Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F48 I1 R1	79	90.7	3162666	99.0%	3131039	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,898,991	G→T	S143Y (TCT→TAT)	ygcU ←	putative FAD‑containing dehydrogenase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,898,991	0	G	T	100.0%	350.2 / NA	100	S143Y (TCT→TAT)	ygcU	putative FAD‑containing dehydrogenase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (45/55); total (45/55)

Only 100 of 102 total aligned reads displayed.

TGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTAATGATTTGATTCATGGCGGAGCCGTCGAGCACCA  >  NC_000913/2898855‑2899126

tgtgACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAAt                                                                                                                                      >  1:310693/1‑140 (MQ=255)

tgtgACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAAt                                                                                                                                      >  1:923384/1‑140 (MQ=255)

tgtgACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAAt                                                                                                                                      >  2:353916/1‑140 (MQ=255)

 gtgACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATg                                                                                                                                     <  1:289896/140‑1 (MQ=255)

  tgACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGc                                                                                                                                    >  1:299614/1‑140 (MQ=255)

     cGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGcccc                                                                                                                                 <  1:1066160/140‑1 (MQ=255)

     cGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGcccc                                                                                                                                 <  2:670817/140‑1 (MQ=255)

     cGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGcccc                                                                                                                                 <  2:815102/140‑1 (MQ=255)

      ggTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCg                                                                                                                                <  1:1471117/140‑1 (MQ=255)

      ggTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCg                                                                                                                                <  2:1266876/140‑1 (MQ=255)

      ggTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCg                                                                                                                                <  2:6464/140‑1 (MQ=255)

      ggTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCg                                                                                                                                <  2:299614/140‑1 (MQ=255)

      ggTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCg                                                                                                                                <  2:293696/140‑1 (MQ=255)

        tGCCATCAGCCGATACTGCTTCCAGACCAACGACCATATCTTCTATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCgtg                                                                                                                              >  2:1244788/1‑140 (MQ=255)

        tGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCTATACTTCGGGTTGCTACCATCCCGCCCATCTGCTCGAGCGGCTTTGACTGCGGATAATGCCCCgtg                                                                                                                              >  2:289896/1‑140 (MQ=255)

        tGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCgtg                                                                                                                              >  1:186995/1‑140 (MQ=255)

          ccATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCgtggt                                                                                                                            >  1:152873/1‑140 (MQ=255)

             tCAGCCAATACTGCTTCCAGACCAACGAACATATCTTCGATTGCGCCGTGGAGTGTGGAGAACTGCCCGATGCTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCACGTGGTGTa                                                                                                                         <  1:995895/140‑1 (MQ=255)

                  cAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCtt                                                                                                                    >  2:1560649/1‑140 (MQ=255)

                         gCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACg                                                                                                             <  1:1317012/140‑1 (MQ=255)

                          cTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGc                                                                                                            >  1:1321451/1‑140 (MQ=255)

                          cTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGc                                                                                                            >  1:688196/1‑140 (MQ=255)

                          cTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGc                                                                                                            >  2:1143127/1‑140 (MQ=255)

                          cTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGc                                                                                                            >  1:1469859/1‑140 (MQ=255)

                          cTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGc                                                                                                            >  2:1306363/1‑140 (MQ=255)

                               aGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGTGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAAcgc                                                                                                       >  2:706970/1‑140 (MQ=255)

                               aGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGTTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAAcgc                                                                                                       >  2:1516407/1‑140 (MQ=255)

                                     aCGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTc                                                                                                 >  2:20009/1‑140 (MQ=255)

                                     aCGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTc                                                                                                 >  2:886257/1‑140 (MQ=255)

                                     aCGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATACCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTc                                                                                                 >  1:1563077/1‑140 (MQ=255)

                                      cGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTcc                                                                                                >  2:1465228/1‑140 (MQ=255)

                                      cGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTcc                                                                                                <  1:1118782/140‑1 (MQ=255)

