Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F48 I1 R1 76 74.1 2532288 99.0% 2506965 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,107,849 G→T P436Q (CCG→CAG)  speC ← ornithine decarboxylase, biosynthetic

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,107,8490GT93.8% 209.6 / 6.1 65P436Q (CCG→CAG) speCornithine decarboxylase, biosynthetic
Reads supporting (aligned to +/- strand):  ref base G (2/2);  new base T (19/42);  total (21/44)
Fisher's exact test for biased strand distribution p-value = 5.89e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01

TACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAATTTTGGCGTTAACATCCAGTGCAGCAAACAGCGG  >  NC_000913/3107714‑3107982
                                                                                                                                       |                                                                                                                                     
tACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCg                                                                                                                                   >  2:1065962/1‑140 (MQ=255)
tACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCg                                                                                                                                   <  1:1229173/140‑1 (MQ=255)
tACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCg                                                                                                                                   >  2:455775/1‑140 (MQ=255)
tACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTAGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCg                                                                                                                                   <  2:168797/140‑1 (MQ=255)
aaCTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCg                                                                                                                                   <  2:320465/139‑1 (MQ=255)
aaCTGATCCGCGGCAAATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACGGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCg                                                                                                                                   <  2:333958/139‑1 (MQ=255)
  cTGATCTGCGGAATATCCTTCAAAGCCGTCCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCCCTGGATAACACTGATGTCGGATAATCCTGCCAAAATTTGCCATCAACACCGGGCGGGATAAACTGGCGGa                                                                                                                                 <  1:1192671/140‑1 (MQ=255)
  cTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGa                                                                                                                                 <  1:61593/140‑1 (MQ=255)
  cTGATCCGCGGAATACCCTTGAAAGCCGTACTACTGCGCCCCCGGCTCAAAACTGAAAAAACGGGGGTCGCTGGCTAACACTGAAGTCGAATACCCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGa                                                                                                                                 <  2:733434/140‑1 (MQ=255)
   tGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGaa                                                                                                                                <  1:869873/140‑1 (MQ=255)
   tGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGaa                                                                                                                                >  2:710517/1‑140 (MQ=255)
     aTCCGCTGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGATCAAAACTTAAAAAACGGCAGTCTCTGGCCAACACTGATGTCGGATAATCCTCCCACAATTTTCCATCAACAACAGGCCGGGTAAACTGTCGGAACa                                                                                                                              >  2:1167601/1‑140 (MQ=255)
     aTCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACa                                                                                                                              >  2:594271/1‑140 (MQ=255)
     aTCCGCGGCACATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACa                                                                                                                              >  1:343147/1‑140 (MQ=255)
            gCATATCCTTCAAAGCCGGGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACa                                                                                                                       <  1:1200881/140‑1 (MQ=255)
             aatatCCTTCAAAGCCGTGCCCCTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAg                                                                                                                      <  2:222306/139‑1 (MQ=255)
              atatCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAgc                                                                                                                     <  1:966781/140‑1 (MQ=255)
               tatCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAgcg                                                                                                                    <  1:245188/140‑1 (MQ=255)
                atCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAgcgc                                                                                                                   <  2:1020409/140‑1 (MQ=255)
                  ccTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAgcgcgc                                                                                                                 <  1:455775/140‑1 (MQ=255)
                  ccTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAgcgcgc                                                                                                                 <  1:838882/140‑1 (MQ=255)
                  ccTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAgcgcgc                                                                                                                 <  2:589166/140‑1 (MQ=255)
                         aGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATa                                                                                                          >  1:32632/1‑140 (MQ=255)
                           ccGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGc                                                                                                        >  2:867052/1‑140 (MQ=255)
                           ccGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTACCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGc                                                                                                        >  2:894058/1‑140 (MQ=255)
                            cGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGcc                                                                                                       >  1:1070407/1‑140 (MQ=255)
                              tGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCtt                                                                                                     >  2:1134090/1‑140 (MQ=255)
                              tGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCCGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGGTAAACTGGCGGAACTGCTTACCACGCGCAAAAATAGCCtt                                                                                                     >  2:208589/1‑140 (MQ=255)
                                 cccTTCCCCCCCGGCTCAGAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGAATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTgcg                                                                                                  <  2:1070680/138‑1 (MQ=255)
                                 cACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTgcg                                                                                                  <  2:1226165/140‑1 (MQ=255)
                                 cACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTgcg                                                                                                  <  1:771259/140‑1 (MQ=255)
                                 cACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTgcg                                                                                                  <  2:1231233/140‑1 (MQ=255)
                                 cACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTgcg                                                                                                  <  2:1213955/140‑1 (MQ=255)
