Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F48 I1 R1 76 74.1 2532288 99.0% 2506965 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,961,386 C→A R348L (CGC→CTC)  recC ← exodeoxyribonuclease V subunit RecC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,961,3860CA100.0% 268.9 / NA 75R348L (CGC→CTC) recCexodeoxyribonuclease V subunit RecC
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (38/37);  total (38/37)

TAAAACTTCAACTTCACGCTGCGGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGCGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAGGAGATAAATGTAGTCGCGCCCAAGCTTAC  >  NC_000913/2961262‑2961518
                                                                                                                            |                                                                                                                                    
aaaaaCTTCAACTTCACGCTGCGGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTttccagttcca                                                                                                                       <  2:737774/139‑1 (MQ=255)
     cttcaacttcaCGCTGCGGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATg                                                                                                                  >  1:1035802/1‑140 (MQ=255)
     cttcaacttcaCGCTGCGGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATg                                                                                                                  >  1:662228/1‑140 (MQ=255)
     cttcaacttcaCGCTGCGGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATg                                                                                                                  >  1:1101663/1‑140 (MQ=255)
      ttcaacttcaCGCTGCGGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGt                                                                                                                 <  2:748571/140‑1 (MQ=255)
      ttcaacttcaCGCTGCGGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGt                                                                                                                 <  1:73986/140‑1 (MQ=255)
      ttcaacttcaCGCTGCGGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGt                                                                                                                 <  1:130017/140‑1 (MQ=255)
      ttcaacttcaCGCTGCGGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGt                                                                                                                 <  2:662228/140‑1 (MQ=255)
       tcaacttcaCGCTGCTGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTc                                                                                                                <  2:874855/140‑1 (MQ=255)
       tcaacttcaCGCTGCGGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTc                                                                                                                <  1:607869/140‑1 (MQ=255)
       tcaacttcaCGCTGCGGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTc                                                                                                                <  1:59971/140‑1 (MQ=255)
          acttcaCGCTGCGGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAACCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGa                                                                                                             <  2:952382/140‑1 (MQ=255)
            ttcaCGCTGCGGGCTATGGCAAACGTGGAAGGCGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACt                                                                                                           <  1:1096796/140‑1 (MQ=255)
              caCGCTGCGGGCTATTGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGa                                                                                                         <  2:851655/140‑1 (MQ=255)
              caCGCTGCGGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGa                                                                                                         <  1:930090/140‑1 (MQ=255)
               aCGCTGCGGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGaa                                                                                                        >  1:5616/1‑140 (MQ=255)
               aCGCTGCGGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGaa                                                                                                        >  2:42451/1‑140 (MQ=255)
                     cGGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTAt                                                                                                  >  1:827028/1‑140 (MQ=255)
                      gggCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATg                                                                                                 >  1:777506/1‑140 (MQ=255)
                          aaTGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATgcagc                                                                                             <  2:483392/139‑1 (MQ=255)
                             ggCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAgg                                                                                          >  1:253430/1‑140 (MQ=255)
                             ggCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAgg                                                                                          >  1:1080928/1‑140 (MQ=255)
                                 caCGTGGAAGGAGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGTAAACTCTTCGATATTCACACACGCGACGGCGAGGATTTCCAGTTCTATATTGTCAGTCTTAATGTTATGCAGCAGGTTAt                                                                                      >  2:82703/2‑140 (MQ=255)
                                  aCGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATc                                                                                     >  2:455670/1‑140 (MQ=255)
                                  aCGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATc                                                                                     <  2:1101663/140‑1 (MQ=255)
                                  aCGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATc                                                                                     >  1:1223234/1‑140 (MQ=255)
                                    gTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTg                                                                                   >  2:79432/1‑140 (MQ=255)
                                       gAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTCCGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCg                                                                                >  2:1238848/1‑140 (MQ=255)
                                           gTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGAc                                                                            <  1:978144/140‑1 (MQ=255)
                                            tGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCGACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACa                                                                           >  2:93292/1‑140 (MQ=255)
                                              aTACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGTAAAACTCTTCGATGTTCACACCAGTAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATc                                                                         >  1:263291/1‑140 (MQ=255)
                                              aTACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATc                                                                         >  2:250568/1‑140 (MQ=255)
                                              aTACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATc                                                                         >  1:719276/1‑140 (MQ=255)
                                                  tGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTTAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACa                                                                     <  1:168256/140‑1 (MQ=255)
                                                      aTCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAgg                                                                 >  2:380553/1‑140 (MQ=255)
                                                        ccAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCg                                                               >  1:533293/1‑140 (MQ=255)
                                                          aGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTc                                                             <  1:42451/140‑1 (MQ=255)