                                      cGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTcc                                                                                                >  1:303611/1‑140 (MQ=255)

                                           atatCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCAc                                                                                           >  2:1230611/1‑140 (MQ=255)

                                            tatCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACt                                                                                          <  1:993648/140‑1 (MQ=255)

                                              tCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTc                                                                                        <  1:1134700/140‑1 (MQ=255)

                                               cTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTcc                                                                                       <  1:247731/140‑1 (MQ=255)

                                                 tCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAg                                                                                     <  1:353916/140‑1 (MQ=255)

                                                 tCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAg                                                                                     <  2:688196/140‑1 (MQ=255)

                                                  cGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGc                                                                                    >  2:72723/1‑140 (MQ=255)

                                                   gATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCg                                                                                   >  2:794141/1‑140 (MQ=255)

                                                   gATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCg                                                                                   <  1:1306363/140‑1 (MQ=255)

                                                    aTTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCgg                                                                                  <  2:369820/140‑1 (MQ=255)

                                                      tGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGaa                                                                                >  1:352777/1‑140 (MQ=255)

                                                        cgcCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTTCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAaca                                                                              >  1:131925/1‑140 (MQ=255)

                                                        cgcCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAaca                                                                              <  1:1230611/140‑1 (MQ=255)

                                                            gTAGAGTGTGGAAAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAAcaccac                                                                          >  1:86340/1‑140 (MQ=255)

                                                                agTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTg                                                                      <  2:310693/140‑1 (MQ=255)

                                                                  tgtgGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCACCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTgct                                                                    >  2:928070/1‑139 (MQ=255)

                                                                    tgGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGcc                                                                  <  1:1135821/140‑1 (MQ=255)

                                                                      gagaACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGt                                                                <  2:707426/140‑1 (MQ=255)

                                                                       agaACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTc                                                               >  1:1368020/1‑140 (MQ=255)

                                                                       agaACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTc                                                               >  1:1562797/1‑140 (MQ=255)

                                                                       agaACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTc                                                               >  2:584052/1‑140 (MQ=255)

                                                                        gaACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCg                                                              <  1:886257/140‑1 (MQ=255)

                                                                        aaaCTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCg                                                              <  2:1321451/139‑1 (MQ=255)

                                                                        aaaCTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCg                                                              <  2:86340/139‑1 (MQ=255)

                                                                        aaaCTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCg                                                              <  2:483496/139‑1 (MQ=255)

                                                                         aaCTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCATCGc                                                             >  1:994960/1‑140 (MQ=255)

                                                                          aCTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGcc                                                            <  2:352777/140‑1 (MQ=255)

                                                                           atGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCt                                                           <  2:495840/139‑1 (MQ=255)

                                                                            tGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCtt                                                          >  2:503025/1‑139 (MQ=255)

                                                                            tGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTg                                                          <  1:20009/140‑1 (MQ=255)

                                                                            tGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTg                                                          >  2:1436485/1‑140 (MQ=255)

                                                                             gCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTTCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGc                                                         <  2:131925/140‑1 (MQ=255)

                                                                             gCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGc                                                         <  2:1368020/140‑1 (MQ=255)

                                                                              cccGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCa                                                        >  1:1442780/1‑140 (MQ=255)

                                                                              cccGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCa                                                        >  1:448970/1‑140 (MQ=255)

                                                                              cccGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCa                                                        >  2:1205305/1‑140 (MQ=255)

                                                                              cccGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCa                                                        >  2:1221764/1‑140 (MQ=255)

                                                                                cGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCata                                                      <  2:1219443/140‑1 (MQ=255)

                                                                                cGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCata                                                      <  1:1560649/140‑1 (MQ=255)

                                                                                  aTACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATAtt                                                    <  2:732757/140‑1 (MQ=255)

                                                                                    aCTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATtct                                                  <  1:1221764/140‑1 (MQ=255)

