737/1‑140 (MQ=255)

                                                                                                                tCACTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACg                      >  1:349333/1‑140 (MQ=255)

                                                                                                                   cTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGAcc                   <  2:675496/140‑1 (MQ=255)

                                                                                                                   cTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGAcc                   <  1:285189/140‑1 (MQ=255)

                                                                                                                   cTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGAcc                   <  2:773916/140‑1 (MQ=255)

                                                                                                                   cTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGAcc                   <  2:293612/140‑1 (MQ=255)

                                                                                                                   cTGTTACTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGAcc                   <  2:246517/140‑1 (MQ=255)

                                                                                                                        aCTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATc              >  1:784844/1‑140 (MQ=255)

                                                                                                                        aCTTCAGTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATc              <  1:843214/140‑1 (MQ=255)

                                                                                                                              gTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGAt        >  1:783274/1‑140 (MQ=255)

                                                                                                                              gTGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGAt        >  2:544791/1‑140 (MQ=255)

                                                                                                                               tGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGAtt       <  1:564354/140‑1 (MQ=255)

                                                                                                                               tGATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGAtt       <  2:585177/140‑1 (MQ=255)

                                                                                                                                gATATAGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTg      >  1:1108303/1‑140 (MQ=255)

                                                                                                                                    taGAACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGcc  <  2:344143/140‑1 (MQ=255)

GACGGACGATACCCTTCCACCATGATTTCACGCAGGATGTTGAAGCCGGTTTTCATGTCTTCCAGGATATAGCCGTAGAAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCC  >  NC_000913/2898643‑2898914

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A