                                                            tGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCa                                                           >  2:367655/1‑140 (MQ=255)
                                                               aTCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCt                                                        >  1:549270/1‑140 (MQ=255)
                                                                 cAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTcc                                                      >  1:654948/1‑140 (MQ=255)
                                                                   aGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTg                                                    >  1:461938/1‑140 (MQ=255)
                                                                   aGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTg                                                    >  2:384857/1‑140 (MQ=255)
                                                                   aGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTg                                                    >  2:767355/1‑140 (MQ=255)
                                                                    gCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTgg                                                   <  2:1035802/140‑1 (MQ=255)
                                                                     cGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGgc                                                  <  1:455670/140‑1 (MQ=255)
                                                                     cGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGgc                                                  <  2:585922/140‑1 (MQ=255)
                                                                      gggCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGgct                                                 >  1:124848/1‑140 (MQ=255)
                                                                       ggCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGgctg                                                <  2:461938/140‑1 (MQ=255)
                                                                       ggCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGgctg                                                <  2:795264/140‑1 (MQ=255)
                                                                         cGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGgctgct                                              >  1:1037740/1‑140 (MQ=255)
                                                                         cGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGgctgct                                              >  1:1083256/1‑140 (MQ=255)
                                                                         cGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGgctgct                                              >  1:699339/1‑140 (MQ=255)
                                                                         cGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGgctgct                                              >  1:95307/1‑140 (MQ=255)
                                                                         cGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGgctgct                                              <  2:313413/140‑1 (MQ=255)
                                                                            ttGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCtctc                                           <  1:593487/140‑1 (MQ=255)
                                                                            ttGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCtctc                                           <  2:777506/140‑1 (MQ=255)
                                                                                     cTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGa                                  <  1:569306/140‑1 (MQ=255)
                                                                                      tACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGaa                                 <  2:1223234/140‑1 (MQ=255)
                                                                                      tACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGaa                                 >  2:113087/1‑140 (MQ=255)
                                                                                       aCGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGaaa                                <  2:832455/140‑1 (MQ=255)
                                                                                        cGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAg                               <  2:1083256/140‑1 (MQ=255)
                                                                                           gAAAACTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAGgag                            <  1:883226/140‑1 (MQ=255)
                                                                                             aaaCTCTTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAGGAGAt                          <  1:79432/140‑1 (MQ=255)
                                                                                                ctctTCGATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAGGAGATaaa                       >  2:682633/1‑140 (MQ=255)
                                                                                                      gATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAGGAGATAAATGTAGt                 <  1:93292/140‑1 (MQ=255)
                                                                                                      gATGTTCACACCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAGGAGATAAATGTAGt                 <  2:786817/140‑1 (MQ=255)
                                                                                                            cacaCCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAGGAGATAAATGTAGTCGCGcc           <  1:113087/140‑1 (MQ=255)
                                                                                                            cacaCCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAGGAGATAAATGTAGTCGCGcc           <  2:95307/140‑1 (MQ=255)
                                                                                                            cacaCCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAGGAGATAAATGTAGTCGCGcc           <  2:253430/140‑1 (MQ=255)
                                                                                                               acCAGCAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAGGAGATAAATGTAGTCGCGCCCaa        >  1:623273/1‑140 (MQ=255)
                                                                                                                    cAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAGGAGATAAATGTAGTCGCGCGCAAGCTTa   >  2:1232185/1‑140 (MQ=255)
                                                                                                                    cAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAGGAGATAAATGTAGTCGCGCCCAAGCTTa   >  1:806438/1‑140 (MQ=255)
                                                                                                                    cAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAGGAGATAAATGTAGTCGCGCCCAAGCTTa   >  2:1083120/1‑140 (MQ=255)
                                                                                                                    cAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAGGAGATAAATGTAGTCGCGCCCAAGCTTa   >  2:316603/1‑140 (MQ=255)
                                                                                                                    cAACGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAGGAGATAAATGTAGTCGCGCCCAAGCTTa   >  2:342251/1‑140 (MQ=255)
                                                                                                                     aaCGGCGAGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAGGAGATAAATGTAGTCGCGCCCAAGCTTAc  <  2:699339/140‑1 (MQ=255)
                                                                                                                            |                                                                                                                                    
TAAAACTTCAACTTCACGCTGCGGGCTATGGCAAACGTGGAAGGTGATACTGCTATCCAGTGGATCAAGCGGGCGTTTGTTATCGCTACGGGAAAACTCTTCGATGTTCACACCAGCAACGGCGCGGTTTTCCAGTTCCAGAATGTCAGACTGAATGTTATGCAGCAGGTTATCTGGCGTGACATCGACAAAGGCGTCCAGCTCCTGGCTGCTCTCCAGGTCAGAAAGGAGATAAATGTAGTCGCGCCCAAGCTTAC  >  NC_000913/2961262‑2961518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A