                                   cTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTgcgcg                                                                                                <  2:1232401/140‑1 (MQ=255)
                                      cGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCtt                                                                                             <  1:961313/140‑1 (MQ=255)
                                      cGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCtt                                                                                             <  2:1051797/140‑1 (MQ=255)
                                        cccccGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCa                                                                                           <  1:222529/140‑1 (MQ=255)
                                         ccccGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCaa                                                                                          >  1:1020166/1‑140 (MQ=255)
                                               cTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTa                                                                                    <  1:1066280/140‑1 (MQ=255)
                                                tCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCCTCAATCCCTAt                                                                                   <  1:1065962/140‑1 (MQ=255)
                                                 cAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTAtc                                                                                  <  1:867052/140‑1 (MQ=255)
                                                           aaaaCGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACt                                                                        <  2:343147/140‑1 (MQ=255)
                                                           aaaaCGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACt                                                                        <  2:106837/140‑1 (MQ=255)
                                                           aaaaCGGCGGGCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACCCt                                                                        <  1:208589/140‑1 (MQ=255)
                                                                    gTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTTCGCGCTTCAATCCCTATCTCAACACACTCAGCCcaca                                                               >  2:1223433/1‑140 (MQ=255)
                                                                       gCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGcc                                                            <  1:710517/140‑1 (MQ=255)
                                                                            cTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGc                                                       <  2:1020166/140‑1 (MQ=255)
                                                                            cTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGc                                                       <  2:1070407/140‑1 (MQ=255)
                                                                            cTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGc                                                       <  1:790959/140‑1 (MQ=255)
                                                                               acacTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCa                                                    <  1:29489/140‑1 (MQ=255)
                                                                                     aTGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGACTAGCCTTGCGCGCTTCAATCCCTTTCTCAACACACTCAGCCCACAGCCGACGCCCACTCTcc                                              >  2:428551/1‑140 (MQ=255)
                                                                                     aTGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTcc                                              >  1:1056208/1‑140 (MQ=255)
                                                                                     aTGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTcc                                              >  1:222532/1‑140 (MQ=255)
                                                                                     aTGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTcc                                              >  1:37983/1‑140 (MQ=255)
                                                                                     aTGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTcc                                              >  1:415436/1‑140 (MQ=255)
                                                                                           gATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGTCCACAGCCGACGCCCACTCTCCCCTTCa                                        >  1:623807/1‑140 (MQ=255)
                                                                                               aTCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGATCGGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGaa                                    >  1:983252/1‑140 (MQ=255)
                                                                                                 ccTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAAtt                                  >  1:717890/1‑140 (MQ=255)
                                                                                                  cTGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAAttt                                 <  1:697755/140‑1 (MQ=255)
                                                                                                   tGCCACAATTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAAtttt                                <  2:1184/140‑1 (MQ=255)
                                                                                                     ccACAATTTACCATCAACAACGGGCGGGATAAACTGGCGGGACAGCTTACAGCGCGCAAGAACAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACACCCGACGCTCACTCTCCCCTTCATGAAtttttt                              >  2:594655/1‑138 (MQ=255)
                                                                                                         aaTTTGCCATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAATTTTGGCGtt                          <  2:479161/140‑1 (MQ=255)
                                                                                                         aaTTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAATTTTGGCGtt                          <  2:415436/140‑1 (MQ=255)
                                                                                                               ccATCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAATTTTGGCGTTAACATc                    <  1:1134090/140‑1 (MQ=255)
                                                                                                                 aTCAACAACGGGCGGGATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGAGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAATTTTGGCGTTAACATCCa                  <  1:964000/140‑1 (MQ=255)
                                                                                                                            gcgggATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAATTTTGGCGTTAACATCCAGTGCAGCAAAc       >  1:593142/1‑140 (MQ=255)
                                                                                                                              gggATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAATTTTGGCGTTAACATCCAGTGCAGCAAACAg     <  2:37983/140‑1 (MQ=255)
                                                                                                                              gggATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAATTTTGGCGTTAACATCCAGTGCAGCAAACAg     >  1:921944/1‑140 (MQ=255)
                                                                                                                                gATAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAATTTTGGCGTTAACATCCAGTGCAGCAAACAGCg   >  2:164757/1‑140 (MQ=255)
                                                                                                                                 aTAAACTGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAATTTTGGCGTTAACATCCAGTGCAGCAAACAGCgg  <  1:894058/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                     
TACTGATCCGCGGCATATCCTTCAAAGCCGTGCCACTTCGCCCCCGGCTCAAAACTGAAAAAACGGCGGTCGCTGGCTAACACTGATGTCGGATAATCCTGCCACAATTTGCCATCAACAACGGGCGGGATAAACGGGCGGAACAGCTTACAGCGCGCAAGAATAGCCTTGCGCGCTTCAATCCCTATCTCAACACACTCAGCCCACAGCCGACGCCCACTCTCCCCTTCATGAATTTTGGCGTTAACATCCAGTGCAGCAAACAGCGG  >  NC_000913/3107714‑3107982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A