                                                                                    aCTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATtct                                                  <  1:443505/140‑1 (MQ=255)

                                                                                      ttCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCtca                                                >  2:430049/1‑140 (MQ=255)

                                                                                        cGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCGCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCtcaat                                              <  1:1575922/140‑1 (MQ=255)

                                                                                        cGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCtcaat                                              >  2:900464/1‑140 (MQ=255)

                                                                                          ggTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCtcaatat                                            <  1:1465228/140‑1 (MQ=255)

                                                                                          ggTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCtcaatat                                            <  1:1436485/140‑1 (MQ=255)

                                                                                          ggTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCtcaatat                                            <  2:546243/140‑1 (MQ=255)

                                                                                           gTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATACCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCtcaatatc                                           <  2:1563077/140‑1 (MQ=255)

                                                                                            ttGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCtcaatatca                                          <  1:794141/140‑1 (MQ=255)

                                                                                             tGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCtcaatatcaa                                         <  2:943407/140‑1 (MQ=255)

                                                                                                  ccAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCTCATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTa                                    <  1:919112/140‑1 (MQ=255)

                                                                                                  ccAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTa                                    <  1:1311781/140‑1 (MQ=255)

                                                                                                   cAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTaa                                   <  1:72723/140‑1 (MQ=255)

                                                                                                          cccATCTGCGCCAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTAAtgatttg                            >  1:1235569/1‑140 (MQ=255)

                                                                                                                    ccAGCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTAATGATTTGATTCATGGCg                  <  2:747729/140‑1 (MQ=255)

                                                                                                                       gCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTAATGATTTGATTCATGGCGGAg               <  1:1393201/140‑1 (MQ=255)

                                                                                                                       gCGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTAATGATTTGATTCATGGCGGAg               >  1:939899/1‑140 (MQ=255)

                                                                                                                       acGGCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTAATGATTTGATTCATGGCGGAg               <  2:152873/139‑1 (MQ=255)

                                                                                                                          gCTTTGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTAATGATTTGATTCATGGCGGAGCCg            <  1:1516407/140‑1 (MQ=255)

                                                                                                                          gCTTTGACTGCGGATAATGCCCCGTGGTATAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTAATGATTTGATTCATGGCGGAGCCg            <  2:1485301/140‑1 (MQ=255)

                                                                                                                              tGACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTAATGATTTGATTCATGGCGGAGCCGTCGa        <  2:133880/140‑1 (MQ=255)

                                                                                                                               gACTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTAATGATTTGATTCATGGCGGAGCCGTCGAg       <  2:1562797/140‑1 (MQ=255)

                                                                                                                                 cTGCGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTAATGATTTGATTCATGGCGGAGCCGTCGAGca     <  1:430049/140‑1 (MQ=255)

                                                                                                                                   gCGGATAATGCCCCGTGGTGTAACC‑TTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTAATGATTTGATTCATGGCGGAGCCGTCGAGcacca  <  1:1244788/140‑1 (MQ=255)

                                                                                                                                    cGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTAATGATTTGATTCATGGCGGAGCCGTCGAGcacca  >  2:789036/1‑140 (MQ=255)

                                                                                                                                    cGGATAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTAATGATTTGATTCATGGCGGAGCCGTCGAGcacca  >  1:318911/1‑140 (MQ=255)

TGTGACGGTGCCATCAGCCAATACTGCTTCCAGACCAACGACCATATCTTCGATTGCGCCGTAGAGTGTGGAGAACTGCCCGATACTTCGGGTTGCTACCAGGCCGCCCATCTGCGCCAGCGGCTTTGACTGCGGAGAATGCCCCGTGGTGTAACCTTTTTCACGCAACGCGTTTTCCAGCACTTCCAGCGGAACACCACATTGCGCCGTCGCCTGCATATTCTCAATATCAATATTAATGATTTGATTCATGGCGGAGCCGTCGAGCACCA  >  NC_000913/2898855‑2899126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A